Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_02178

Experiment: UV exposure at 150J/m2 for 10 seconds

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_02176 and MPMX26_02177 are separated by 51 nucleotidesMPMX26_02177 and MPMX26_02178 are separated by 183 nucleotidesMPMX26_02178 and MPMX26_02179 are separated by 98 nucleotides MPMX26_02176: MPMX26_02176 - hypothetical protein, at 2,230,726 to 2,231,136 _02176 MPMX26_02177: MPMX26_02177 - Peroxiredoxin, at 2,231,188 to 2,231,655 _02177 MPMX26_02178: MPMX26_02178 - Bifunctional NMN adenylyltransferase/Nudix hydrolase, at 2,231,839 to 2,232,408 _02178 MPMX26_02179: MPMX26_02179 - 2,3-dehydroadipyl-CoA hydratase, at 2,232,507 to 2,233,355 _02179 Position (kb) 2231 2232 2233Strain fitness (log2 ratio) -2 -1 0 1 2at 2230.845 kb on + strand, within MPMX26_02176at 2230.855 kb on + strand, within MPMX26_02176at 2230.860 kb on + strand, within MPMX26_02176at 2230.860 kb on + strand, within MPMX26_02176at 2230.860 kb on + strand, within MPMX26_02176at 2230.934 kb on + strand, within MPMX26_02176at 2230.939 kb on + strand, within MPMX26_02176at 2230.981 kb on + strand, within MPMX26_02176at 2230.991 kb on + strand, within MPMX26_02176at 2231.109 kb on + strandat 2231.155 kb on + strandat 2231.185 kb on + strandat 2231.192 kb on + strandat 2231.223 kb on + strandat 2231.242 kb on + strand, within MPMX26_02177at 2231.300 kb on + strand, within MPMX26_02177at 2231.310 kb on + strand, within MPMX26_02177at 2231.315 kb on + strand, within MPMX26_02177at 2231.320 kb on + strand, within MPMX26_02177at 2231.320 kb on + strand, within MPMX26_02177at 2231.320 kb on + strand, within MPMX26_02177at 2231.320 kb on + strand, within MPMX26_02177at 2231.320 kb on + strand, within MPMX26_02177at 2231.320 kb on + strand, within MPMX26_02177at 2231.355 kb on + strand, within MPMX26_02177at 2231.377 kb on + strand, within MPMX26_02177at 2231.377 kb on + strand, within MPMX26_02177at 2231.377 kb on + strand, within MPMX26_02177at 2231.377 kb on + strand, within MPMX26_02177at 2231.400 kb on + strand, within MPMX26_02177at 2231.451 kb on + strand, within MPMX26_02177at 2231.451 kb on + strand, within MPMX26_02177at 2231.451 kb on + strand, within MPMX26_02177at 2231.451 kb on + strand, within MPMX26_02177at 2231.582 kb on + strand, within MPMX26_02177at 2231.617 kb on + strandat 2231.792 kb on - strandat 2231.865 kb on - strandat 2232.510 kb on + strandat 2232.510 kb on + strandat 2232.510 kb on + strandat 2232.510 kb on + strandat 2232.510 kb on + strandat 2232.517 kb on + strandat 2232.681 kb on + strand, within MPMX26_02179at 2232.764 kb on + strand, within MPMX26_02179at 2232.893 kb on + strand, within MPMX26_02179at 2232.893 kb on + strand, within MPMX26_02179at 2232.893 kb on + strand, within MPMX26_02179at 2232.893 kb on + strand, within MPMX26_02179at 2232.893 kb on + strand, within MPMX26_02179at 2232.893 kb on + strand, within MPMX26_02179at 2232.893 kb on + strand, within MPMX26_02179at 2232.893 kb on + strand, within MPMX26_02179at 2232.893 kb on + strand, within MPMX26_02179at 2232.893 kb on + strand, within MPMX26_02179at 2232.893 kb on + strand, within