Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01147

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_01146 and MPMX19_01147 are separated by 433 nucleotidesMPMX19_01147 and MPMX19_01148 are separated by 70 nucleotides MPMX19_01146: MPMX19_01146 - hypothetical protein, at 1,181,787 to 1,182,998 _01146 MPMX19_01147: MPMX19_01147 - A-factor type gamma-butyrolactone 1'-reductase (1S-forming), at 1,183,432 to 1,184,196 _01147 MPMX19_01148: MPMX19_01148 - Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase, at 1,184,267 to 1,185,835 _01148 Position (kb) 1183 1184 1185Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1182.613 kb on + strand, within MPMX19_01146at 1182.613 kb on + strand, within MPMX19_01146at 1182.613 kb on + strand, within MPMX19_01146at 1182.613 kb on + strand, within MPMX19_01146at 1182.613 kb on + strand, within MPMX19_01146at 1182.613 kb on + strand, within MPMX19_01146at 1182.613 kb on + strand, within MPMX19_01146at 1182.613 kb on + strand, within MPMX19_01146at 1182.613 kb on + strand, within MPMX19_01146at 1182.613 kb on + strand, within MPMX19_01146at 1182.613 kb on + strand, within MPMX19_01146at 1182.613 kb on + strand, within MPMX19_01146at 1182.613 kb on + strand, within MPMX19_01146at 1182.613 kb on + strand, within MPMX19_01146at 1182.613 kb on + strand, within MPMX19_01146at 1182.613 kb on + strand, within MPMX19_01146at 1182.614 kb on - strand, within MPMX19_01146at 1182.614 kb on - strand, within MPMX19_01146at 1182.614 kb on - strand, within MPMX19_01146at 1182.614 kb on - strand, within MPMX19_01146at 1182.614 kb on - strand, within MPMX19_01146at 1182.614 kb on - strand, within MPMX19_01146at 1182.614 kb on - strand, within MPMX19_01146at 1182.614 kb on - strand, within MPMX19_01146at 1182.614 kb on - strand, within MPMX19_01146at 1182.614 kb on - strand, within MPMX19_01146at 1182.614 kb on - strand, within MPMX19_01146at 1182.614 kb on - strand, within MPMX19_01146at 1182.614 kb on - strand, within MPMX19_01146at 1182.614 kb on - strand, within MPMX19_01146at 1182.614 kb on - strand, within MPMX19_01146at 1182.614 kb on - strand, within MPMX19_01146at 1182.877 kb on + strandat 1182.877 kb on + strandat 1182.878 kb on - strandat 1182.904 kb on + strandat 1182.904 kb on + strandat 1182.904 kb on + strandat 1182.904 kb on + strandat 1182.904 kb on + strandat 1182.904 kb on + strandat 1182.904 kb on + strandat 1182.904 kb on + strandat 1182.904 kb on + strandat 1182.904 kb on + strandat 1182.904 kb on + strandat 1182.905 kb on - strandat 1182.905 kb on - strandat 1182.905 kb on - strandat 1182.905 kb on - strandat 1182.905 kb on - strandat 1182.905 kb on - strandat 1182.905 kb on - strandat 1182.905 kb on - strandat 1182.905 kb on - strandat 1182.905 kb on - strandat 1182.905 kb on - strandat 1182.905 kb on - strandat 1182.986 kb on + strandat 1182.986 kb on + strandat 1182.986 kb on + strandat 1183.100 kb on + strandat 1183.100 kb on + strandat 1183.100 kb on + strandat 1183.101 kb on - strandat 1183.101 kb on - strandat 1183.101 kb on - strandat 1183.177 kb on + strandat 1183.177 kb on + strandat 1183.177 kb on + strandat 1183.177 kb on + strandat 1183.178 kb on - strandat 1183.178 kb on - strandat 1183.178 kb on - strandat 1183.178 kb on - strandat 1183.178 kb on - strandat 1183.178 kb on - strandat 1183.178 kb on - strandat 1183.178 kb on - strandat 1183.250 kb on + strandat 1183.250 kb on + strandat 1183.250 kb on + strandat 1183.250 kb on + strandat 1183.250 kb on + strandat 1183.250 kb on + strandat 1183.250 kb on + strandat 1183.250 kb on + strandat 1183.250 kb on + strandat 1183.250 kb on + strandat 1183.250 kb on + strandat 1183.250 kb on + strandat 1183.251 kb on - strandat 1183.251 kb on - strandat 1183.251 kb on - strandat 1183.251 kb on - strandat 1183.251 kb on - strandat 1183.251 kb on - strandat 1183.251 kb on - strandat 1183.251 kb on - strandat 1183.251 kb on - strandat 1183.251 kb on - strandat 1183.251 kb on - strandat 1183.251 kb on - strandat 1183.285 kb on + strandat 1183.330 kb on + strandat 1183.331 kb on - strandat 1183.331 kb on - strandat 1183.771 kb on - strand, within MPMX19_01147at 1183.771 kb on - strand, within MPMX19_01147at 1183.873 kb on - strand, within MPMX19_01147at 1183.873 kb on - strand, within MPMX19_01147at 1183.901 kb on - strand, within MPMX19_01147at 1183.954 kb on + strand, within MPMX19_01147at 1183.954 kb on + strand, within MPMX19_01147at 1183.954 kb on + strand, within MPMX19_01147at 1183.954 kb on + strand, within MPMX19_01147at 1183.954 kb on + strand, within MPMX19_01147at 1183.955 kb on - strand, within MPMX19_01147at 1183.955 kb on - strand, within MPMX19_01147at 1184.005 kb on - strand, within MPMX19_01147at 1184.085 kb on + strand, within MPMX19_01147at 1184.085 kb on + strand, within MPMX19_01147at 1184.085 kb on + strand, within MPMX19_01147at 1184.085 kb on + strand, within MPMX19_01147at 1184.085 kb on + strand, within MPMX19_01147at 1184.086 kb on - strand, within MPMX19_01147at 1184.086 kb on - strand, within MPMX19_01147at 1184.086 kb on - strand, within MPMX19_01147at 1184.086 kb on - strand, within MPMX19_01147at 1184.086 kb on - strand, within MPMX19_01147at 1184.086 kb on - strand, within MPMX19_01147at 1184.086 kb on - strand, within MPMX19_01147at 1184.086 kb on - strand, within MPMX19_01147at 1184.086 kb on - strand, within MPMX19_01147at 1184.086 kb on - strand, within MPMX19_01147at 1184.116 kb on + strand, within MPMX19_01147at 1184.116 kb on + strand, within MPMX19_01147at 1184.116 kb on + strand, within MPMX19_01147at 1184.116 kb on + strand, within MPMX19_01147at 1184.116 kb on + strand, within MPMX19_01147at 1184.116 kb on + strand, within MPMX19_01147at 1184.116 kb on + strand, within MPMX19_01147at 1184.117 kb on - strand, within MPMX19_01147at 1184.254 kb on + strandat 1184.254 kb on + strandat 1184.255 kb on - strandat 1184.255 kb on - strandat 1184.255 kb on - strandat 1184.268 kb on + strandat 1184.571 kb on + strand, within MPMX19_01148at 1184.571 kb on + strand, within MPMX19_01148at 1184.634 kb on + strand, within MPMX19_01148at 1184.635 kb on - strand, within MPMX19_01148at 1184.878 kb on - strand, within MPMX19_01148at 1184.878 kb on - strand, within MPMX19_01148at 1185.078 kb on + strand, within MPMX19_01148at 1185.078 kb on + strand, within MPMX19_01148at 1185.078 kb on + strand, within MPMX19_01148at 1185.078 kb on + strand, within MPMX19_01148at 1185.078 kb on + strand, within MPMX19_01148at 1185.078 kb on + strand, within MPMX19_01148at 1185.078 kb on + strand, within MPMX19_01148at 1185.078 kb on + strand, within MPMX19_01148at 