Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05395

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05394 and MPMX19_05395 are separated by 186 nucleotidesMPMX19_05395 and MPMX19_05396 overlap by 8 nucleotidesMPMX19_05396 and MPMX19_05397 overlap by 14 nucleotides MPMX19_05394: MPMX19_05394 - L-cystine-binding protein FliY, at 73,335 to 74,138 _05394 MPMX19_05395: MPMX19_05395 - L-cystine transport system permease protein TcyB, at 74,325 to 74,999 _05395 MPMX19_05396: MPMX19_05396 - L-cystine transport system permease protein YecS, at 74,992 to 75,642 _05396 MPMX19_05397: MPMX19_05397 - Glutamine transport ATP-binding protein GlnQ, at 75,629 to 76,408 _05397 Position (kb) 74 75Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 73.416 kb on + strand, within MPMX19_05394at 73.416 kb on + strand, within MPMX19_05394at 73.416 kb on + strand, within MPMX19_05394at 73.416 kb on + strand, within MPMX19_05394at 73.416 kb on + strand, within MPMX19_05394at 73.416 kb on + strand, within MPMX19_05394at 73.416 kb on + strand, within MPMX19_05394at 73.416 kb on + strand, within MPMX19_05394at 73.416 kb on + strand, within MPMX19_05394at 73.416 kb on + strand, within MPMX19_05394at 73.416 kb on + strand, within MPMX19_05394at 73.416 kb on + strand, within MPMX19_05394at 73.416 kb on + strand, within MPMX19_05394at 73.416 kb on + strand, within MPMX19_05394at 73.416 kb on + strand, within MPMX19_05394at 73.416 kb on + strand, within MPMX19_05394at 73.416 kb on + strand, within MPMX19_05394at 73.416 kb on + strand, within MPMX19_05394at 73.416 kb on + strand, within MPMX19_05394at 73.416 kb on + strand, within MPMX19_05394at 73.417 kb on - strand, within MPMX19_05394at 73.417 kb on - strand, within MPMX19_05394at 73.417 kb on - strand, within MPMX19_05394at 73.417 kb on - strand, within MPMX19_05394at 73.417 kb on - strand, within MPMX19_05394at 73.417 kb on - strand, within MPMX19_05394at 73.417 kb on - strand, within MPMX19_05394at 73.417 kb on - strand, within MPMX19_05394at 73.417 kb on - strand, within MPMX19_05394at 73.417 kb on - strand, within MPMX19_05394at 73.417 kb on - strand, within MPMX19_05394at 73.530 kb on + strand, within MPMX19_05394at 73.531 kb on - strand, within MPMX19_05394at 73.531 kb on - strand, within MPMX19_05394at 73.531 kb on - strand, within MPMX19_05394at 73.617 kb on + strand, within MPMX19_05394at 73.617 kb on + strand, within MPMX19_05394at 73.617 kb on + strand, within MPMX19_05394at 73.618 kb on - strand, within MPMX19_05394at 73.618 kb on - strand, within MPMX19_05394at 73.618 kb on - strand, within MPMX19_05394at 73.618 kb on - strand, within MPMX19_05394at 73.618 kb on - strand, within MPMX19_05394at 73.618 kb on - strand, within MPMX19_05394at 73.618 kb on - strand, within MPMX19_05394at 73.618 kb on - strand, within MPMX19_05394at 73.716 kb on + strand, within MPMX19_05394at 73.716 kb on + strand, within