Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_00452

Experiment: TSB with Dermcidin 2 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_00450 and MPMX26_00451 are separated by 2 nucleotidesMPMX26_00451 and MPMX26_00452 overlap by 4 nucleotidesMPMX26_00452 and MPMX26_00453 overlap by 11 nucleotidesMPMX26_00453 and MPMX26_00454 are separated by 27 nucleotides MPMX26_00450: MPMX26_00450 - dTDP-glucose 4,6-dehydratase 2, at 483,768 to 484,835 _00450 MPMX26_00451: MPMX26_00451 - dTDP-4-dehydrorhamnose reductase, at 484,838 to 485,731 _00451 MPMX26_00452: MPMX26_00452 - Glucose-1-phosphate thymidylyltransferase 1, at 485,728 to 486,618 _00452 MPMX26_00453: MPMX26_00453 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 486,608 to 487,159 _00453 MPMX26_00454: MPMX26_00454 - hypothetical protein, at 487,187 to 488,206 _00454 Position (kb) 485 486 487Strain fitness (log2 ratio) -2 -1 0 1 2at 484.774 kb on + strandat 484.774 kb on + strandat 484.775 kb on + strandat 484.784 kb on + strandat 484.784 kb on + strandat 484.880 kb on + strandat 484.880 kb on + strandat 484.880 kb on + strandat 484.880 kb on + strandat 484.880 kb on + strandat 484.880 kb on + strandat 484.880 kb on + strandat 484.901 kb on + strandat 484.906 kb on + strandat 484.919 kb on + strandat 484.920 kb on + strandat 484.943 kb on + strand, within MPMX26_00451at 485.027 kb on + strand, within MPMX26_00451at 485.029 kb on + strand, within MPMX26_00451at 485.036 kb on + strand, within MPMX26_00451at 485.057 kb on + strand, within MPMX26_00451at 485.057 kb on + strand, within MPMX26_00451at 485.062 kb on + strand, within MPMX26_00451at 485.062 kb on + strand, within MPMX26_00451at 485.098 kb on + strand, within MPMX26_00451at 485.098 kb on + strand, within MPMX26_00451at 485.098 kb on + strand, within MPMX26_00451at 485.098 kb on + strand, within MPMX26_00451at 485.098 kb on + strand, within MPMX26_00451at 485.098 kb on + strand, within MPMX26_00451at 485.122 kb on + strand, within MPMX26_00451at 485.174 kb on + strand, within MPMX26_00451at 485.202 kb on + strand, within MPMX26_00451at 485.210 kb on + strand, within MPMX26_00451at 485.218 kb on + strand, within MPMX26_00451at 485.232 kb on + strand, within MPMX26_00451at 485.258 kb on + strand, within MPMX26_00451at 485.258 kb on + strand, within MPMX26_00451at 485.263 kb on + strand, within MPMX26_00451at 485.271 kb on + strand, within MPMX26_00451at 485.292 kb on + strand, within MPMX26_00451at 485.292 kb on + strand, within MPMX26_00451at 485.292 kb on + strand, within MPMX26_00451at 485.299 kb on + strand, within MPMX26_00451at 485.299 kb on + strand, within MPMX26_00451at 485.346 kb on + strand, within MPMX26_00451at 485.346 kb on + strand, within MPMX26_00451at 485.422 kb on + strand, within MPMX26_00451at 485.424 kb on + strand, within MPMX26_00451at 485.447 kb on + strand, within MPMX26_00451at 485.461 kb on + strand, within MPMX26_00451at 485.461 