1185.078 kb on + strand, within MPMX19_01148at 1185.078 kb on + strand, within MPMX19_01148at 1185.078 kb on + strand, within MPMX19_01148at 1185.078 kb on + strand, within MPMX19_01148at 1185.079 kb on - strand, within MPMX19_01148at 1185.079 kb on - strand, within MPMX19_01148at 1185.079 kb on - strand, within MPMX19_01148at 1185.079 kb on - strand, within MPMX19_01148at 1185.079 kb on - strand, within MPMX19_01148at 1185.079 kb on - strand, within MPMX19_01148at 1185.079 kb on - strand, within MPMX19_01148at 1185.079 kb on - strand, within MPMX19_01148at 1185.079 kb on - strand, within MPMX19_01148at 1185.079 kb on - strand, within MPMX19_01148at 1185.079 kb on - strand, within MPMX19_01148at 1185.079 kb on - strand, within MPMX19_01148at 1185.118 kb on + strand, within MPMX19_01148at 1185.118 kb on + strand, within MPMX19_01148at 1185.118 kb on + strand, within MPMX19_01148at 1185.119 kb on - strand, within MPMX19_01148at 1185.119 kb on - strand, within MPMX19_01148at 1185.119 kb on - strand, within MPMX19_01148at 1185.119 kb on - strand, within MPMX19_01148at 1185.119 kb on - strand, within MPMX19_01148at 1185.119 kb on - strand, within MPMX19_01148at 1185.119 kb on - strand, within MPMX19_01148at 1185.160 kb on - strand, within MPMX19_01148

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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1,182,613 + MPMX19_01146 0.68 +0.1
1,182,613 + MPMX19_01146 0.68 +0.0
1,182,613 + MPMX19_01146 0.68 +0.5
1,182,613 + MPMX19_01146 0.68 -1.8
1,182,613 + MPMX19_01146 0.68 -1.8
1,182,613 + MPMX19_01146 0.68 -0.6
1,182,613 + MPMX19_01146 0.68 -1.3
1,182,613 + MPMX19_01146 0.68 -0.6
1,182,613 + MPMX19_01146 0.68 -0.8
1,182,613 + MPMX19_01146 0.68 -1.8
1,182,613 + MPMX19_01146 0.68 -0.3
1,182,613 + MPMX19_01146 0.68 -1.6
1,182,613 + MPMX19_01146 0.68 -2.6
1,182,613 + MPMX19_01146 0.68 -0.6
1,182,613 + MPMX19_01146 0.68 -1.5
1,182,613 + MPMX19_01146 0.68 +1.1
1,182,614 - MPMX19_01146 0.68 -1.0
1,182,614 - MPMX19_01146 0.68 -1.6
1,182,614 - MPMX19_01146 0.68 -1.1
1,182,614 - MPMX19_01146 0.68 -1.1
1,182,614 - MPMX19_01146 0.68 -1.1
1,182,614 - MPMX19_01146 0.68 -1.6
1,182,614 - MPMX19_01146 0.68 -0.9
1,182,614 - MPMX19_01146 0.68 -0.8
1,182,614 - MPMX19_01146 0.68 -1.1
1,182,614 - MPMX19_01146 0.68 -1.3
1,182,614 - MPMX19_01146 0.68 -1.3
1,182,614 - MPMX19_01146 0.68 +2.4
1,182,614 - MPMX19_01146 0.68 -0.6
1,182,614 - MPMX19_01146 0.68 -2.1
1,182,614 - MPMX19_01146 0.68 -1.6
1,182,614 - MPMX19_01146 0.68 -2.2
1,182,877 + -1.6
1,182,877 + -1.6
1,182,878 - -1.3
1,182,904 + +0.7
1,182,904 + -0.6
1,182,904 + +0.1
1,182,904 + -0.3
1,182,904 + +0.5
1,182,904 + -1.1
1,182,904 + -1.2
1,182,904 + -1.6
1,182,904 + +0.7
1,182,904 + -2.2
1,182,904 + -0.3
1,182,905 - -1.6
1,182,905 - -2.9
1,182,905 - -0.9
1,182,905 - -2.6
1,182,905 - -0.2
1,182,905 - -1.5
1,182,905 - -1.5
1,182,905 - -0.9
1,182,905 - -2.1
1,182,905 - -1.5
1,182,905 - +0.3
1,182,905 - +0.1
1,182,986 + -0.6
1,182,986 + -0.9
1,182,986 + -0.5
1,183,100 + +1.7
1,183,100 + +3.3
1,183,100 + -1.0
1,183,101 - +1.0
1,183,101 - -0.6
1,183,101 - +0.0
1,183,177 + -0.2
1,183,177 + +0.7
1,183,177 + -0.5
1,183,177 + +1.7
1,183,178 - +1.0
1,183,178 - -0.6
1,183,178 - -1.2
1,183,178 - -0.3
1,183,178 - +0.7
1,183,178 - -0.5
1,183,178 - -0.1
1,183,178 - +0.3
1,183,250 + +1.1
