Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00853

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00851 and MPMX19_00852 are separated by 4 nucleotidesMPMX19_00852 and MPMX19_00853 overlap by 4 nucleotidesMPMX19_00853 and MPMX19_00854 are separated by 1 nucleotides MPMX19_00851: MPMX19_00851 - hypothetical protein, at 882,680 to 883,387 _00851 MPMX19_00852: MPMX19_00852 - hypothetical protein, at 883,392 to 884,246 _00852 MPMX19_00853: MPMX19_00853 - hypothetical protein, at 884,243 to 884,974 _00853 MPMX19_00854: MPMX19_00854 - hypothetical protein, at 884,976 to 888,590 _00854 Position (kb) 884 885Strain fitness (log2 ratio) -2 -1 0 1 2 3at 883.515 kb on - strand, within MPMX19_00852at 884.122 kb on + strand, within MPMX19_00852at 884.122 kb on + strand, within MPMX19_00852at 884.122 kb on + strand, within MPMX19_00852at 884.123 kb on - strand, within MPMX19_00852at 884.344 kb on + strand, within MPMX19_00853at 884.344 kb on + strand, within MPMX19_00853at 884.344 kb on + strand, within MPMX19_00853at 884.344 kb on + strand, within MPMX19_00853at 884.344 kb on + strand, within MPMX19_00853at 884.344 kb on + strand, within MPMX19_00853at 884.344 kb on + strand, within MPMX19_00853at 884.344 kb on + strand, within MPMX19_00853at 884.344 kb on + strand, within MPMX19_00853at 884.344 kb on + strand, within MPMX19_00853at 884.344 kb on + strand, within MPMX19_00853at 884.344 kb on + strand, within MPMX19_00853at 884.344 kb on + strand, within MPMX19_00853at 884.344 kb on + strand, within MPMX19_00853at 884.344 kb on + strand, within MPMX19_00853at 884.344 kb on + strand, within MPMX19_00853at 884.344 kb on + strand, within MPMX19_00853at 884.344 kb on + strand, within MPMX19_00853at 884.345 kb on - strand, within MPMX19_00853at 884.345 kb on - strand, within MPMX19_00853at 884.345 kb on - strand, within MPMX19_00853at 884.345 kb on - strand, within MPMX19_00853at 884.345 kb on - strand, within MPMX19_00853at 884.345 kb on - strand, within MPMX19_00853at 884.345 kb on - strand, within MPMX19_00853at 884.345 kb on - strand, within MPMX19_00853at 884.345 kb on - strand, within MPMX19_00853at 884.345 kb on - strand, within MPMX19_00853at 884.345 kb on - strand, within MPMX19_00853at 884.345 kb on - strand, within MPMX19_00853at 884.345 kb on - strand, within MPMX19_00853at 884.345 kb on - strand, within MPMX19_00853at 884.345 kb on - strand, within MPMX19_00853at 884.345 kb on - strand, within MPMX19_00853at 884.345 kb on - strand, within MPMX19_00853at 884.345 kb on - strand, within MPMX19_00853at 884.345 kb on - strand, within MPMX19_00853at 884.345 kb on - strand, within MPMX19_00853at 884.345 kb on - strand, within MPMX19_00853at 884.345 kb on - strand, within MPMX19_00853at 884.345 kb on - strand, within MPMX19_00853at 884.345 kb on - strand, within MPMX19_00853at 884.345 kb on - strand, within MPMX19_00853at 884.345 kb on - strand, within MPMX19_00853at 884.345 kb on - strand, within MPMX19_00853at 884.369 kb on + strand, within MPMX19_00853at 884.369 kb on + strand, within MPMX19_00853at 884.369 kb on + strand, within MPMX19_00853at 884.369 kb on + strand, within MPMX19_00853at 884.369 kb on + strand, within MPMX19_00853at 884.369 kb on + strand, within MPMX19_00853at 884.369 kb on + strand, within MPMX19_00853at 884.369 kb on + strand, within MPMX19_00853at 884.369 kb on + strand, within MPMX19_00853at 884.369 kb on + strand, within MPMX19_00853at 884.369 kb on + strand, within MPMX19_00853at 884.370 kb on - strand, within MPMX19_00853at 884.370 kb on - strand, within MPMX19_00853at 884.370 kb on - strand, within MPMX19_00853at 884.370 kb on - strand, within MPMX19_00853at 884.370 kb on - strand, within MPMX19_00853at 884.370 kb on - strand, within MPMX19_00853at 884.370 kb on - strand, within MPMX19_00853at 884.370 kb on - strand, within MPMX19_00853at 884.370 kb on - strand, within MPMX19_00853at 884.540 kb on + strand, within MPMX19_00853at 884.540 kb on + strand, within MPMX19_00853at 884.540 kb on + strand, within MPMX19_00853at 884.540 kb on + strand, within MPMX19_00853at 884.540 kb on + strand, within MPMX19_00853at 884.540 kb on + strand, within MPMX19_00853at 884.541 kb on - strand, within MPMX19_00853at 884.541 kb on - strand, within MPMX19_00853at 884.541 kb on - strand, within MPMX19_00853at 884.541 kb on - strand, within MPMX19_00853at 884.541 kb on - strand, within MPMX19_00853at 884.541 kb on - strand, within MPMX19_00853at 884.541 kb on - strand, within MPMX19_00853at 884.541 kb on - strand, within MPMX19_00853at 884.541 kb on - strand, within MPMX19_00853at 884.541 kb on - strand, within MPMX19_00853at 884.598 kb on - strand, within MPMX19_00853at 885.252 kb on + strandat 885.252 kb on + strandat 885.252 kb on + strandat 885.253 kb on - strandat 885.253 kb on - strandat 885.253 kb on - strandat 885.253 kb on - strandat 885.253 kb on - strandat 885.570 kb on + strand, within MPMX19_00854at 885.570 kb on + strand, within MPMX19_00854at 885.570 kb on + strand, within MPMX19_00854at 885.570 kb on + strand, within MPMX19_00854at 885.570 kb on + strand, within MPMX19_00854at 885.570 kb on + strand, within MPMX19_00854at 885.570 kb on + strand, within MPMX19_00854at 885.570 kb on + strand, within MPMX19_00854at 885.570 kb on + strand, within MPMX19_00854at 885.570 kb on + strand, within MPMX19_00854at 885.570 kb on + strand, within MPMX19_00854at 885.570 kb on + strand, within MPMX19_00854at 885.570 kb on + strand, within MPMX19_00854at 885.571 kb on - strand, within MPMX19_00854at 885.571 kb on - strand, within MPMX19_00854at 885.571 kb on - strand, within MPMX19_00854at 885.571 kb on - strand, within MPMX19_00854at 885.571 kb on - strand, within MPMX19_00854at 885.571 kb on - strand, within MPMX19_00854at 885.571 kb on - strand, within MPMX19_00854at 885.571 kb on - strand, within MPMX19_00854at 885.571 kb on - strand, within MPMX19_00854at 885.571 kb on - strand, within MPMX19_00854at 885.571 kb on - strand, within MPMX19_00854at 885.684 kb on + strand, within MPMX19_00854at 885.685 kb on - strand, within MPMX19_00854

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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883,515 - MPMX19_00852 0.14 +0.2
884,122 + MPMX19_00852 0.85 +0.8
884,122 + MPMX19_00852 0.85 -1.4
884,122 + MPMX19_00852 0.85 -0.5
884,123 - MPMX19_00852 0.85 +0.6
884,344 + MPMX19_00853 0.14 +1.2
884,344 + MPMX19_00853 0.14 -0.7
884,344 + MPMX19_00853 0.14 -0.4
884,344 + MPMX19_00853 0.14 +0.3
884,344 + MPMX19_00853 0.14 -0.4
884,344 + MPMX19_00853 0.14 -2.1
884,344 + MPMX19_00853 0.14 -0.2
884,344 + MPMX19_00853 0.14 +0.8
884,344 + MPMX19_00853 0.14 -0.7
884,344 + MPMX19_00853 0.14 +1.6
884,344 + MPMX19_00853 0.14 +0.3