kb on + strand, within MPMX26_00451at 485.461 kb on + strand, within MPMX26_00451at 485.528 kb on + strand, within MPMX26_00451at 485.547 kb on + strand, within MPMX26_00451at 485.547 kb on + strand, within MPMX26_00451at 485.547 kb on + strand, within MPMX26_00451at 485.547 kb on + strand, within MPMX26_00451at 485.547 kb on + strand, within MPMX26_00451at 485.547 kb on + strand, within MPMX26_00451at 485.547 kb on + strand, within MPMX26_00451at 485.553 kb on + strand, within MPMX26_00451at 485.590 kb on + strand, within MPMX26_00451at 485.596 kb on + strand, within MPMX26_00451at 485.601 kb on + strand, within MPMX26_00451at 485.614 kb on + strand, within MPMX26_00451at 485.616 kb on + strand, within MPMX26_00451at 485.618 kb on + strand, within MPMX26_00451at 485.626 kb on + strand, within MPMX26_00451at 485.628 kb on + strand, within MPMX26_00451at 485.671 kb on + strandat 485.671 kb on + strandat 485.675 kb on + strandat 485.689 kb on + strandat 485.694 kb on + strandat 485.694 kb on + strandat 485.694 kb on + strandat 485.706 kb on + strandat 485.706 kb on + strandat 485.746 kb on + strandat 485.770 kb on + strandat 485.771 kb on + strandat 485.782 kb on + strandat 485.791 kb on + strandat 485.831 kb on + strand, within MPMX26_00452at 485.857 kb on + strand, within MPMX26_00452at 485.857 kb on + strand, within MPMX26_00452at 485.884 kb on + strand, within MPMX26_00452at 485.884 kb on + strand, within MPMX26_00452at 485.902 kb on + strand, within MPMX26_00452at 485.908 kb on + strand, within MPMX26_00452at 485.921 kb on + strand, within MPMX26_00452at 485.954 kb on + strand, within MPMX26_00452at 485.954 kb on + strand, within MPMX26_00452at 485.974 kb on + strand, within MPMX26_00452at 485.974 kb on + strand, within MPMX26_00452at 485.974 kb on + strand, within MPMX26_00452at 485.993 kb on + strand, within MPMX26_00452at 485.993 kb on + strand, within MPMX26_00452at 486.016 kb on + strand, within MPMX26_00452at 486.016 kb on + strand, within MPMX26_00452at 486.024 kb on + strand, within MPMX26_00452at 486.108 kb on + strand, within MPMX26_00452at 486.113 kb on + strand, within MPMX26_00452at 486.125 kb on + strand, within MPMX26_00452at 486.125 kb on + strand, within MPMX26_00452at 486.133 kb on + strand, within MPMX26_00452at 486.133 kb on + strand, within MPMX26_00452at 486.144 kb on + strand, within MPMX26_00452at 486.144 kb on + strand, within MPMX26_00452at 486.144 kb on + strand, within MPMX26_00452at 486.144 kb on + strand, within MPMX26_00452at 486.175 kb on + strand, within MPMX26_00452at 486.199 kb on + strand, within MPMX26_00452at 486.253 kb on + strand, within MPMX26_00452at 486.253 kb on + strand, within MPMX26_00452at 486.253 kb on + strand, within MPMX26_00452at 486.254 kb on + strand, within MPMX26_00452at 486.277 kb on + strand, within MPMX26_00452at 486.277 kb on + strand, within MPMX26_00452at 486.336 kb on + strand, within MPMX26_00452at 486.385 kb on + strand, within MPMX26_00452at 486.416 kb on + strand, within MPMX26_00452at 486.455 kb on + strand, within MPMX26_00452at 486.545 kb on + strandat 486.575 kb on + strandat 486.693 kb on + strand, within MPMX26_00453at 486.693 kb on + strand, within MPMX26_00453at 486.708 kb on + strand, within MPMX26_00453at 486.788 kb on + strand, within MPMX26_00453at 486.838 kb on + strand, within MPMX26_00453at 486.843 kb on + strand, within MPMX26_00453at 486.843 kb on + strand, within MPMX26_00453at 486.848 kb on + strand, within MPMX26_00453at 486.848 kb on + strand, within MPMX26_00453at 486.848 kb on + strand, within MPMX26_00453at 486.892 kb on + strand, within MPMX26_00453at 486.908 kb on + strand, within MPMX26_00453at 486.913 kb on + strand, within MPMX26_00453at 486.918 kb on + strand, within MPMX26_00453at 486.918 kb on + strand, within MPMX26_00453at 486.918 kb on + strand, within MPMX26_00453at 486.918 kb on + strand, within MPMX26_00453at 486.918 kb on + strand, within MPMX26_00453at 486.918 kb on + strand, within MPMX26_00453at 486.918 kb on + strand, within MPMX26_00453at 486.918 kb on + strand, within MPMX26_00453at 486.918 kb on + strand, within MPMX26_00453at 486.918 kb on + strand, within MPMX26_00453at 486.918 kb on + strand, within MPMX26_00453at 486.920 kb on + strand, within MPMX26_00453at 486.920 kb on + strand, within MPMX26_00453at 486.920 kb on + strand, within MPMX26_00453at 486.920 kb on + strand, within MPMX26_00453at 486.966 kb on + strand, within MPMX26_00453at 486.966 kb on + strand, within MPMX26_00453at 486.987 kb on + strand, within MPMX26_00453at 486.989 kb on + strand, within MPMX26_00453at 486.989 kb on + strand, within MPMX26_00453at 487.020 kb on + strand, within MPMX26_00453at 487.068 kb on + strand, within MPMX26_00453at 487.068 kb on + strand, within MPMX26_00453at 487.068 kb on + strand, within MPMX26_00453at 487.068 kb on + strand, within MPMX26_00453at 487.068 kb on + strand, within MPMX26_00453at 487.102 kb on + strand, within MPMX26_00453at 487.104 kb on + strandat 487.112 kb on + strandat 487.112 kb on + strandat 487.112 kb on + strandat 487.112 kb on + strandat 487.112 kb on + strandat 487.112 kb on + strandat 487.114 kb on + strandat 487.114 kb on + strandat 487.298 kb on - strand, within MPMX26_00454at 487.308 kb on - strand, within MPMX26_00454at 487.316 kb on - strand, within MPMX26_00454at 487.459 kb on - strand, within MPMX26_00454at 487.534 kb on - strand, within MPMX26_00454at 487.536 kb on - strand, within MPMX26_00454at 487.547 kb on - strand, within MPMX26_00454at 487.591 kb on - strand, within MPMX26_00454

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB with Dermcidin 2 ug/mL
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484,774 + +0.5
484,774 + +0.8
484,775 + -0.7
484,784 + -2.4
484,784 + -1.4
484,880 + +0.3
484,880 + +0.3
484,880 + -0.7
484,880 + -0.3
484,880 + +0.1
484,880 + -0.6
484,880 + -0.2
484,901 + +0.2