MPMX19_05394at 73.716 kb on + strand, within MPMX19_05394at 73.716 kb on + strand, within MPMX19_05394at 73.716 kb on + strand, within MPMX19_05394at 73.716 kb on + strand, within MPMX19_05394at 73.716 kb on + strand, within MPMX19_05394at 73.716 kb on + strand, within MPMX19_05394at 73.716 kb on + strand, within MPMX19_05394at 73.716 kb on + strand, within MPMX19_05394at 73.716 kb on + strand, within MPMX19_05394at 73.717 kb on - strand, within MPMX19_05394at 73.717 kb on - strand, within MPMX19_05394at 73.717 kb on - strand, within MPMX19_05394at 73.717 kb on - strand, within MPMX19_05394at 73.717 kb on - strand, within MPMX19_05394at 73.717 kb on - strand, within MPMX19_05394at 73.717 kb on - strand, within MPMX19_05394at 73.857 kb on + strand, within MPMX19_05394at 73.857 kb on + strand, within MPMX19_05394at 74.141 kb on + strandat 74.141 kb on + strandat 74.141 kb on + strandat 74.141 kb on + strandat 74.141 kb on + strandat 74.141 kb on + strandat 74.141 kb on + strandat 74.141 kb on + strandat 74.141 kb on + strandat 74.141 kb on + strandat 74.141 kb on + strandat 74.141 kb on + strandat 74.141 kb on + strandat 74.141 kb on + strandat 74.141 kb on + strandat 74.141 kb on + strandat 74.141 kb on + strandat 74.141 kb on + strandat 74.141 kb on + strandat 74.142 kb on - strandat 74.142 kb on - strandat 74.142 kb on - strandat 74.142 kb on - strandat 74.142 kb on - strandat 74.142 kb on - strandat 74.142 kb on - strandat 74.142 kb on - strandat 74.142 kb on - strandat 74.142 kb on - strandat 74.142 kb on - strandat 74.142 kb on - strandat 74.142 kb on - strandat 74.142 kb on - strandat 74.142 kb on - strandat 74.142 kb on - strandat 74.142 kb on - strandat 74.142 kb on - strandat 74.142 kb on - strandat 74.142 kb on - strandat 74.331 kb on + strandat 74.331 kb on + strandat 74.331 kb on + strandat 74.331 kb on + strandat 74.331 kb on + strandat 74.331 kb on + strandat 74.332 kb on - strandat 74.332 kb on - strandat 74.332 kb on - strandat 74.332 kb on - strandat 74.361 kb on + strandat 74.361 kb on + strandat 74.361 kb on + strandat 74.361 kb on + strandat 74.361 kb on + strandat 74.362 kb on - strandat 74.362 kb on - strandat 74.362 kb on - strandat 74.362 kb on - strandat 74.362 kb on - strandat 74.363 kb on + strandat 74.363 kb on + strandat 74.363 kb on + strandat 74.363 kb on + strandat 74.363 kb on + strandat 74.363 kb on + strandat 74.363 kb on + strandat 74.363 kb on + strandat 74.363 kb on + strandat 74.363 kb on + strandat 74.364 kb on - strandat 74.364 kb on - strandat 74.364 kb on - strandat 74.364 kb on - strandat 74.364 kb on - strandat 74.364 kb on - strandat 74.364 kb on - strandat 74.364 kb on - strandat 74.364 kb on - strandat 74.364 kb on - strandat 74.364 kb on - strandat 74.364 kb on - strandat 74.364 kb on - strandat 74.364 kb on - strandat 74.364 kb on - strandat 74.364 kb on - strandat 74.364 kb on - strandat 