Experiment: NLN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05347 and MPMX19_05348 are separated by 344 nucleotides MPMX19_05348 and MPMX19_05349 overlap by 4 nucleotides MPMX19_05349 and MPMX19_05350 overlap by 4 nucleotides
MPMX19_05347: MPMX19_05347 - hypothetical protein, at 18,723 to 19,607
_05347
MPMX19_05348: MPMX19_05348 - hypothetical protein, at 19,952 to 21,628
_05348
MPMX19_05349: MPMX19_05349 - hypothetical protein, at 21,625 to 22,563
_05349
MPMX19_05350: MPMX19_05350 - hypothetical protein, at 22,560 to 24,191
_05350
Position (kb) 19
20
21
22 Strain fitness (log2 ratio) -2
-1
0
1
2 at 18.967 kb on + strand, within MPMX19_05347 at 18.967 kb on + strand, within MPMX19_05347 at 18.967 kb on + strand, within MPMX19_05347 at 18.967 kb on + strand, within MPMX19_05347 at 18.967 kb on + strand, within MPMX19_05347 at 18.968 kb on - strand, within MPMX19_05347 at 18.968 kb on - strand, within MPMX19_05347 at 18.968 kb on - strand, within MPMX19_05347 at 18.968 kb on - strand, within MPMX19_05347 at 19.249 kb on + strand, within MPMX19_05347 at 19.249 kb on + strand, within MPMX19_05347 at 19.249 kb on + strand, within MPMX19_05347 at 19.249 kb on + strand, within MPMX19_05347 at 19.249 kb on + strand, within MPMX19_05347 at 19.337 kb on - strand, within MPMX19_05347 at 19.337 kb on - strand, within MPMX19_05347 at 19.369 kb on + strand, within MPMX19_05347 at 19.369 kb on + strand, within MPMX19_05347 at 19.369 kb on + strand, within MPMX19_05347 at 19.369 kb on + strand, within MPMX19_05347 at 19.369 kb on + strand, within MPMX19_05347 at 19.369 kb on + strand, within MPMX19_05347 at 19.369 kb on + strand, within MPMX19_05347 at 19.369 kb on + strand, within MPMX19_05347 at 19.369 kb on + strand, within MPMX19_05347 at 19.369 kb on + strand, within MPMX19_05347 at 19.369 kb on + strand, within MPMX19_05347 at 19.369 kb on + strand, within MPMX19_05347 at 19.369 kb on + strand, within MPMX19_05347 at 19.369 kb on + strand, within MPMX19_05347 at 19.370 kb on - strand, within MPMX19_05347 at 19.370 kb on - strand, within MPMX19_05347 at 19.370 kb on - strand, within MPMX19_05347 at 19.370 kb on - strand, within MPMX19_05347 at 19.370 kb on - strand, within MPMX19_05347 at 19.370 kb on - strand, within MPMX19_05347 at 19.370 kb on - strand, within MPMX19_05347 at 19.370 kb on - strand, within MPMX19_05347 at 19.370 kb on - strand, within MPMX19_05347 at 19.370 kb on - strand, within MPMX19_05347 at 19.370 kb on - strand, within MPMX19_05347 at 19.646 kb on + strand at 19.647 kb on - strand at 19.700 kb on + strand at 19.789 kb on - strand at 19.864 kb on + strand at 19.864 kb on + strand at 19.864 kb on + strand at 19.864 kb on + strand at 19.864 kb on + strand at 19.864 kb on + strand at 19.864 kb on + strand at 19.864 kb on + strand at 19.864 kb on + strand at 19.864 kb on + strand at 19.913 kb on + strand at 19.913 kb on + strand at 19.919 kb on + strand at 20.016 kb on + strand at 20.016 kb on + strand at 20.016 kb on + strand at 20.017 kb on - strand