Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00676

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00675 and MPMX19_00676 are separated by 36 nucleotidesMPMX19_00676 and MPMX19_00677 are separated by 99 nucleotides MPMX19_00675: MPMX19_00675 - Peptidoglycan-associated lipoprotein, at 696,939 to 698,333 _00675 MPMX19_00676: MPMX19_00676 - hypothetical protein, at 698,370 to 699,515 _00676 MPMX19_00677: MPMX19_00677 - hypothetical protein, at 699,615 to 700,406 _00677 Position (kb) 698 699 700Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 697.382 kb on - strand, within MPMX19_00675at 697.382 kb on - strand, within MPMX19_00675at 697.382 kb on - strand, within MPMX19_00675at 697.382 kb on - strand, within MPMX19_00675at 697.382 kb on - strand, within MPMX19_00675at 697.382 kb on - strand, within MPMX19_00675at 697.382 kb on - strand, within MPMX19_00675at 698.091 kb on + strand, within MPMX19_00675at 698.092 kb on - strand, within MPMX19_00675at 698.206 kb on + strandat 698.206 kb on + strandat 698.206 kb on + strandat 698.206 kb on + strandat 698.206 kb on + strandat 698.207 kb on - strandat 698.207 kb on - strandat 698.207 kb on - strandat 698.207 kb on - strandat 698.207 kb on - strandat 698.472 kb on - strandat 698.500 kb on + strand, within MPMX19_00676at 698.500 kb on + strand, within MPMX19_00676at 698.500 kb on + strand, within MPMX19_00676at 698.500 kb on + strand, within MPMX19_00676at 698.500 kb on + strand, within MPMX19_00676at 698.500 kb on + strand, within MPMX19_00676at 698.500 kb on + strand, within MPMX19_00676at 698.500 kb on + strand, within MPMX19_00676at 698.500 kb on + strand, within MPMX19_00676at 698.500 kb on + strand, within MPMX19_00676at 698.500 kb on + strand, within MPMX19_00676at 698.500 kb on + strand, within MPMX19_00676at 698.500 kb on + strand, within MPMX19_00676at 698.500 kb on + strand, within MPMX19_00676at 698.500 kb on + strand, within MPMX19_00676at 698.500 kb on + strand, within MPMX19_00676at 698.500 kb on + strand, within MPMX19_00676at 698.500 kb on + strand, within MPMX19_00676at 698.500 kb on + strand, within MPMX19_00676at 698.500 kb on + strand, within MPMX19_00676at 698.500 kb on + strand, within MPMX19_00676at 698.500 kb on + strand, within MPMX19_00676at 698.501 kb on - strand, within MPMX19_00676at 698.501 kb on - strand, within MPMX19_00676at 698.501 kb on - strand, within MPMX19_00676at 698.501 kb on - strand, within MPMX19_00676at 698.501 kb on - strand, within MPMX19_00676at 698.501 kb on - strand, within MPMX19_00676at 698.501 kb on - strand, within MPMX19_00676at 698.501 kb on - strand, within MPMX19_00676at 698.501 kb on - strand, within MPMX19_00676at 698.501 kb on - strand, within MPMX19_00676at 698.501 kb on - strand, within MPMX19_00676at 698.501 kb on - strand, within MPMX19_00676at 698.501 kb on - strand, within MPMX19_00676at 698.501 kb on - strand, within