74.364 kb on - strandat 74.502 kb on + strand, within MPMX19_05395at 74.502 kb on + strand, within MPMX19_05395at 74.502 kb on + strand, within MPMX19_05395at 74.502 kb on + strand, within MPMX19_05395at 74.502 kb on + strand, within MPMX19_05395at 74.502 kb on + strand, within MPMX19_05395at 74.502 kb on + strand, within MPMX19_05395at 74.502 kb on + strand, within MPMX19_05395at 74.502 kb on + strand, within MPMX19_05395at 74.502 kb on + strand, within MPMX19_05395at 74.502 kb on + strand, within MPMX19_05395at 74.502 kb on + strand, within MPMX19_05395at 74.503 kb on - strand, within MPMX19_05395at 74.503 kb on - strand, within MPMX19_05395at 74.503 kb on - strand, within MPMX19_05395at 74.503 kb on - strand, within MPMX19_05395at 74.503 kb on - strand, within MPMX19_05395at 74.503 kb on - strand, within MPMX19_05395at 74.503 kb on - strand, within MPMX19_05395at 74.503 kb on - strand, within MPMX19_05395at 74.503 kb on - strand, within MPMX19_05395at 74.503 kb on - strand, within MPMX19_05395at 74.503 kb on - strand, within MPMX19_05395at 74.578 kb on + strand, within MPMX19_05395at 74.578 kb on + strand, within MPMX19_05395at 74.578 kb on + strand, within MPMX19_05395at 74.578 kb on + strand, within MPMX19_05395at 74.578 kb on + strand, within MPMX19_05395at 74.578 kb on + strand, within MPMX19_05395at 74.578 kb on + strand, within MPMX19_05395at 74.579 kb on - strand, within MPMX19_05395at 74.579 kb on - strand, within MPMX19_05395at 74.579 kb on - strand, within MPMX19_05395at 74.579 kb on - strand, within MPMX19_05395at 74.579 kb on - strand, within MPMX19_05395at 74.634 kb on + strand, within MPMX19_05395at 74.733 kb on + strand, within MPMX19_05395at 74.733 kb on + strand, within MPMX19_05395at 74.733 kb on + strand, within MPMX19_05395at 74.733 kb on + strand, within MPMX19_05395at 74.733 kb on + strand, within MPMX19_05395at 74.733 kb on + strand, within MPMX19_05395at 74.734 kb on - strand, within MPMX19_05395at 74.734 kb on - strand, within MPMX19_05395at 74.734 kb on - strand, within MPMX19_05395at 74.734 kb on - strand, within MPMX19_05395at 74.734 kb on - strand, within MPMX19_05395at 74.734 kb on - strand, within MPMX19_05395at 74.734 kb on - strand, within MPMX19_05395at 74.895 kb on + strand, within MPMX19_05395at 74.895 kb on + strand, within MPMX19_05395at 74.895 kb on + strand, within MPMX19_05395at 74.895 kb on + strand, within MPMX19_05395at 74.896 kb on - strand, within MPMX19_05395at 74.896 kb on - strand, within MPMX19_05395at 74.896 kb on - strand, within MPMX19_05395at 74.896 kb on - strand, within MPMX19_05395at 74.896 kb on - strand, within MPMX19_05395at 74.896 kb on - strand, within MPMX19_05395at 74.896 kb on - strand, within MPMX19_05395at 74.916 kb on + strand, within MPMX19_05395at 74.916 kb on + strand, within MPMX19_05395at 74.916 kb on + strand, within MPMX19_05395at 74.916 kb on + strand, within