Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03345 and MPMX19_03346 are separated by 144 nucleotides MPMX19_03346 and MPMX19_03347 overlap by 16 nucleotides
MPMX19_03345: MPMX19_03345 - Phenylacetaldehyde dehydrogenase, at 703,239 to 704,654
_03345
MPMX19_03346: MPMX19_03346 - hypothetical protein, at 704,799 to 705,449
_03346
MPMX19_03347: MPMX19_03347 - Putative multidrug export ATP-binding/permease protein, at 705,434 to 707,137
_03347
Position (kb) 704
705
706 Strain fitness (log2 ratio) -2
-1
0
1
2 at 703.810 kb on + strand, within MPMX19_03345 at 703.811 kb on - strand, within MPMX19_03345 at 703.811 kb on - strand, within MPMX19_03345 at 703.811 kb on - strand, within MPMX19_03345 at 703.811 kb on - strand, within MPMX19_03345 at 703.811 kb on - strand, within MPMX19_03345 at 704.348 kb on + strand, within MPMX19_03345 at 704.348 kb on + strand, within MPMX19_03345 at 704.348 kb on + strand, within MPMX19_03345 at 704.350 kb on + strand, within MPMX19_03345 at 704.350 kb on + strand, within MPMX19_03345 at 704.351 kb on - strand, within MPMX19_03345 at 704.351 kb on - strand, within MPMX19_03345 at 704.351 kb on - strand, within MPMX19_03345 at 704.351 kb on - strand, within MPMX19_03345 at 704.351 kb on - strand, within MPMX19_03345 at 704.351 kb on - strand, within MPMX19_03345 at 704.351 kb on - strand, within MPMX19_03345 at 704.351 kb on - strand, within MPMX19_03345 at 704.644 kb on + strand at 704.644 kb on + strand at 704.645 kb on - strand at 704.645 kb on - strand at 704.645 kb on - strand at 704.711 kb on + strand at 704.711 kb on + strand at 704.711 kb on + strand at 704.711 kb on + strand at 704.711 kb on + strand at 704.711 kb on + strand at 704.712 kb on - strand at 704.712 kb on - strand at 704.712 kb on - strand at 704.712 kb on - strand at 704.712 kb on - strand at 704.712 kb on - strand at 705.502 kb on - strand at 705.981 kb on + strand, within MPMX19_03347 at 705.981 kb on + strand, within MPMX19_03347 at 705.981 kb on + strand, within MPMX19_03347 at 705.981 kb on + strand, within MPMX19_03347 at 705.982 kb on - strand, within MPMX19_03347 at 705.982 kb on - strand, within MPMX19_03347 at 705.982 kb on - strand, within MPMX19_03347 at 706.293 kb on + strand, within MPMX19_03347 at 706.293 kb on + strand, within MPMX19_03347 at 706.293 kb on + strand, within MPMX19_03347 at 706.294 kb on - strand, within MPMX19_03347
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 703,810 + MPMX19_03345 0.40 +0.8 703,811 - MPMX19_03345 0.40 -1.3 703,811 - MPMX19_03345 0.40 -2.3 703,811 - MPMX19_03345 0.40 -0.3 703,811 - MPMX19_03345 0.40 -1.1 703,811 - MPMX19_03345 0.40 -2.2 704,348 + MPMX19_03345 0.78 -0.9 704,348 + MPMX19_03345 0.78 -0.6 704,348 + MPMX19_03345 0.78 -0.9 704,350 + MPMX19_03345 0.78 -0.6 704,350 + MPMX19_03345 0.78 -2.2 704,351 - MPMX19_03345 0.79 -1.3 704,351 - MPMX19_03345 0.79 -1.6 704,351 - MPMX19_03345 0.79 -0.9 704,351 - MPMX19_03345 0.79 +0.7 704,351 - MPMX19_03345 0.79 +0.3 704,351 - MPMX19_03345 0.79 +1.1 704,351 - MPMX19_03345 0.79 +1.1 704,351 - MPMX19_03345 0.79 -0.3 704,644 + -0.6 704,644 + -0.9 704,645 - +0.1 704,645 - +0.4 704,645 - -1.2 704,711 + -0.5 704,711 + -1.1 704,711 + +0.4 704,711 + -0.6 704,711 + -0.6 704,711 + +0.1 704,712 - -0.6 704,712 - -1.4 704,712 - +0.1 704,712 - -1.3 704,712 - +2.1 704,712 - -0.6 705,502 - +1.7 705,981 + MPMX19_03347 0.32 -0.8 705,981 + MPMX19_03347 0.32 -0.4 705,981 + MPMX19_03347 0.32 -0.5 705,981 + MPMX19_03347 0.32 -0.5 705,982 - MPMX19_03347 0.32 -0.1 705,982 - MPMX19_03347 0.32 +0.0 705,982 - MPMX19_03347 0.32 -1.0 706,293 + MPMX19_03347 0.50 -0.6 706,293 + MPMX19_03347 0.50 -0.3 706,293 + MPMX19_03347 0.50 +1.0 706,294 - MPMX19_03347 0.50 +0.1
Or see this region's nucleotide sequence