MPMX19_00676at 698.501 kb on - strand, within MPMX19_00676at 698.501 kb on - strand, within MPMX19_00676at 698.501 kb on - strand, within MPMX19_00676at 698.501 kb on - strand, within MPMX19_00676at 698.639 kb on + strand, within MPMX19_00676at 698.639 kb on + strand, within MPMX19_00676at 698.639 kb on + strand, within MPMX19_00676at 698.639 kb on + strand, within MPMX19_00676at 698.639 kb on + strand, within MPMX19_00676at 698.639 kb on + strand, within MPMX19_00676at 698.639 kb on + strand, within MPMX19_00676at 698.639 kb on + strand, within MPMX19_00676at 698.639 kb on + strand, within MPMX19_00676at 698.639 kb on + strand, within MPMX19_00676at 698.639 kb on + strand, within MPMX19_00676at 698.640 kb on - strand, within MPMX19_00676at 698.640 kb on - strand, within MPMX19_00676at 698.640 kb on - strand, within MPMX19_00676at 698.640 kb on - strand, within MPMX19_00676at 698.640 kb on - strand, within MPMX19_00676at 698.640 kb on - strand, within MPMX19_00676at 698.640 kb on - strand, within MPMX19_00676at 698.640 kb on - strand, within MPMX19_00676at 698.640 kb on - strand, within MPMX19_00676at 698.780 kb on - strand, within MPMX19_00676at 698.780 kb on - strand, within MPMX19_00676at 698.780 kb on - strand, within MPMX19_00676at 699.136 kb on + strand, within MPMX19_00676at 699.136 kb on + strand, within MPMX19_00676at 699.137 kb on - strand, within MPMX19_00676at 699.137 kb on - strand, within MPMX19_00676at 699.137 kb on - strand, within MPMX19_00676at 699.137 kb on - strand, within MPMX19_00676at 699.304 kb on + strand, within MPMX19_00676at 699.304 kb on + strand, within MPMX19_00676at 699.304 kb on + strand, within MPMX19_00676at 699.305 kb on - strand, within MPMX19_00676at 699.305 kb on - strand, within MPMX19_00676at 699.525 kb on + strandat 699.525 kb on + strandat 699.525 kb on + strandat 699.526 kb on - strandat 699.526 kb on - strandat 699.552 kb on + strandat 699.552 kb on + strandat 699.553 kb on - strandat 699.616 kb on + strandat 699.616 kb on + strandat 699.616 kb on + strandat 699.616 kb on + strandat 699.617 kb on - strandat 699.617 kb on - strandat 699.617 kb on - strandat 700.413 kb on - strandat 700.413 kb on - strandat 700.445 kb on - strandat 700.445 kb on - strandat 700.445 kb on - strandat 700.445 kb on - strandat 700.445 kb on - strandat 700.445 kb on - strandat 700.445 kb on - strandat 700.445 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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697,382 - MPMX19_00675 0.32 +0.1
697,382 - MPMX19_00675 0.32 +0.7
697,382 - MPMX19_00675 0.32 -0.9
697,382 - MPMX19_00675 0.32 -0.8
697,382 - MPMX19_00675 0.32 +0.7
697,382 - MPMX19_00675 0.32 -1.7
697,382 - MPMX19_00675 0.32 -0.7
698,091 + MPMX19_00675 0.83 +0.9
698,092 - MPMX19_00675 0.83 -0.7
698,206 + +0.7
698,206 + -0.9
698,206 + +0.9
698,206 + -0.7
698,206 + +0.1
698,207 - -0.3
698,207 - -1.8
698,207 - -1.5