MPMX19_05395at 74.916 kb on + strand, within MPMX19_05395at 74.917 kb on - strand, within MPMX19_05395at 74.917 kb on - strand, within MPMX19_05395at 74.917 kb on - strand, within MPMX19_05395at 75.289 kb on + strand, within MPMX19_05396at 75.289 kb on + strand, within MPMX19_05396at 75.289 kb on + strand, within MPMX19_05396at 75.289 kb on + strand, within MPMX19_05396at 75.290 kb on - strand, within MPMX19_05396at 75.290 kb on - strand, within MPMX19_05396at 75.290 kb on - strand, within MPMX19_05396at 75.290 kb on - strand, within MPMX19_05396at 75.290 kb on - strand, within MPMX19_05396at 75.550 kb on + strand, within MPMX19_05396at 75.550 kb on + strand, within MPMX19_05396at 75.550 kb on + strand, within MPMX19_05396at 75.550 kb on + strand, within MPMX19_05396at 75.550 kb on + strand, within MPMX19_05396at 75.550 kb on + strand, within MPMX19_05396at 75.551 kb on - strand, within MPMX19_05396at 75.551 kb on - strand, within MPMX19_05396at 75.551 kb on - strand, within MPMX19_05396at 75.551 kb on - strand, within MPMX19_05396at 75.551 kb on - strand, within MPMX19_05396at 75.551 kb on - strand, within MPMX19_05396at 75.571 kb on + strand, within MPMX19_05396at 75.571 kb on + strand, within MPMX19_05396at 75.571 kb on + strand, within MPMX19_05396at 75.571 kb on + strand, within MPMX19_05396at 75.571 kb on + strand, within MPMX19_05396at 75.571 kb on + strand, within MPMX19_05396at 75.571 kb on + strand, within MPMX19_05396at 75.571 kb on + strand, within MPMX19_05396at 75.572 kb on - strand, within MPMX19_05396at 75.572 kb on - strand, within MPMX19_05396at 75.572 kb on - strand, within MPMX19_05396at 75.572 kb on - strand, within MPMX19_05396at 75.572 kb on - strand, within MPMX19_05396at 75.572 kb on - strand, within MPMX19_05396at 75.586 kb on + strandat 75.587 kb on - strandat 75.587 kb on - strandat 75.641 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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73,416 + MPMX19_05394 0.10 -0.2
73,416 + MPMX19_05394 0.10 -1.1
73,416 + MPMX19_05394 0.10 +1.3
73,416 + MPMX19_05394 0.10 -0.1
73,416 + MPMX19_05394 0.10 -1.7
73,416 + MPMX19_05394 0.10 -2.4
73,416 + MPMX19_05394 0.10 -1.1
73,416 + MPMX19_05394 0.10 -0.9
73,416 + MPMX19_05394 0.10 -0.5
73,416 + MPMX19_05394 0.10 -0.4
73,416 + MPMX19_05394 0.10 -0.4
73,416 + MPMX19_05394 0.10 +3.0
73,416 + MPMX19_05394 0.10 -1.4
73,416 + MPMX19_05394 0.10 -1.1
73,416 + MPMX19_05394 0.10 -1.5
73,416 + MPMX19_05394 0.10 -0.4
73,416 + MPMX19_05394 0.10 -1.5
73,416 + MPMX19_05394 0.10 +0.5
73,416 + MPMX19_05394 0.10 +0.1
73,416 + MPMX19_05394 0.10 -0.9
73,417 - MPMX19_05394 0.10 -2.2
73,417 - MPMX19_05394 0.10 -1.1
73,417 - MPMX19_05394 0.10 +1.5
73,417 - MPMX19_05394 0.10 -1.4
73,417 - MPMX19_05394 0.10 -0.1
73,417 - MPMX19_05394 0.10 +0.1
73,417 - MPMX19_05394 0.10 +0.5
73,417 - MPMX19_05394 0.10 -0.5
73,417 - MPMX19_05394 0.10 -1.0
