Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_01902 and MPMX19_01903 are separated by 83 nucleotides MPMX19_01903 and MPMX19_01904 are separated by 829 nucleotides
MPMX19_01902: MPMX19_01902 - hypothetical protein, at 1,988,044 to 1,988,988
_01902
MPMX19_01903: MPMX19_01903 - 4-carboxy-4-hydroxy-2-oxoadipate aldolase, at 1,989,072 to 1,989,740
_01903
MPMX19_01904: MPMX19_01904 - tRNA-Gly, at 1,990,570 to 1,990,644
_01904
Position (kb) 1989
1990 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1988.144 kb on + strand, within MPMX19_01902 at 1988.144 kb on + strand, within MPMX19_01902 at 1988.144 kb on + strand, within MPMX19_01902 at 1988.144 kb on + strand, within MPMX19_01902 at 1988.144 kb on + strand, within MPMX19_01902 at 1988.144 kb on + strand, within MPMX19_01902 at 1988.144 kb on + strand, within MPMX19_01902 at 1988.144 kb on + strand, within MPMX19_01902 at 1988.144 kb on + strand, within MPMX19_01902 at 1988.144 kb on + strand, within MPMX19_01902 at 1988.145 kb on - strand, within MPMX19_01902 at 1988.145 kb on - strand, within MPMX19_01902 at 1988.145 kb on - strand, within MPMX19_01902 at 1988.145 kb on - strand, within MPMX19_01902 at 1988.145 kb on - strand, within MPMX19_01902 at 1988.145 kb on - strand, within MPMX19_01902 at 1988.145 kb on - strand, within MPMX19_01902 at 1988.162 kb on + strand, within MPMX19_01902 at 1988.162 kb on + strand, within MPMX19_01902 at 1988.162 kb on + strand, within MPMX19_01902 at 1988.162 kb on + strand, within MPMX19_01902 at 1988.162 kb on + strand, within MPMX19_01902 at 1988.162 kb on + strand, within MPMX19_01902 at 1988.162 kb on + strand, within MPMX19_01902 at 1988.162 kb on + strand, within MPMX19_01902 at 1988.163 kb on - strand, within MPMX19_01902 at 1988.163 kb on - strand, within MPMX19_01902 at 1988.163 kb on - strand, within MPMX19_01902 at 1988.163 kb on - strand, within MPMX19_01902 at 1988.163 kb on - strand, within MPMX19_01902 at 1988.639 kb on + strand, within MPMX19_01902 at 1988.639 kb on + strand, within MPMX19_01902 at 1988.639 kb on + strand, within MPMX19_01902 at 1988.639 kb on + strand, within MPMX19_01902 at 1988.639 kb on + strand, within MPMX19_01902 at 1988.639 kb on + strand, within MPMX19_01902 at 1988.639 kb on + strand, within MPMX19_01902 at 1988.639 kb on + strand, within MPMX19_01902 at 1988.640 kb on - strand, within MPMX19_01902 at 1988.640 kb on - strand, within MPMX19_01902 at 1988.640 kb on - strand, within MPMX19_01902 at 1988.780 kb on + strand, within MPMX19_01902 at 1988.780 kb on + strand, within MPMX19_01902 at 1988.780 kb on + strand, within MPMX19_01902 at 1988.780 kb on + strand, within MPMX19_01902 at 1988.780 kb on + strand, within MPMX19_01902 at 1988.780 kb on + strand, within MPMX19_01902 at 1988.780 kb on + strand, within MPMX19_01902 at 1988.780 kb on + strand, within MPMX19_01902 at 1988.780 kb on + strand, within MPMX19_01902 at 1988.781 kb on - strand, within MPMX19_01902 at 1988.781 kb on - strand, within MPMX19_01902 at 1988.781 kb on - strand, within MPMX19_01902 at 1988.781 kb on - strand, within MPMX19_01902 at 1988.781 kb on - strand, within MPMX19_01902 at 1988.781 kb on - strand, within MPMX19_01902 at 1988.781 kb on - strand, within MPMX19_01902 at 1988.781 kb on - strand, within MPMX19_01902 at 1988.781 kb on - strand, within MPMX19_01902 at 1988.781 kb on - strand, within MPMX19_01902 at 1988.781 kb on - strand, within MPMX19_01902 at 1988.781 kb on - strand, within MPMX19_01902 at 1988.781 kb on - strand, within MPMX19_01902 at 1988.781 kb on - strand, within MPMX19_01902 at 1988.781 kb on - strand, within MPMX19_01902 at 1988.864 kb on + strand, within MPMX19_01902 at 1988.864 kb on + strand, within MPMX19_01902 at 1988.864 kb on + strand, within MPMX19_01902 at 1988.864 kb on + strand, within MPMX19_01902 at 1988.864 kb on + strand, within MPMX19_01902 at 1988.864 kb on + strand, within MPMX19_01902 at 1988.864 kb on + strand, within MPMX19_01902 at 1988.864 kb on + strand, within MPMX19_01902 at 1988.864 kb on + strand, within MPMX19_01902 at 1988.864 kb on + strand, within MPMX19_01902 at 1988.864 kb on + strand, within MPMX19_01902 at 1988.864 kb on + strand, within MPMX19_01902 at 1988.864 kb on + strand, within MPMX19_01902 at 1988.864 kb on + strand, within MPMX19_01902 at 1988.864 kb on + strand, within MPMX19_01902 at 1988.864 kb on + strand, within MPMX19_01902 at 1988.864 kb on + strand, within MPMX19_01902 at 1988.864 kb on + strand, within MPMX19_01902 at 1988.864 kb on + strand, within MPMX19_01902 at 1988.864 kb on + strand, within MPMX19_01902 at 1988.864 kb on + strand, within MPMX19_01902 at 1988.864 kb on + strand, within MPMX19_01902 at 1988.864 kb on + strand, within MPMX19_01902 at 1988.864 kb on + strand, within MPMX19_01902 at 1988.864 kb on + strand, within MPMX19_01902 at 1988.864 kb on + strand, within MPMX19_01902 at 1988.864 kb on + strand, within MPMX19_01902 at 1988.864 kb on + strand, within MPMX19_01902 at 1988.864 kb on + strand, within MPMX19_01902 at 1988.864 kb on + strand, within MPMX19_01902 at 1988.864 kb on + strand, within MPMX19_01902 at 1988.864 kb on + strand, within MPMX19_01902 at 1988.864 kb on + strand, within MPMX19_01902 at 1988.864 kb on + strand, within MPMX19_01902 at 1988.864 kb on + strand, within MPMX19_01902 at 1988.864 kb on + strand, within MPMX19_01902 at 1988.864 kb on + strand, within MPMX19_01902 at 1988.864 kb on + strand, within MPMX19_01902 at 1988.864 kb on + strand, within MPMX19_01902 at 1988.864 kb on + strand, within MPMX19_01902 at 1988.865 kb on - strand, within MPMX19_01902 at 1988.865 kb on - strand, within MPMX19_01902 at 1988.865 kb on - strand, within MPMX19_01902 at 1988.865 kb on - strand, within MPMX19_01902 at 1988.865 kb on - strand, within MPMX19_01902 at 1988.865 kb on - strand, within MPMX19_01902 at 1988.865 kb on - strand, within MPMX19_01902 at 1988.865 kb on - strand, within MPMX19_01902 at 1988.865 kb on - strand, within MPMX19_01902 at 1988.865 kb on - strand, within MPMX19_01902 at 1988.865 kb on - strand, within MPMX19_01902 at 1988.865 kb on - strand, within MPMX19_01902 at 1988.865 kb on - strand, within MPMX19_01902 at 1988.865 kb on - strand, within MPMX19_01902 at 1988.865 kb on - strand, within MPMX19_01902 at 1988.865 kb on - strand, within MPMX19_01902 at 1988.865 kb on - strand, within MPMX19_01902 at 1988.865 kb on - strand, within MPMX19_01902 at 1988.865 kb on - strand, within MPMX19_01902 at 1988.865 kb on - strand, within MPMX19_01902 at 1988.865 kb on - strand, within MPMX19_01902 at 1988.865 kb on - strand, within MPMX19_01902 at 1988.865 kb on - strand, within MPMX19_01902 at 1988.865 kb on - strand, within MPMX19_01902 at 1988.865 kb on - strand, within MPMX19_01902 at 1988.865 kb on - strand, within MPMX19_01902 at 1988.865 kb on - strand, within MPMX19_01902 at 1988.865 kb on - strand, within MPMX19_01902 at 1988.865 kb on - strand, within MPMX19_01902 at 1988.865 kb on - strand, within MPMX19_01902 at 1988.865 kb on - strand, within MPMX19_01902 at 1988.865 kb on - strand, within MPMX19_01902 at 1988.865 kb on - strand, within MPMX19_01902 at 1988.918 kb on + strand at 1988.919 kb on - strand at 1988.919 kb on - strand at 1989.059 kb on + strand at 1989.059 kb on + strand at 1989.060 kb on - strand at 1989.060 kb on - strand at 1989.060 kb on - strand at 1989.594 kb on - strand, within MPMX19_01903 at 1989.712 kb on + strand at 1989.724 kb on + strand at 1989.724 kb on + strand at 1989.724 kb on + strand at 1989.724 kb on + strand at 1989.724 kb on + strand at 1989.724 kb on + strand at 1989.725 kb on - strand at 1989.725 kb on - strand at 1989.725 kb on - strand at 1989.725 kb on - strand at 1989.725 kb on - strand at 1989.734 kb on + strand at 1989.734 kb on + strand at 1989.734 kb on + strand at 1989.734 kb on + strand at 1989.734 kb on + strand at 1989.734 kb on + strand at 1989.734 kb on + strand at 1989.734 kb on + strand at 1989.734 kb on + strand at 1989.734 kb on + strand at 1989.734 kb on + strand at 1989.734 kb on + strand at 1989.735 kb on - strand at 1989.735 kb on - strand at 1989.735 kb on - strand at 1989.735 kb on - strand at 1989.735 kb on - strand at 1989.735 kb on - strand at 1989.735 kb on - strand at 1989.735 kb on - strand at 1989.735 kb on - strand at 1989.735 kb on - strand at 1989.759 kb on + strand at 1989.759 kb on + strand at 1989.759 kb on + strand at 1989.759 kb on + strand at 1989.760 kb on - strand at 1989.760 kb on - strand at 1989.760 kb on - strand at 1989.787 kb on - strand at 1990.332 kb on + strand at 1990.332 kb on + strand at 1990.332 kb on + strand at 1990.333 kb on - strand at 1990.333 kb on - strand at 1990.340 kb on + strand at 1990.341 kb on - strand at 1990.341 kb on - strand at 1990.341 kb on - strand at 1990.341 kb on - strand at 1990.341 kb on - strand at 1990.341 kb on - strand at 1990.438 kb on - strand at 1990.465 kb on + strand at 1990.465 kb on + strand at 1990.465 kb on + strand at 1990.466 kb on - strand at 1990.466 kb on - strand at 1990.466 kb on - strand at 1990.554 kb on - strand at 1990.554 kb on - strand at 1990.716 kb on + strand at 1990.716 kb on + strand at 1990.716 kb on + strand at 1990.716 kb on + strand at 1990.717 kb on - strand at 1990.717 kb on - strand at 1990.718 kb on + strand at 1990.718 kb on + strand at 1990.718 kb on + strand at 1990.718 kb on + strand at 1990.718 kb on + strand at 1990.718 kb on + strand at 1990.719 kb on - strand at 1990.719 kb on - strand at 1990.719 kb on - strand at 1990.719 kb on - strand at 1990.719 kb on - strand at 1990.719 kb on - strand at 1990.719 kb on - strand at 1990.719 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 1,988,144 + MPMX19_01902 0.11 -0.7 1,988,144 + MPMX19_01902 0.11 +0.2 1,988,144 + MPMX19_01902 0.11 -0.4 1,988,144 + MPMX19_01902 0.11 +0.3 1,988,144 + MPMX19_01902 0.11 -0.3 1,988,144 + MPMX19_01902 0.11 +1.0 1,988,144 + MPMX19_01902 0.11 -1.2 1,988,144 + MPMX19_01902 0.11 +0.3 1,988,144 + MPMX19_01902 0.11 -0.7 1,988,144 + MPMX19_01902 0.11 -1.4 1,988,145 - MPMX19_01902 0.11 -1.0 1,988,145 - MPMX19_01902 0.11 +1.6 1,988,145 - MPMX19_01902 0.11 -1.4 1,988,145 - MPMX19_01902 0.11 +1.2 1,988,145 - MPMX19_01902 0.11 +1.6 1,988,145 - MPMX19_01902 0.11 -0.4 1,988,145 - MPMX19_01902 0.11 -1.1 1,988,162 + MPMX19_01902 0.12 +0.6 1,988,162 + MPMX19_01902 0.12 -0.6 1,988,162 + MPMX19_01902 0.12 -0.8 1,988,162 + MPMX19_01902 0.12 -0.9 1,988,162 + MPMX19_01902 0.12 +0.0 1,988,162 + MPMX19_01902 0.12 +0.6 1,988,162 + MPMX19_01902 0.12 -0.4 1,988,162 + MPMX19_01902 0.12 -0.8 1,988,163 - MPMX19_01902 0.13 -1.5 1,988,163 - MPMX19_01902 0.13 -0.4 1,988,163 - MPMX19_01902 0.13 -1.0 1,988,163 - MPMX19_01902 0.13 +0.5 1,988,163 - MPMX19_01902 0.13 -0.3 1,988,639 + MPMX19_01902 