698,207 - -2.8
698,207 - -1.8
698,472 - +2.0
698,500 + MPMX19_00676 0.11 -0.9
698,500 + MPMX19_00676 0.11 -0.7
698,500 + MPMX19_00676 0.11 -0.7
698,500 + MPMX19_00676 0.11 +1.4
698,500 + MPMX19_00676 0.11 -0.3
698,500 + MPMX19_00676 0.11 -1.8
698,500 + MPMX19_00676 0.11 +0.7
698,500 + MPMX19_00676 0.11 -1.9
698,500 + MPMX19_00676 0.11 -1.3
698,500 + MPMX19_00676 0.11 -1.1
698,500 + MPMX19_00676 0.11 -0.1
698,500 + MPMX19_00676 0.11 +0.7
698,500 + MPMX19_00676 0.11 -0.7
698,500 + MPMX19_00676 0.11 -0.3
698,500 + MPMX19_00676 0.11 +0.3
698,500 + MPMX19_00676 0.11 -0.8
698,500 + MPMX19_00676 0.11 -0.3
698,500 + MPMX19_00676 0.11 -1.7
698,500 + MPMX19_00676 0.11 -1.5
698,500 + MPMX19_00676 0.11 -0.7
698,500 + MPMX19_00676 0.11 -0.7
698,500 + MPMX19_00676 0.11 +0.7
698,501 - MPMX19_00676 0.11 +0.1
698,501 - MPMX19_00676 0.11 -1.7
698,501 - MPMX19_00676 0.11 -0.2
698,501 - MPMX19_00676 0.11 -0.5
698,501 - MPMX19_00676 0.11 +0.1
698,501 - MPMX19_00676 0.11 -1.3
698,501 - MPMX19_00676 0.11 -0.9
698,501 - MPMX19_00676 0.11 -1.3
698,501 - MPMX19_00676 0.11 -0.9
698,501 - MPMX19_00676 0.11 -0.3
698,501 - MPMX19_00676 0.11 -0.5
698,501 - MPMX19_00676 0.11 -1.9
698,501 - MPMX19_00676 0.11 -1.2
698,501 - MPMX19_00676 0.11 -2.2
698,501 - MPMX19_00676 0.11 +2.1
698,501 - MPMX19_00676 0.11 -0.9
698,501 - MPMX19_00676 0.11 -2.7
698,501 - MPMX19_00676 0.11 -0.9
698,639 + MPMX19_00676 0.23 -0.4
698,639 + MPMX19_00676 0.23 +0.1
698,639 + MPMX19_00676 0.23 +0.7
698,639 + MPMX19_00676 0.23 -0.3
698,639 + MPMX19_00676 0.23 -0.7
698,639 + MPMX19_00676 0.23 -0.7
698,639 + MPMX19_00676 0.23 -1.0
698,639 + MPMX19_00676 0.23 +0.7
698,639 + MPMX19_00676 0.23 -0.7
698,639 + MPMX19_00676 0.23 -0.7
698,639 + MPMX19_00676 0.23 -1.5
698,640 - MPMX19_00676 0.24 -1.1
698,640 - MPMX19_00676 0.24 -2.0
698,640 - MPMX19_00676 0.24 -0.5
698,640 - MPMX19_00676 0.24 -1.5
698,640 - MPMX19_00676 0.24 +0.7
698,640 - MPMX19_00676 0.24 -1.7
698,640 - MPMX19_00676 0.24 -0.1
698,640 - MPMX19_00676 0.24 +1.0
698,640 - MPMX19_00676 0.24 -0.7
698,780 - MPMX19_00676 0.36 -1.0
698,780 - MPMX19_00676 0.36 -0.2
698,780 - MPMX19_00676 0.36 -1.7
699,136 + MPMX19_00676 0.67 -2.4
699,136 + MPMX19_00676 0.67 +1.7
699,137 - MPMX19_00676 0.67 -1.9
699,137 - MPMX19_00676 0.67 -0.1
699,137 - MPMX19_00676 0.67 +0.7
699,137 - MPMX19_00676 0.67 -0.8
699,304 + MPMX19_00676 0.82 -1.1
699,304 + MPMX19_00676 0.82 -0.3
699,304 + MPMX19_00676 0.82 +0.1
699,305 - MPMX19_00676 0.82 +0.7
699,305 - MPMX19_00676 0.82 -1.6
699,525 + -0.8
699,525 + -0.5
699,525 + -0.3
699,526 - -0.5
699,526 - +1.0
699,552 + -0.8
699,552 + -0.7
699,553 - -1.7
699,616 + -0.7
699,616 + -0.2
699,616 + -0.9
699,616 + +0.1
699,617 - -1.5
699,617 - +0.1
699,617 - -0.9
700,413 - +0.4
700,413 - +1.3
700,445 - -0.7
700,445 - -0.3
700,445 - -0.9
700,445 - +0.5
700,445 - +1.7
700,445 - +0.5
700,445 - +0.1
700,445 - -1.7

Or see this region's nucleotide sequence