73,417 - MPMX19_05394 0.10 -0.2
73,417 - MPMX19_05394 0.10 +0.5
73,530 + MPMX19_05394 0.24 -0.3
73,531 - MPMX19_05394 0.24 -1.2
73,531 - MPMX19_05394 0.24 -1.7
73,531 - MPMX19_05394 0.24 -0.9
73,617 + MPMX19_05394 0.35 -0.4
73,617 + MPMX19_05394 0.35 -1.5
73,617 + MPMX19_05394 0.35 +0.1
73,618 - MPMX19_05394 0.35 -0.1
73,618 - MPMX19_05394 0.35 -2.5
73,618 - MPMX19_05394 0.35 +1.5
73,618 - MPMX19_05394 0.35 -0.5
73,618 - MPMX19_05394 0.35 -0.9
73,618 - MPMX19_05394 0.35 -0.9
73,618 - MPMX19_05394 0.35 +0.5
73,618 - MPMX19_05394 0.35 +1.1
73,716 + MPMX19_05394 0.47 -1.4
73,716 + MPMX19_05394 0.47 -0.5
73,716 + MPMX19_05394 0.47 -1.7
73,716 + MPMX19_05394 0.47 -0.5
73,716 + MPMX19_05394 0.47 -0.5
73,716 + MPMX19_05394 0.47 -1.1
73,716 + MPMX19_05394 0.47 -2.7
73,716 + MPMX19_05394 0.47 -1.4
73,716 + MPMX19_05394 0.47 -1.6
73,716 + MPMX19_05394 0.47 +0.2
73,716 + MPMX19_05394 0.47 +0.5
73,717 - MPMX19_05394 0.48 -0.9
73,717 - MPMX19_05394 0.48 -1.1
73,717 - MPMX19_05394 0.48 -0.1
73,717 - MPMX19_05394 0.48 -0.5
73,717 - MPMX19_05394 0.48 -1.5
73,717 - MPMX19_05394 0.48 -1.1
73,717 - MPMX19_05394 0.48 -0.7
73,857 + MPMX19_05394 0.65 -0.4
73,857 + MPMX19_05394 0.65 -1.1
74,141 + +0.1
74,141 + +1.0
74,141 + +1.5
74,141 + -0.4
74,141 + -0.1
74,141 + -1.4
74,141 + -0.7
74,141 + -0.4
74,141 + -0.5
74,141 + -0.5
74,141 + -1.5
74,141 + +0.5
74,141 + -0.5
74,141 + -0.3
74,141 + -1.1
74,141 + -0.2
74,141 + -0.7
74,141 + +0.0
74,141 + +0.1
74,142 - -3.2
74,142 - -1.1
74,142 - -0.7
74,142 - -0.5
74,142 - -0.5
74,142 - -0.5
74,142 - -0.5
74,142 - -0.5
74,142 - -0.1
74,142 - -0.9
74,142 - -0.5
74,142 - -0.7
74,142 - -1.1
74,142 - +0.9
74,142 - -2.0
74,142 - +0.1
74,142 - +0.1
74,142 - -1.5
74,142 - +0.5
74,142 - -0.7
74,331 + +0.5
74,331 + +0.9
74,331 + +0.5
74,331 + -0.8
74,331 + +0.1
74,331 + -0.7
74,332 - -0.5
74,332 - -0.5
74,332 - +0.2
74,332 - -0.5
74,361 + -0.9
74,361 + -0.5
74,361 + -1.4
74,361 + -0.1
74,361 + +0.5
74,362 - -0.1
74,362 - -1.1
74,362 - -0.0
74,362 - -0.7
74,362 - +2.0
74,363 + -0.1
74,363 + -0.1
74,363 + -1.5
74,363 + -0.5
74,363 + +1.5
74,363 + -0.7
74,363 + -1.5
74,363 + -1.4
74,363 + +0.5
74,363 + -0.5
74,364 - -1.1
74,364 - -0.9
74,364 - +0.9
74,364 - -0.5
74,364 - -1.4
74,364 - -0.9
74,364 - -1.5
74,364 - +1.5
74,364 - -1.7
74,364 - +1.5
74,364 - -0.7
74,364 - -1.5
74,364 - -0.8
74,364 - +0.0
74,364 - -1.3
74,364 - -0.3
74,364 - +1.0
74,364 - +0.5
74,502 + MPMX19_05395 0.26 +0.5
74,502 + MPMX19_05395 0.26 -1.4
74,502 + MPMX19_05395 0.26 -1.2
74,502 + MPMX19_05395 0.26 -0.5
74,502 + MPMX19_05395 0.26 -0.7
74,502 + MPMX19_05395 0.26 -1.1
74,502 + MPMX19_05395 0.26 +0.5
74,502 + MPMX19_05395 0.26 -1.5
74,502 + MPMX19_05395 0.26 +1.5
74,502 + MPMX19_05395 0.26 -0.4
74,502 + MPMX19_05395 0.26 -0.1
74,502 + MPMX19_05395 0.26 -1.2
74,503 - MPMX19_05395 0.26 -0.1
74,503 - MPMX19_05395 0.26 +0.7
74,503 - MPMX19_05395 0.26 -1.7
74,503 - MPMX19_05395 0.26 -0.1