1,183,250 + -0.2
1,183,250 + +0.1
1,183,250 + +0.7
1,183,250 + -0.6
1,183,250 + +0.7
1,183,250 + -0.8
1,183,250 + -0.3
1,183,250 + -0.6
1,183,250 + +0.1
1,183,250 + +0.4
1,183,250 + -0.6
1,183,251 - -0.1
1,183,251 - -1.3
1,183,251 - +0.4
1,183,251 - -0.3
1,183,251 - -1.5
1,183,251 - -1.3
1,183,251 - -1.1
1,183,251 - +0.7
1,183,251 - -0.1
1,183,251 - -2.0
1,183,251 - +0.7
1,183,251 - +0.1
1,183,285 + +0.1
1,183,330 + -0.8
1,183,331 - -2.0
1,183,331 - -0.6
1,183,771 - MPMX19_01147 0.44 -0.3
1,183,771 - MPMX19_01147 0.44 +1.1
1,183,873 - MPMX19_01147 0.58 -0.9
1,183,873 - MPMX19_01147 0.58 -1.5
1,183,901 - MPMX19_01147 0.61 +0.9
1,183,954 + MPMX19_01147 0.68 -0.3
1,183,954 + MPMX19_01147 0.68 -0.6
1,183,954 + MPMX19_01147 0.68 -0.3
1,183,954 + MPMX19_01147 0.68 -0.9
1,183,954 + MPMX19_01147 0.68 -0.6
1,183,955 - MPMX19_01147 0.68 -1.2
1,183,955 - MPMX19_01147 0.68 -0.9
1,184,005 - MPMX19_01147 0.75 +2.7
1,184,085 + MPMX19_01147 0.85 -0.6
1,184,085 + MPMX19_01147 0.85 -1.3
1,184,085 + MPMX19_01147 0.85 -0.2
1,184,085 + MPMX19_01147 0.85 -0.5
1,184,085 + MPMX19_01147 0.85 +0.5
1,184,086 - MPMX19_01147 0.85 -0.2
1,184,086 - MPMX19_01147 0.85 -0.5
1,184,086 - MPMX19_01147 0.85 +1.7
1,184,086 - MPMX19_01147 0.85 -1.5
1,184,086 - MPMX19_01147 0.85 -0.4
1,184,086 - MPMX19_01147 0.85 +0.1
1,184,086 - MPMX19_01147 0.85 -0.8
1,184,086 - MPMX19_01147 0.85 -2.3
1,184,086 - MPMX19_01147 0.85 -0.9
1,184,086 - MPMX19_01147 0.85 -2.6
1,184,116 + MPMX19_01147 0.89 -1.1
1,184,116 + MPMX19_01147 0.89 +1.3
1,184,116 + MPMX19_01147 0.89 -0.6
1,184,116 + MPMX19_01147 0.89 -0.8
1,184,116 + MPMX19_01147 0.89 -0.0
1,184,116 + MPMX19_01147 0.89 +1.3
1,184,116 + MPMX19_01147 0.89 +0.3
1,184,117 - MPMX19_01147 0.90 -0.6
1,184,254 + -0.6
1,184,254 + -0.9
1,184,255 - +1.0
1,184,255 - -0.1
1,184,255 - -1.1
1,184,268 + -0.4
1,184,571 + MPMX19_01148 0.19 -0.7
1,184,571 + MPMX19_01148 0.19 -0.3
1,184,634 + MPMX19_01148 0.23 +0.9
1,184,635 - MPMX19_01148 0.23 -1.1
1,184,878 - MPMX19_01148 0.39 +0.8
1,184,878 - MPMX19_01148 0.39 -1.3
1,185,078 + MPMX19_01148 0.52 -0.9
1,185,078 + MPMX19_01148 0.52 -0.7
1,185,078 + MPMX19_01148 0.52 +0.5
1,185,078 + MPMX19_01148 0.52 +1.7
1,185,078 + MPMX19_01148 0.52 -0.3
1,185,078 + MPMX19_01148 0.52 +1.3
1,185,078 + MPMX19_01148 0.52 -0.3
1,185,078 + MPMX19_01148 0.52 -0.4
1,185,078 + MPMX19_01148 0.52 -0.3
1,185,078 + MPMX19_01148 0.52 +0.1
1,185,078 + MPMX19_01148 0.52 +0.1
1,185,078 + MPMX19_01148 0.52 -0.3
1,185,079 - MPMX19_01148 0.52 +0.7
1,185,079 - MPMX19_01148 0.52 -0.8
1,185,079 - MPMX19_01148 0.52 -1.7
1,185,079 - MPMX19_01148 0.52 +0.1
1,185,079 - MPMX19_01148 0.52 -0.7
1,185,079 - MPMX19_01148 0.52 +1.1
1,185,079 - MPMX19_01148 0.52 -0.9
1,185,079 - MPMX19_01148 0.52 +1.1
1,185,079 - MPMX19_01148 0.52 +0.3
1,185,079 - MPMX19_01148 0.52 +1.3
1,185,079 - MPMX19_01148 0.52 -2.9
1,185,079 - MPMX19_01148 0.52 +0.7
1,185,118 + MPMX19_01148 0.54 -0.7
1,185,118 + MPMX19_01148 0.54 -0.9
1,185,118 + MPMX19_01148 0.54 -1.9
1,185,119 - MPMX19_01148 0.54 +0.7
1,185,119 - MPMX19_01148 0.54 +0.7
1,185,119 - MPMX19_01148 0.54 +0.7
1,185,119 - MPMX19_01148 0.54 -0.9
1,185,119 - MPMX19_01148 0.54 +0.7
1,185,119 - MPMX19_01148 0.54 +0.1
1,185,119 - MPMX19_01148 0.54 -0.3
1,185,160 - MPMX19_01148 0.57 +1.7

Or see this region's nucleotide sequence