Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06312

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06311 and MPMX19_06312 overlap by 4 nucleotidesMPMX19_06312 and MPMX19_06313 are separated by 193 nucleotidesMPMX19_06313 and MPMX19_06314 are separated by 179 nucleotides MPMX19_06311: MPMX19_06311 - Serine/threonine-protein kinase toxin HipA, at 73,775 to 75,061 _06311 MPMX19_06312: MPMX19_06312 - hypothetical protein, at 75,058 to 75,348 _06312 MPMX19_06313: MPMX19_06313 - hypothetical protein, at 75,542 to 76,006 _06313 MPMX19_06314: MPMX19_06314 - hypothetical protein, at 76,186 to 76,656 _06314 Position (kb) 75 76Strain fitness (log2 ratio) -3 -2 -1 0 1at 74.112 kb on + strand, within MPMX19_06311at 74.112 kb on + strand, within MPMX19_06311at 74.113 kb on - strand, within MPMX19_06311at 74.113 kb on - strand, within MPMX19_06311at 74.113 kb on - strand, within MPMX19_06311at 74.113 kb on - strand, within MPMX19_06311at 74.152 kb on + strand, within MPMX19_06311at 74.152 kb on + strand, within MPMX19_06311at 74.153 kb on - strand, within MPMX19_06311at 74.153 kb on - strand, within MPMX19_06311at 74.153 kb on - strand, within MPMX19_06311at 74.153 kb on - strand, within MPMX19_06311at 74.153 kb on - strand, within MPMX19_06311at 74.153 kb on - strand, within MPMX19_06311at 74.153 kb on - strand, within MPMX19_06311at 74.157 kb on + strand, within MPMX19_06311at 74.157 kb on + strand, within MPMX19_06311at 74.157 kb on + strand, within MPMX19_06311at 74.157 kb on + strand, within MPMX19_06311at 74.157 kb on + strand, within MPMX19_06311at 74.157 kb on + strand, within MPMX19_06311at 74.157 kb on + strand, within MPMX19_06311at 74.158 kb on - strand, within MPMX19_06311at 74.158 kb on - strand, within MPMX19_06311at 74.158 kb on - strand, within MPMX19_06311at 74.158 kb on - strand, within MPMX19_06311at 74.158 kb on - strand, within MPMX19_06311at 74.158 kb on - strand, within MPMX19_06311at 74.158 kb on - strand, within MPMX19_06311at 74.158 kb on - strand, within MPMX19_06311at 74.158 kb on - strand, within MPMX19_06311at 74.158 kb on - strand, within MPMX19_06311at 74.310 kb on + strand, within MPMX19_06311at 74.310 kb on + strand, within MPMX19_06311at 74.310 kb on + strand, within MPMX19_06311at 74.311 kb on - strand, within MPMX19_06311at 74.311 kb on - strand, within MPMX19_06311at 74.415 kb on + strand, within MPMX19_06311at 74.415 kb on + strand, within MPMX19_06311at 74.415 kb on + strand, within MPMX19_06311at 74.415 kb on + strand, within MPMX19_06311at 74.416 kb on - strand, within MPMX19_06311at 74.416 kb on - strand, within MPMX19_06311at 74.416 kb on - strand, within MPMX19_06311at 74.416 kb on - strand, within MPMX19_06311at 74.416 kb on - strand, within MPMX19_06311at 74.416 kb on - strand, within MPMX19_06311at 74.416 kb on - strand, within MPMX19_06311at 74.416 kb on - strand, within MPMX19_06311at 74.416 kb on - strand, within MPMX19_06311at 74.416 kb on - strand, within MPMX19_06311at 74.982 kb on + strandat 74.982 kb on + strandat 74.983 kb on - strandat 75.055 kb on + strandat 75.055 kb on + strandat 75.055 kb on + strandat 75.056 kb on - strandat 75.056 kb on - strandat 75.410 kb on - strandat 75.503 kb on + strandat 75.503 kb on + strandat 75.503 kb on + strandat 75.503 kb on + strandat 75.504 kb on - strandat 75.509 kb on + strandat 75.509 kb on + strandat 75.509 kb on + strandat 75.510 kb on - strandat 75.510 kb on - strandat 75.510 kb on - strandat 75.510 kb on - strandat 75.510 kb on - strandat 75.510 kb on - strandat 75.601 kb on + strand, within MPMX19_06313at 75.601 kb on + strand, within MPMX19_06313at 75.601 kb on + strand, within