Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06023 and MPMX19_06024 are separated by 5 nucleotides MPMX19_06024 and MPMX19_06025 are separated by 28 nucleotides MPMX19_06025 and MPMX19_06026 are separated by 74 nucleotides MPMX19_06026 and MPMX19_06027 are separated by 168 nucleotides
MPMX19_06023: MPMX19_06023 - Putative aliphatic sulfonates-binding protein, at 176,418 to 177,500
_06023
MPMX19_06024: MPMX19_06024 - hypothetical protein, at 177,506 to 177,823
_06024
MPMX19_06025: MPMX19_06025 - 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, at 177,852 to 178,892
_06025
MPMX19_06026: MPMX19_06026 - hypothetical protein, at 178,967 to 179,530
_06026
MPMX19_06027: MPMX19_06027 - hypothetical protein, at 179,699 to 180,925
_06027
Position (kb) 177
178
179 Strain fitness (log2 ratio) -2
-1
0
1
2 at 177.272 kb on + strand, within MPMX19_06023 at 177.272 kb on + strand, within MPMX19_06023 at 177.809 kb on + strand at 177.809 kb on + strand at 177.809 kb on + strand at 177.809 kb on + strand at 177.809 kb on + strand at 177.810 kb on - strand at 177.810 kb on - strand at 177.810 kb on - strand at 177.810 kb on - strand at 177.810 kb on - strand at 177.810 kb on - strand at 177.810 kb on - strand at 177.810 kb on - strand at 177.810 kb on - strand at 177.821 kb on + strand at 177.821 kb on + strand at 177.821 kb on - strand at 177.822 kb on - strand at 178.893 kb on - strand at 178.893 kb on - strand at 178.893 kb on - strand at 178.893 kb on - strand at 178.893 kb on - strand at 178.968 kb on + strand at 178.968 kb on + strand at 178.968 kb on + strand at 178.968 kb on + strand at 178.968 kb on + strand at 178.969 kb on - strand at 178.969 kb on - strand at 178.969 kb on - strand at 178.969 kb on - strand at 178.969 kb on - strand at 178.969 kb on - strand at 179.119 kb on - strand, within MPMX19_06026 at 179.551 kb on - strand at 179.563 kb on + strand at 179.563 kb on + strand at 179.564 kb on - strand at 179.627 kb on + strand at 179.627 kb on + strand at 179.627 kb on + strand at 179.627 kb on + strand at 179.673 kb on + strand at 179.674 kb on - strand at 179.674 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 177,272 + MPMX19_06023 0.79 -0.0 177,272 + MPMX19_06023 0.79 -0.0 177,809 + -0.0 177,809 + -0.8 177,809 + +1.6 177,809 + -2.0 177,809 + +0.6 177,810 - -0.8 177,810 - -0.4 177,810 - -0.4 177,810 - +1.6 177,810 - -0.8 177,810 - -1.3 177,810 - -1.6 177,810 - -0.4 177,810 - -1.6 177,821 + -1.8 177,821 + -0.0 177,821 - -1.2 177,822 - -1.2 178,893 - -0.0 178,893 - -0.8 178,893 - -1.2 178,893 - -1.6 178,893 - -0.8 178,968 + -0.8 178,968 + -2.0 178,968 + -0.8 178,968 + +0.6 178,968 + -1.3 178,969 - -1.0 178,969 - -0.4 178,969 - +1.8 178,969 - -0.8 178,969 - -2.0 178,969 - -0.5 179,119 - MPMX19_06026 0.27 -1.4 179,551 - -0.6 179,563 + -1.4 179,563 + +0.9 179,564 - +0.8 179,627 + -1.2 179,627 + -0.6 179,627 + -0.0 179,627 + -0.4 179,673 + -0.8 179,674 - +0.8 179,674 - +1.6
Or see this region's nucleotide sequence