0.63 +0.3 1,988,639 + MPMX19_01902 0.63 -0.4 1,988,639 + MPMX19_01902 0.63 +0.9 1,988,639 + MPMX19_01902 0.63 +0.6 1,988,639 + MPMX19_01902 0.63 +0.3 1,988,639 + MPMX19_01902 0.63 -0.4 1,988,639 + MPMX19_01902 0.63 +0.3 1,988,639 + MPMX19_01902 0.63 -0.4 1,988,640 - MPMX19_01902 0.63 -0.7 1,988,640 - MPMX19_01902 0.63 +1.3 1,988,640 - MPMX19_01902 0.63 -1.8 1,988,780 + MPMX19_01902 0.78 -1.1 1,988,780 + MPMX19_01902 0.78 -1.0 1,988,780 + MPMX19_01902 0.78 -0.4 1,988,780 + MPMX19_01902 0.78 +0.0 1,988,780 + MPMX19_01902 0.78 -0.9 1,988,780 + MPMX19_01902 0.78 -1.0 1,988,780 + MPMX19_01902 0.78 -0.2 1,988,780 + MPMX19_01902 0.78 -0.5 1,988,780 + MPMX19_01902 0.78 +1.2 1,988,781 - MPMX19_01902 0.78 +1.0 1,988,781 - MPMX19_01902 0.78 +0.0 1,988,781 - MPMX19_01902 0.78 -2.6 1,988,781 - MPMX19_01902 0.78 +0.0 1,988,781 - MPMX19_01902 0.78 +2.2 1,988,781 - MPMX19_01902 0.78 +1.6 1,988,781 - MPMX19_01902 0.78 +1.0 1,988,781 - MPMX19_01902 0.78 +0.3 1,988,781 - MPMX19_01902 0.78 -0.4 1,988,781 - MPMX19_01902 0.78 -1.0 1,988,781 - MPMX19_01902 0.78 -0.7 1,988,781 - MPMX19_01902 0.78 +0.0 1,988,781 - MPMX19_01902 0.78 +0.3 1,988,781 - MPMX19_01902 0.78 -1.4 1,988,781 - MPMX19_01902 0.78 -1.5 1,988,864 + MPMX19_01902 0.87 -1.0 1,988,864 + MPMX19_01902 0.87 -0.6 1,988,864 + MPMX19_01902 0.87 -1.4 1,988,864 + MPMX19_01902 0.87 -0.5 1,988,864 + MPMX19_01902 0.87 -0.3 1,988,864 + MPMX19_01902 0.87 -1.5 1,988,864 + MPMX19_01902 0.87 +0.6 1,988,864 + MPMX19_01902 0.87 -0.4 1,988,864 + MPMX19_01902 0.87 +1.6 1,988,864 + MPMX19_01902 0.87 -1.5 1,988,864 + MPMX19_01902 0.87 +0.5 1,988,864 + MPMX19_01902 0.87 -1.8 1,988,864 + MPMX19_01902 0.87 -0.3 1,988,864 + MPMX19_01902 0.87 +1.0 1,988,864 + MPMX19_01902 0.87 +1.6 1,988,864 + MPMX19_01902 0.87 -1.3 1,988,864 + MPMX19_01902 0.87 +0.8 1,988,864 + MPMX19_01902 0.87 -1.4 1,988,864 + MPMX19_01902 0.87 +0.0 1,988,864 + MPMX19_01902 0.87 +0.0 1,988,864 + MPMX19_01902 0.87 -0.6 1,988,864 + MPMX19_01902 0.87 -0.4 1,988,864 + MPMX19_01902 0.87 -0.7 1,988,864 + MPMX19_01902 0.87 -1.5 1,988,864 + MPMX19_01902 0.87 +0.0 1,988,864 + MPMX19_01902 0.87 -0.7 1,988,864 + MPMX19_01902 0.87 -1.0 1,988,864 + MPMX19_01902 0.87 -1.0 1,988,864 + MPMX19_01902 0.87 -0.0 1,988,864 + MPMX19_01902 0.87 -1.2 1,988,864 + MPMX19_01902 0.87 +0.3 1,988,864 + MPMX19_01902 0.87 +0.0 1,988,864 + MPMX19_01902 0.87 +0.0 1,988,864 + MPMX19_01902 0.87 -0.7 1,988,864 + MPMX19_01902 0.87 +0.6 1,988,864 + MPMX19_01902 0.87 -1.0 1,988,864 + MPMX19_01902 0.87 -0.4 1,988,864 + MPMX19_01902 0.87 -1.5 1,988,864 + MPMX19_01902 0.87 -0.2 1,988,864 + MPMX19_01902 0.87 -1.0 1,988,865 - MPMX19_01902 0.87 +0.6 1,988,865 - MPMX19_01902 0.87 -0.5 1,988,865 - MPMX19_01902 