MPMX26_02179at 2232.893 kb on + strand, within MPMX26_02179at 2232.893 kb on + strand, within MPMX26_02179at 2232.893 kb on + strand, within MPMX26_02179at 2232.893 kb on + strand, within MPMX26_02179at 2232.903 kb on + strand, within MPMX26_02179at 2232.990 kb on + strand, within MPMX26_02179at 2232.995 kb on + strand, within MPMX26_02179at 2233.013 kb on + strand, within MPMX26_02179at 2233.059 kb on + strand, within MPMX26_02179at 2233.059 kb on + strand, within MPMX26_02179at 2233.064 kb on + strand, within MPMX26_02179at 2233.199 kb on + strand, within MPMX26_02179at 2233.241 kb on + strand, within MPMX26_02179at 2233.295 kb on + strandat 2233.295 kb on + strandat 2233.295 kb on + strandat 2233.305 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction UV exposure at 150J/m2 for 10 seconds
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2,230,845 + MPMX26_02176 0.29 +0.3
2,230,855 + MPMX26_02176 0.31 +0.1
2,230,860 + MPMX26_02176 0.33 +0.5
2,230,860 + MPMX26_02176 0.33 +0.1
2,230,860 + MPMX26_02176 0.33 -0.1
2,230,934 + MPMX26_02176 0.51 -0.3
2,230,939 + MPMX26_02176 0.52 +0.4
2,230,981 + MPMX26_02176 0.62 +0.1
2,230,991 + MPMX26_02176 0.64 +0.3
2,231,109 + -0.1
2,231,155 + +0.0
2,231,185 + +0.2
2,231,192 + +0.2
2,231,223 + -0.1
2,231,242 + MPMX26_02177 0.12 -0.1
2,231,300 + MPMX26_02177 0.24 +0.6
2,231,310 + MPMX26_02177 0.26 +0.4
2,231,315 + MPMX26_02177 0.27 +0.2
2,231,320 + MPMX26_02177 0.28 +0.2
2,231,320 + MPMX26_02177 0.28 -1.9
2,231,320 + MPMX26_02177 0.28 -0.3
2,231,320 + MPMX26_02177 0.28 -0.5
2,231,320 + MPMX26_02177 0.28 -0.8
2,231,320 + MPMX26_02177 0.28 -0.7
2,231,355 + MPMX26_02177 0.36 -0.5
2,231,377 + MPMX26_02177 0.40 -0.1
2,231,377 + MPMX26_02177 0.40 -0.4
2,231,377 + MPMX26_02177 0.40 -0.6
2,231,377 + MPMX26_02177 0.40 +0.4
2,231,400 + MPMX26_02177 0.45 +0.2
2,231,451 + MPMX26_02177 0.56 -0.7
2,231,451 + MPMX26_02177 0.56 -0.3
2,231,451 + MPMX26_02177 0.56 -0.3
2,231,451 + MPMX26_02177 0.56 +0.4
2,231,582 + MPMX26_02177 0.84 +0.1
2,231,617 + +0.3
2,231,792 - -0.1
2,231,865 - -0.7
2,232,510 + -0.2
2,232,510 + -1.8
2,232,510 + +0.3
2,232,510 + -1.1
2,232,510 + -2.2
2,232,517 + -0.7
2,232,681 + MPMX26_02179 0.20 +0.1
2,232,764 + MPMX26_02179 0.30 -0.3
2,232,893 + MPMX26_02179 0.45 -0.3
2,232,893 + MPMX26_02179 0.45 +0.3
2,232,893 + MPMX26_02179 0.45 +1.9
2,232,893 + MPMX26_02179 0.45 +0.1
2,232,893 + MPMX26_02179 0.45 +0.1
2,232,893 + MPMX26_02179 0.45 -0.2
2,232,893 + MPMX26_02179 0.45 +0.2
2,232,893 + MPMX26_02179 0.45 -0.6
2,232,893 + MPMX26_02179 0.45 +0.6
2,232,893 + MPMX26_02179 0.45 +1.5
2,232,893 + MPMX26_02179 0.45 -1.1
2,232,893 + MPMX26_02179 0.45 -0.6
2,232,893 + MPMX26_02179 0.45 +0.1
2,232,893 + MPMX26_02179 0.45 -0.3
2,232,893 + MPMX26_02179 0.45 +0.5
2,232,903 + MPMX26_02179 0.47 -0.2
2,232,990 + MPMX26_02179 0.57 -0.9
2,232,995 + MPMX26_02179 0.57 -0.2
2,233,013 + MPMX26_02179 0.60 -0.3
2,233,059 + MPMX26_02179 0.65 -0.7
2,233,059 + MPMX26_02179 0.65 -0.4
2,233,064 + MPMX26_02179 0.66 +0.5
2,233,199 + MPMX26_02179 0.82 +0.2
2,233,241 + MPMX26_02179 0.86 +0.5
2,233,295 + +0.1
2,233,295 + -0.0
2,233,295 + +0.8
2,233,305 + +0.4

Or see this region's nucleotide sequence