74,503 - MPMX19_05395 0.26 +0.5
74,503 - MPMX19_05395 0.26 -1.4
74,503 - MPMX19_05395 0.26 -0.9
74,503 - MPMX19_05395 0.26 +0.7
74,503 - MPMX19_05395 0.26 -0.7
74,503 - MPMX19_05395 0.26 -2.1
74,503 - MPMX19_05395 0.26 +0.7
74,578 + MPMX19_05395 0.37 +0.5
74,578 + MPMX19_05395 0.37 -1.1
74,578 + MPMX19_05395 0.37 -1.1
74,578 + MPMX19_05395 0.37 -0.1
74,578 + MPMX19_05395 0.37 +1.0
74,578 + MPMX19_05395 0.37 +0.1
74,578 + MPMX19_05395 0.37 -0.9
74,579 - MPMX19_05395 0.38 -0.9
74,579 - MPMX19_05395 0.38 -0.1
74,579 - MPMX19_05395 0.38 -1.1
74,579 - MPMX19_05395 0.38 +0.3
74,579 - MPMX19_05395 0.38 -0.4
74,634 + MPMX19_05395 0.46 +1.5
74,733 + MPMX19_05395 0.60 -1.4
74,733 + MPMX19_05395 0.60 +0.0
74,733 + MPMX19_05395 0.60 +0.1
74,733 + MPMX19_05395 0.60 -0.1
74,733 + MPMX19_05395 0.60 -0.7
74,733 + MPMX19_05395 0.60 -2.2
74,734 - MPMX19_05395 0.61 -0.1
74,734 - MPMX19_05395 0.61 +0.1
74,734 - MPMX19_05395 0.61 +0.1
74,734 - MPMX19_05395 0.61 -0.4
74,734 - MPMX19_05395 0.61 -0.4
74,734 - MPMX19_05395 0.61 +0.7
74,734 - MPMX19_05395 0.61 -0.5
74,895 + MPMX19_05395 0.84 +0.3
74,895 + MPMX19_05395 0.84 +0.5
74,895 + MPMX19_05395 0.84 -1.1
74,895 + MPMX19_05395 0.84 -1.0
74,896 - MPMX19_05395 0.85 +0.7
74,896 - MPMX19_05395 0.85 -0.7
74,896 - MPMX19_05395 0.85 +0.0
74,896 - MPMX19_05395 0.85 -0.1
74,896 - MPMX19_05395 0.85 +0.5
74,896 - MPMX19_05395 0.85 +0.9
74,896 - MPMX19_05395 0.85 +1.2
74,916 + MPMX19_05395 0.88 -0.9
74,916 + MPMX19_05395 0.88 -0.5
74,916 + MPMX19_05395 0.88 +0.2
74,916 + MPMX19_05395 0.88 -1.7
74,916 + MPMX19_05395 0.88 -0.1
74,917 - MPMX19_05395 0.88 +0.3
74,917 - MPMX19_05395 0.88 -0.7
74,917 - MPMX19_05395 0.88 -0.9
75,289 + MPMX19_05396 0.46 -0.1
75,289 + MPMX19_05396 0.46 -0.1
75,289 + MPMX19_05396 0.46 -1.1
75,289 + MPMX19_05396 0.46 -1.0
75,290 - MPMX19_05396 0.46 -1.2
75,290 - MPMX19_05396 0.46 -2.5
75,290 - MPMX19_05396 0.46 -0.2
75,290 - MPMX19_05396 0.46 -0.4
75,290 - MPMX19_05396 0.46 -0.3
75,550 + MPMX19_05396 0.86 -1.1
75,550 + MPMX19_05396 0.86 -0.6
75,550 + MPMX19_05396 0.86 -1.1
75,550 + MPMX19_05396 0.86 +0.1
75,550 + MPMX19_05396 0.86 -3.4
75,550 + MPMX19_05396 0.86 -1.5
75,551 - MPMX19_05396 0.86 +0.0
75,551 - MPMX19_05396 0.86 -0.3
75,551 - MPMX19_05396 0.86 +0.9
75,551 - MPMX19_05396 0.86 -1.1
75,551 - MPMX19_05396 0.86 -1.0
75,551 - MPMX19_05396 0.86 -1.4
75,571 + MPMX19_05396 0.89 -1.0
75,571 + MPMX19_05396 0.89 +1.5
75,571 + MPMX19_05396 0.89 -0.9
75,571 + MPMX19_05396 0.89 +0.0
75,571 + MPMX19_05396 0.89 -0.5
75,571 + MPMX19_05396 0.89 -0.9
75,571 + MPMX19_05396 0.89 -1.4
75,571 + MPMX19_05396 0.89 -0.4
75,572 - MPMX19_05396 0.89 -1.1
75,572 - MPMX19_05396 0.89 -0.9
75,572 - MPMX19_05396 0.89 +0.5
75,572 - MPMX19_05396 0.89 -0.5
75,572 - MPMX19_05396 0.89 +1.9
75,572 - MPMX19_05396 0.89 +0.5
75,586 + -0.4
75,587 - +0.9
75,587 - +1.0
75,641 - -0.9

Or see this region's nucleotide sequence