Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_01861

Experiment: UV exposure at 150J/m2 for 20 seconds

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_01859 and MPMX26_01860 overlap by 20 nucleotidesMPMX26_01860 and MPMX26_01861 are separated by 105 nucleotidesMPMX26_01861 and MPMX26_01862 are separated by 196 nucleotides MPMX26_01859: MPMX26_01859 - Methionine import ATP-binding protein MetN, at 1,897,027 to 1,898,097 _01859 MPMX26_01860: MPMX26_01860 - Methionine import system permease protein MetP, at 1,898,078 to 1,898,737 _01860 MPMX26_01861: MPMX26_01861 - Ribosome-binding ATPase YchF, at 1,898,843 to 1,899,934 _01861 MPMX26_01862: MPMX26_01862 - hypothetical protein, at 1,900,131 to 1,901,093 _01862 Position (kb) 1898 1899 1900Strain fitness (log2 ratio) -3 -2 -1 0 1at 1898.295 kb on - strand, within MPMX26_01860at 1898.305 kb on - strand, within MPMX26_01860at 1898.861 kb on + strandat 1898.871 kb on + strandat 1898.886 kb on + strandat 1898.908 kb on + strandat 1898.908 kb on + strandat 1898.927 kb on + strandat 1898.967 kb on + strand, within MPMX26_01861at 1898.990 kb on + strand, within MPMX26_01861at 1898.990 kb on + strand, within MPMX26_01861at 1898.995 kb on + strand, within MPMX26_01861at 1899.011 kb on + strand, within MPMX26_01861at 1899.012 kb on + strand, within MPMX26_01861at 1899.027 kb on + strand, within MPMX26_01861at 1899.027 kb on + strand, within MPMX26_01861at 1899.060 kb on + strand, within MPMX26_01861at 1899.082 kb on + strand, within MPMX26_01861at 1899.082 kb on + strand, within MPMX26_01861at 1899.089 kb on + strand, within MPMX26_01861at 1899.095 kb on + strand, within MPMX26_01861at 1899.190 kb on + strand, within MPMX26_01861at 1899.209 kb on + strand, within MPMX26_01861at 1899.224 kb on + strand, within MPMX26_01861at 1899.238 kb on + strand, within MPMX26_01861at 1899.248 kb on + strand, within MPMX26_01861at 1899.322 kb on + strand, within MPMX26_01861at 1899.354 kb on + strand, within MPMX26_01861at 1899.358 kb on + strand, within MPMX26_01861at 1899.364 kb on + strand, within MPMX26_01861at 1899.364 kb on + strand, within MPMX26_01861at 1899.364 kb on + strand, within MPMX26_01861at 1899.364 kb on + strand, within MPMX26_01861at 1899.364 kb on + strand, within MPMX26_01861at 1899.364 kb on + strand, within MPMX26_01861at 1899.364 kb on + strand, within MPMX26_01861at 1899.364 kb on + strand, within MPMX26_01861at 1899.364 kb on + strand, within MPMX26_01861at 1899.364 kb on + strand, within MPMX26_01861at 1899.364 kb on + strand, within MPMX26_01861at 1899.364 kb on + strand, within MPMX26_01861at 1899.364 kb on + strand, within MPMX26_01861at 1899.370 kb on + strand, within MPMX26_01861at 1899.548 kb on + strand, within MPMX26_01861at 1899.550 kb on + strand, within MPMX26_01861at 1899.587 kb on + strand, within MPMX26_01861at 1899.602 kb on + strand, within MPMX26_01861at 