MPMX19_06313at 75.601 kb on + strand, within MPMX19_06313at 75.601 kb on + strand, within MPMX19_06313at 75.601 kb on + strand, within MPMX19_06313at 75.601 kb on + strand, within MPMX19_06313at 75.601 kb on + strand, within MPMX19_06313at 75.601 kb on + strand, within MPMX19_06313at 75.602 kb on - strand, within MPMX19_06313at 75.602 kb on - strand, within MPMX19_06313at 75.602 kb on - strand, within MPMX19_06313at 75.602 kb on - strand, within MPMX19_06313at 75.662 kb on + strand, within MPMX19_06313at 75.663 kb on - strand, within MPMX19_06313at 75.663 kb on - strand, within MPMX19_06313at 75.936 kb on - strand, within MPMX19_06313at 76.146 kb on + strandat 76.146 kb on + strandat 76.146 kb on + strandat 76.147 kb on - strandat 76.147 kb on - strandat 76.178 kb on + strandat 76.178 kb on + strandat 76.179 kb on - strandat 76.179 kb on - strandat 76.179 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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74,112 + MPMX19_06311 0.26 -1.9
74,112 + MPMX19_06311 0.26 +0.3
74,113 - MPMX19_06311 0.26 -0.4
74,113 - MPMX19_06311 0.26 -1.4
74,113 - MPMX19_06311 0.26 -1.6
74,113 - MPMX19_06311 0.26 -2.2
74,152 + MPMX19_06311 0.29 +0.3
74,152 + MPMX19_06311 0.29 -0.4
74,153 - MPMX19_06311 0.29 -3.3
74,153 - MPMX19_06311 0.29 -1.9
74,153 - MPMX19_06311 0.29 -1.7
74,153 - MPMX19_06311 0.29 -1.6
74,153 - MPMX19_06311 0.29 -0.7
74,153 - MPMX19_06311 0.29 +1.0
74,153 - MPMX19_06311 0.29 -1.1
74,157 + MPMX19_06311 0.30 +0.8
74,157 + MPMX19_06311 0.30 +0.3
74,157 + MPMX19_06311 0.30 -1.7
74,157 + MPMX19_06311 0.30 -1.2
74,157 + MPMX19_06311 0.30 -0.2
74,157 + MPMX19_06311 0.30 -3.4
74,157 + MPMX19_06311 0.30 +0.3
74,158 - MPMX19_06311 0.30 -1.7
74,158 - MPMX19_06311 0.30 +1.2
74,158 - MPMX19_06311 0.30 -0.2
74,158 - MPMX19_06311 0.30 +0.1
74,158 - MPMX19_06311 0.30 -0.6
74,158 - MPMX19_06311 0.30 -1.0
74,158 - MPMX19_06311 0.30 -0.7
74,158 - MPMX19_06311 0.30 -1.2
74,158 - MPMX19_06311 0.30 -1.8
74,158 - MPMX19_06311 0.30 -1.4
74,310 + MPMX19_06311 0.42 +0.6
74,310 + MPMX19_06311 0.42 -0.6
74,310 + MPMX19_06311 0.42 -1.1
74,311 - MPMX19_06311 0.42 -0.7
74,311 - MPMX19_06311 0.42 -0.9
74,415 + MPMX19_06311 0.50 -0.2
74,415 + MPMX19_06311 0.50 -0.7
74,415 + MPMX19_06311 0.50 -0.1
74,415 + MPMX19_06311 0.50 -1.3
74,416 - MPMX19_06311 0.50 -1.0
74,416 - MPMX19_06311 0.50 +0.3
74,416 - MPMX19_06311 0.50 -1.5
74,416 - MPMX19_06311 0.50 +0.4
74,416 - MPMX19_06311 0.50 -0.7
74,416 - MPMX19_06311 0.50 -2.2
74,416 - MPMX19_06311 0.50 -0.4
74,416 - MPMX19_06311 0.50 -1.6
74,416 - MPMX19_06311 0.50 -1.2
74,416 - MPMX19_06311 0.50 -0.1
74,982 + -1.2
74,982 + -1.3
74,983 - -1.7
75,055 + -1.0
75,055 + -1.7
75,055 + -1.7
75,056 - -0.2
75,056 - -1.2
75,410 - -2.3
75,503 + -0.5
75,503 + -1.5
75,503 + -0.6
75,503 + -1.1
75,504 - -0.6
75,509 + -1.1
75,509 + -0.6
75,509 + -0.2
75,510 - -0.9
75,510 - -1.7
75,510 - -1.4
75,510 - -1.4
75,510 - +0.0
75,510 - -1.2
75,601 + MPMX19_06313 0.13 +0.2
75,601 + MPMX19_06313 0.13 +0.0
75,601 + MPMX19_06313 0.13 -1.0
75,601 + MPMX19_06313 0.13 -1.4
75,601 + MPMX19_06313 0.13 -0.7
75,601 + MPMX19_06313 0.13 -1.0
75,601 + MPMX19_06313 0.13 +0.0
75,601 + MPMX19_06313 0.13 -0.3
75,601 + MPMX19_06313 0.13 -1.9
75,602 - MPMX19_06313 0.13 -0.2
75,602 - MPMX19_06313 0.13 -0.4
75,602 - MPMX19_06313 0.13 +0.6
75,602 - MPMX19_06313 0.13 -1.2
75,662 + MPMX19_06313 0.26 -0.5
75,663 - MPMX19_06313 0.26 -1.9
75,663 - MPMX19_06313 0.26 -2.0
75,936 - MPMX19_06313 0.85 -2.9
76,146 + +0.9
76,146 + +0.0
76,146 + -1.0
76,147 - +0.8
76,147 - -2.0
76,178 + +0.9
76,178 + +0.6
76,179 - -1.5
76,179 - -1.0
76,179 - -1.1

Or see this region's nucleotide sequence