884,344 + MPMX19_00853 0.14 -0.2
884,344 + MPMX19_00853 0.14 +0.6
884,344 + MPMX19_00853 0.14 -0.2
884,344 + MPMX19_00853 0.14 -0.8
884,344 + MPMX19_00853 0.14 -0.2
884,344 + MPMX19_00853 0.14 +0.6
884,344 + MPMX19_00853 0.14 -0.4
884,345 - MPMX19_00853 0.14 +0.3
884,345 - MPMX19_00853 0.14 +0.1
884,345 - MPMX19_00853 0.14 -0.4
884,345 - MPMX19_00853 0.14 +1.1
884,345 - MPMX19_00853 0.14 +1.2
884,345 - MPMX19_00853 0.14 -1.2
884,345 - MPMX19_00853 0.14 -0.9
884,345 - MPMX19_00853 0.14 +0.1
884,345 - MPMX19_00853 0.14 +1.6
884,345 - MPMX19_00853 0.14 +0.8
884,345 - MPMX19_00853 0.14 +0.4
884,345 - MPMX19_00853 0.14 -1.3
884,345 - MPMX19_00853 0.14 -0.7
884,345 - MPMX19_00853 0.14 +0.1
884,345 - MPMX19_00853 0.14 +0.9
884,345 - MPMX19_00853 0.14 +0.4
884,345 - MPMX19_00853 0.14 +1.1
884,345 - MPMX19_00853 0.14 +0.8
884,345 - MPMX19_00853 0.14 +1.6
884,345 - MPMX19_00853 0.14 +0.6
884,345 - MPMX19_00853 0.14 +2.6
884,345 - MPMX19_00853 0.14 +0.1
884,345 - MPMX19_00853 0.14 +0.6
884,345 - MPMX19_00853 0.14 +0.3
884,345 - MPMX19_00853 0.14 +1.0
884,345 - MPMX19_00853 0.14 -1.8
884,345 - MPMX19_00853 0.14 +1.2
884,369 + MPMX19_00853 0.17 +0.1
884,369 + MPMX19_00853 0.17 -0.9
884,369 + MPMX19_00853 0.17 -1.1
884,369 + MPMX19_00853 0.17 -1.5
884,369 + MPMX19_00853 0.17 +0.1
884,369 + MPMX19_00853 0.17 +2.2
884,369 + MPMX19_00853 0.17 +0.3
884,369 + MPMX19_00853 0.17 -0.9
884,369 + MPMX19_00853 0.17 -0.4
884,369 + MPMX19_00853 0.17 +0.6
884,369 + MPMX19_00853 0.17 +1.6
884,370 - MPMX19_00853 0.17 -0.9
884,370 - MPMX19_00853 0.17 +0.6
884,370 - MPMX19_00853 0.17 +0.3
884,370 - MPMX19_00853 0.17 -1.6
884,370 - MPMX19_00853 0.17 +1.2
884,370 - MPMX19_00853 0.17 -0.8
884,370 - MPMX19_00853 0.17 -1.1
884,370 - MPMX19_00853 0.17 +1.6
884,370 - MPMX19_00853 0.17 +1.6
884,540 + MPMX19_00853 0.41 -1.2
884,540 + MPMX19_00853 0.41 -2.4
884,540 + MPMX19_00853 0.41 -0.7
884,540 + MPMX19_00853 0.41 -0.4
884,540 + MPMX19_00853 0.41 -0.2
884,540 + MPMX19_00853 0.41 -0.8
884,541 - MPMX19_00853 0.41 -0.4
884,541 - MPMX19_00853 0.41 -1.7
884,541 - MPMX19_00853 0.41 +1.3
884,541 - MPMX19_00853 0.41 +0.5
884,541 - MPMX19_00853 0.41 +1.6
884,541 - MPMX19_00853 0.41 -0.4
884,541 - MPMX19_00853 0.41 -1.8
884,541 - MPMX19_00853 0.41 -0.4
884,541 - MPMX19_00853 0.41 +0.9
884,541 - MPMX19_00853 0.41 +2.0
884,598 - MPMX19_00853 0.48 +0.6
885,252 + -0.6
885,252 + +0.1
885,252 + +1.4
885,253 - +0.9
885,253 - -0.7
885,253 - +1.3
885,253 - +1.1
885,253 - -0.5
885,570 + MPMX19_00854 0.16 -0.6
885,570 + MPMX19_00854 0.16 +0.1
885,570 + MPMX19_00854 0.16 -0.7
885,570 + MPMX19_00854 0.16 +0.6
885,570 + MPMX19_00854 0.16 +2.1
885,570 + MPMX19_00854 0.16 +0.6
885,570 + MPMX19_00854 0.16 +0.4
885,570 + MPMX19_00854 0.16 +1.1
885,570 + MPMX19_00854 0.16 -0.5
885,570 + MPMX19_00854 0.16 +0.9
885,570 + MPMX19_00854 0.16 -1.3
885,570 + MPMX19_00854 0.16 -1.2
885,570 + MPMX19_00854 0.16 +0.5
885,571 - MPMX19_00854 0.16 -0.1
885,571 - MPMX19_00854 0.16 -0.4
885,571 - MPMX19_00854 0.16 +0.3
885,571 - MPMX19_00854 0.16 +2.8
885,571 - MPMX19_00854 0.16 -0.1
885,571 - MPMX19_00854 0.16 +1.6
885,571 - MPMX19_00854 0.16 +0.3
885,571 - MPMX19_00854 0.16 +1.0
885,571 - MPMX19_00854 0.16 +0.6
885,571 - MPMX19_00854 0.16 +0.3
885,571 - MPMX19_00854 0.16 -1.8
885,684 + MPMX19_00854 0.20 +0.1
885,685 - MPMX19_00854 0.20 +1.2

Or see this region's nucleotide sequence