1899.604 kb on + strand, within MPMX26_01861at 1899.619 kb on + strand, within MPMX26_01861at 1899.659 kb on + strand, within MPMX26_01861at 1899.700 kb on + strand, within MPMX26_01861at 1899.744 kb on + strand, within MPMX26_01861at 1899.759 kb on + strand, within MPMX26_01861at 1899.819 kb on + strand, within MPMX26_01861at 1899.819 kb on + strand, within MPMX26_01861at 1899.829 kb on + strandat 1899.829 kb on + strandat 1899.829 kb on + strandat 1899.829 kb on + strandat 1899.829 kb on + strandat 1899.829 kb on + strandat 1899.829 kb on + strandat 1899.829 kb on + strandat 1899.829 kb on + strandat 1899.829 kb on + strandat 1899.846 kb on + strandat 1899.898 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction UV exposure at 150J/m2 for 20 seconds
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1,898,295 - MPMX26_01860 0.33 +0.3
1,898,305 - MPMX26_01860 0.34 -0.6
1,898,861 + -0.7
1,898,871 + -1.0
1,898,886 + -0.8
1,898,908 + -1.4
1,898,908 + -1.7
1,898,927 + -1.2
1,898,967 + MPMX26_01861 0.11 -0.3
1,898,990 + MPMX26_01861 0.13 -1.0
1,898,990 + MPMX26_01861 0.13 -1.4
1,898,995 + MPMX26_01861 0.14 -0.7
1,899,011 + MPMX26_01861 0.15 -1.4
1,899,012 + MPMX26_01861 0.15 -0.0
1,899,027 + MPMX26_01861 0.17 +0.3
1,899,027 + MPMX26_01861 0.17 +0.4
1,899,060 + MPMX26_01861 0.20 -1.3
1,899,082 + MPMX26_01861 0.22 -0.2
1,899,082 + MPMX26_01861 0.22 -0.9
1,899,089 + MPMX26_01861 0.23 -0.2
1,899,095 + MPMX26_01861 0.23 -1.7
1,899,190 + MPMX26_01861 0.32 -0.5
1,899,209 + MPMX26_01861 0.34 -0.8
1,899,224 + MPMX26_01861 0.35 -2.4
1,899,238 + MPMX26_01861 0.36 -1.4
1,899,248 + MPMX26_01861 0.37 -1.2
1,899,322 + MPMX26_01861 0.44 -1.3
1,899,354 + MPMX26_01861 0.47 -0.7
1,899,358 + MPMX26_01861 0.47 -1.4
1,899,364 + MPMX26_01861 0.48 -1.1
1,899,364 + MPMX26_01861 0.48 -0.8
1,899,364 + MPMX26_01861 0.48 -1.1
1,899,364 + MPMX26_01861 0.48 -0.5
1,899,364 + MPMX26_01861 0.48 -1.0
1,899,364 + MPMX26_01861 0.48 -0.5
1,899,364 + MPMX26_01861 0.48 +0.1
1,899,364 + MPMX26_01861 0.48 -3.4
1,899,364 + MPMX26_01861 0.48 +0.4
1,899,364 + MPMX26_01861 0.48 -1.3
1,899,364 + MPMX26_01861 0.48 -0.9
1,899,364 + MPMX26_01861 0.48 -1.7
1,899,364 + MPMX26_01861 0.48 -1.2
1,899,370 + MPMX26_01861 0.48 -1.3
1,899,548 + MPMX26_01861 0.65 -1.6
1,899,550 + MPMX26_01861 0.65 -1.0
1,899,587 + MPMX26_01861 0.68 +0.1
1,899,602 + MPMX26_01861 0.70 -1.9
1,899,604 + MPMX26_01861 0.70 -0.4
1,899,619 + MPMX26_01861 0.71 -1.5
1,899,659 + MPMX26_01861 0.75 -0.7
1,899,700 + MPMX26_01861 0.78 -2.1
1,899,744 + MPMX26_01861 0.83 -1.2
1,899,759 + MPMX26_01861 0.84 -0.1
1,899,819 + MPMX26_01861 0.89 -1.2
1,899,819 + MPMX26_01861 0.89 +0.1
1,899,829 + -2.2
1,899,829 + +0.1
1,899,829 + -1.4
1,899,829 + -0.8
1,899,829 + -0.9
1,899,829 + -3.5
1,899,829 + -0.4
1,899,829 + +0.0
1,899,829 + -1.2
1,899,829 + -2.3
1,899,846 + -0.5
1,899,898 + -0.7

Or see this region's nucleotide sequence