0.87 -0.7 1,988,865 - MPMX19_01902 0.87 -1.4 1,988,865 - MPMX19_01902 0.87 -1.4 1,988,865 - MPMX19_01902 0.87 -0.7 1,988,865 - MPMX19_01902 0.87 +0.0 1,988,865 - MPMX19_01902 0.87 +0.0 1,988,865 - MPMX19_01902 0.87 +2.4 1,988,865 - MPMX19_01902 0.87 -0.4 1,988,865 - MPMX19_01902 0.87 +1.2 1,988,865 - MPMX19_01902 0.87 +0.6 1,988,865 - MPMX19_01902 0.87 +0.6 1,988,865 - MPMX19_01902 0.87 +0.6 1,988,865 - MPMX19_01902 0.87 +0.3 1,988,865 - MPMX19_01902 0.87 -0.7 1,988,865 - MPMX19_01902 0.87 -0.7 1,988,865 - MPMX19_01902 0.87 -1.0 1,988,865 - MPMX19_01902 0.87 -2.2 1,988,865 - MPMX19_01902 0.87 -1.2 1,988,865 - MPMX19_01902 0.87 -1.4 1,988,865 - MPMX19_01902 0.87 -0.4 1,988,865 - MPMX19_01902 0.87 +0.0 1,988,865 - MPMX19_01902 0.87 +0.6 1,988,865 - MPMX19_01902 0.87 -0.5 1,988,865 - MPMX19_01902 0.87 -1.4 1,988,865 - MPMX19_01902 0.87 +0.4 1,988,865 - MPMX19_01902 0.87 -0.4 1,988,865 - MPMX19_01902 0.87 -0.6 1,988,865 - MPMX19_01902 0.87 -1.7 1,988,865 - MPMX19_01902 0.87 -0.2 1,988,865 - MPMX19_01902 0.87 +1.2 1,988,865 - MPMX19_01902 0.87 +2.6 1,988,918 + -1.0 1,988,919 - +0.6 1,988,919 - -1.9 1,989,059 + +0.6 1,989,059 + +1.0 1,989,060 - -1.7 1,989,060 - +0.4 1,989,060 - -1.4 1,989,594 - MPMX19_01903 0.78 -1.2 1,989,712 + -1.5 1,989,724 + -1.2 1,989,724 + +0.5 1,989,724 + -1.7 1,989,724 + -0.7 1,989,724 + -1.2 1,989,724 + -1.2 1,989,725 - +0.0 1,989,725 - -1.0 1,989,725 - -1.9 1,989,725 - -2.0 1,989,725 - +1.9 1,989,734 + +0.4 1,989,734 + -1.4 1,989,734 + -1.2 1,989,734 + -1.0 1,989,734 + +0.9 1,989,734 + -1.5 1,989,734 + -1.0 1,989,734 + -0.4 1,989,734 + -0.7 1,989,734 + -0.8 1,989,734 + -0.3 1,989,734 + -1.4 1,989,735 - +0.3 1,989,735 - -0.5 1,989,735 - -0.1 1,989,735 - -0.4 1,989,735 - -0.7 1,989,735 - +0.6 1,989,735 - -2.0 1,989,735 - +0.2 1,989,735 - -1.5 1,989,735 - -0.4 1,989,759 + -1.8 1,989,759 + +0.5 1,989,759 + -0.2 1,989,759 + -1.0 1,989,760 - -1.2 1,989,760 - -1.7 1,989,760 - -1.0 1,989,787 - -0.4 1,990,332 + +0.5 1,990,332 + -2.0 1,990,332 + +1.9 1,990,333 - +0.8 1,990,333 - -1.0 1,990,340 + +0.0 1,990,341 - -1.5 1,990,341 - -0.8 1,990,341 - +0.4 1,990,341 - -0.5 1,990,341 - -1.4 1,990,341 - -1.4 1,990,438 - -0.5 1,990,465 + -0.8 1,990,465 + +1.2 1,990,465 + -0.4 1,990,466 - +0.0 1,990,466 - -0.5 1,990,466 - +0.6 1,990,554 - -0.6 1,990,554 - -1.9 1,990,716 + -0.1 1,990,716 + -1.0 1,990,716 + +1.0 1,990,716 + -0.3 1,990,717 - +0.0 1,990,717 - +0.0 1,990,718 + -0.4 1,990,718 + -0.4 1,990,718 + -0.2 1,990,718 + -0.5 1,990,718 + +0.6 1,990,718 + +0.9 1,990,719 - -0.5 1,990,719 - -2.1 1,990,719 - +1.2 1,990,719 - -0.4 1,990,719 - -1.3 1,990,719 - -1.0 1,990,719 - -1.2 1,990,719 - +0.6
Or see this region's nucleotide sequence