at 20.301 kb on + strand, within MPMX19_05348 at 20.301 kb on + strand, within MPMX19_05348 at 20.301 kb on + strand, within MPMX19_05348 at 22.597 kb on + strand at 22.597 kb on + strand at 22.597 kb on + strand at 22.597 kb on + strand at 22.597 kb on + strand at 22.597 kb on + strand at 22.597 kb on + strand at 22.597 kb on + strand at 22.597 kb on + strand at 22.597 kb on + strand at 22.597 kb on + strand at 22.597 kb on + strand at 22.597 kb on + strand at 22.597 kb on + strand at 22.597 kb on + strand at 22.597 kb on + strand at 22.597 kb on + strand at 22.597 kb on + strand at 22.597 kb on + strand at 22.597 kb on + strand at 22.597 kb on + strand at 22.597 kb on + strand at 22.597 kb on + strand at 22.598 kb on - strand at 22.598 kb on - strand at 22.598 kb on - strand at 22.598 kb on - strand at 22.598 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NLN remove 18,967 + MPMX19_05347 0.28 +1.2 18,967 + MPMX19_05347 0.28 -0.9 18,967 + MPMX19_05347 0.28 -1.6 18,967 + MPMX19_05347 0.28 -1.2 18,967 + MPMX19_05347 0.28 +1.1 18,968 - MPMX19_05347 0.28 +0.4 18,968 - MPMX19_05347 0.28 -1.6 18,968 - MPMX19_05347 0.28 -0.6 18,968 - MPMX19_05347 0.28 -0.1 19,249 + MPMX19_05347 0.59 -2.3 19,249 + MPMX19_05347 0.59 -2.0 19,249 + MPMX19_05347 0.59 +0.1 19,249 + MPMX19_05347 0.59 +0.5 19,249 + MPMX19_05347 0.59 -0.4 19,337 - MPMX19_05347 0.69 +0.1 19,337 - MPMX19_05347 0.69 +0.4 19,369 + MPMX19_05347 0.73 +0.4 19,369 + MPMX19_05347 0.73 -0.3 19,369 + MPMX19_05347 0.73 -1.2 19,369 + MPMX19_05347 0.73 +0.1 19,369 + MPMX19_05347 0.73 +0.5 19,369 + MPMX19_05347 0.73 -1.2 19,369 + MPMX19_05347 0.73 -0.1 19,369 + MPMX19_05347 0.73 -0.2 19,369 + MPMX19_05347 0.73 -0.4 19,369 + MPMX19_05347 0.73 -0.3 19,369 + MPMX19_05347 0.73 -0.2 19,369 + MPMX19_05347 0.73 -0.8 19,369 + MPMX19_05347 0.73 -2.2 19,369 + MPMX19_05347 0.73 -0.4 19,370 - MPMX19_05347 0.73 +1.2 19,370 - MPMX19_05347 0.73 +1.6 19,370 - MPMX19_05347 0.73 -0.5 19,370 - MPMX19_05347 0.73 +0.1 19,370 - MPMX19_05347 0.73 -2.6 19,370 - MPMX19_05347 0.73 +0.9 19,370 - MPMX19_05347 0.73 -0.5 19,370 - MPMX19_05347 0.73 -0.4 19,370 - MPMX19_05347 0.73 +1.7 19,370 - MPMX19_05347 0.73 +1.3 19,370 - MPMX19_05347 0.73 -0.4 19,646 + -1.2 19,647 - -1.3 19,700 + -0.4 19,789 - -0.6 19,864 + +0.4 19,864 + -2.6 19,864 + +0.4 19,864 + -0.1 19,864 + -0.4 19,864 + -0.8 19,864 + -0.8 19,864 + -0.6 19,864 + -1.2 19,864 + +0.4 19,913 + -1.2 19,913 + +0.1 19,919 + -0.6 20,016 + +2.4 20,016 + +0.4 20,016 + +0.8 20,017 - -2.4 20,301 + MPMX19_05348 0.21 +0.7 20,301 + MPMX19_05348 0.21 +1.4 20,301 + MPMX19_05348 0.21 +1.1 22,597 + -0.4 22,597 + -0.9 22,597 + +0.5 22,597 + +0.0 22,597 + -2.2 22,597 + -2.2 22,597 + +0.7 22,597 + -1.0 22,597 + -1.3 22,597 + -0.4 22,597 + +0.8 22,597 + -0.6 22,597 + +0.4 22,597 + +0.9 22,597 + +0.4 22,597 + -0.2 22,597 + -0.4 22,597 + +0.6 22,597 + -0.4 22,597 + -1.2 22,597 + -0.6 22,597 + -1.2 22,597 + +0.8 22,598 - +0.9 22,598 - -0.1 22,598 - -2.0 22,598 - -0.2 22,598 - +0.1
Or see this region's nucleotide sequence