484,906 + -0.5
484,919 + +0.1
484,920 + +0.1
484,943 + MPMX26_00451 0.12 +0.7
485,027 + MPMX26_00451 0.21 +0.2
485,029 + MPMX26_00451 0.21 -0.2
485,036 + MPMX26_00451 0.22 -1.3
485,057 + MPMX26_00451 0.24 -0.3
485,057 + MPMX26_00451 0.24 -1.4
485,062 + MPMX26_00451 0.25 -0.5
485,062 + MPMX26_00451 0.25 -0.4
485,098 + MPMX26_00451 0.29 +0.2
485,098 + MPMX26_00451 0.29 -0.9
485,098 + MPMX26_00451 0.29 +0.2
485,098 + MPMX26_00451 0.29 -0.8
485,098 + MPMX26_00451 0.29 -0.7
485,098 + MPMX26_00451 0.29 -0.3
485,122 + MPMX26_00451 0.32 +0.2
485,174 + MPMX26_00451 0.38 -0.8
485,202 + MPMX26_00451 0.41 -0.9
485,210 + MPMX26_00451 0.42 +0.3
485,218 + MPMX26_00451 0.43 +0.1
485,232 + MPMX26_00451 0.44 -0.0
485,258 + MPMX26_00451 0.47 -0.4
485,258 + MPMX26_00451 0.47 -0.3
485,263 + MPMX26_00451 0.48 -0.3
485,271 + MPMX26_00451 0.48 -0.2
485,292 + MPMX26_00451 0.51 +0.7
485,292 + MPMX26_00451 0.51 -0.8
485,292 + MPMX26_00451 0.51 +0.3
485,299 + MPMX26_00451 0.52 -0.6
485,299 + MPMX26_00451 0.52 +0.4
485,346 + MPMX26_00451 0.57 -1.4
485,346 + MPMX26_00451 0.57 -0.6
485,422 + MPMX26_00451 0.65 +0.5
485,424 + MPMX26_00451 0.66 +0.5
485,447 + MPMX26_00451 0.68 +0.3
485,461 + MPMX26_00451 0.70 +0.2
485,461 + MPMX26_00451 0.70 -0.6
485,461 + MPMX26_00451 0.70 -0.2
485,528 + MPMX26_00451 0.77 -0.5
485,547 + MPMX26_00451 0.79 +0.1
485,547 + MPMX26_00451 0.79 +0.1
485,547 + MPMX26_00451 0.79 +0.1
485,547 + MPMX26_00451 0.79 -0.4
485,547 + MPMX26_00451 0.79 +0.3
485,547 + MPMX26_00451 0.79 -0.2
485,547 + MPMX26_00451 0.79 -0.8
485,553 + MPMX26_00451 0.80 +0.9
485,590 + MPMX26_00451 0.84 -0.1
485,596 + MPMX26_00451 0.85 -0.1
485,601 + MPMX26_00451 0.85 -0.1
485,614 + MPMX26_00451 0.87 +0.7
485,616 + MPMX26_00451 0.87 -0.7
485,618 + MPMX26_00451 0.87 -0.0
485,626 + MPMX26_00451 0.88 +0.5
485,628 + MPMX26_00451 0.88 +0.1
485,671 + -0.1
485,671 + -0.1
485,675 + +0.4
485,689 + -0.3
485,694 + -0.1
485,694 + -0.1
485,694 + +0.3
485,706 + +0.5
485,706 + +0.8
485,746 + -0.5
485,770 + -0.0
485,771 + +0.6
485,782 + -0.3
485,791 + -1.0
485,831 + MPMX26_00452 0.12 +1.3
485,857 + MPMX26_00452 0.14 +0.3
485,857 + MPMX26_00452 0.14 +0.3
485,884 + MPMX26_00452 0.18 -0.1
485,884 + MPMX26_00452 0.18 -2.2
485,902 + MPMX26_00452 0.20 +0.0
485,908 + MPMX26_00452 0.20 -0.4
485,921 + MPMX26_00452 0.22 -0.0
485,954 + MPMX26_00452 0.25 -0.1
485,954 + MPMX26_00452 0.25 +0.5
485,974 + MPMX26_00452 0.28 +0.4
485,974 + MPMX26_00452 0.28 -0.4
485,974 + MPMX26_00452 0.28 +0.1
485,993 + MPMX26_00452 0.30 +0.8
485,993 + MPMX26_00452 0.30 +0.4
486,016 + MPMX26_00452 0.32 +0.2
486,016 + MPMX26_00452 0.32 -0.1
486,024 + MPMX26_00452 0.33 -0.5
486,108 + MPMX26_00452 0.43 +0.6
486,113 + MPMX26_00452 0.43 -0.2
486,125 + MPMX26_00452 0.45 -0.5
486,125 + MPMX26_00452 0.45 +2.4
486,133 + MPMX26_00452 0.45 +0.1
486,133 + MPMX26_00452 0.45 +0.2
486,144 + MPMX26_00452 0.47 -0.2
486,144 + MPMX26_00452 0.47 -0.2
486,144 + MPMX26_00452 0.47 +0.2
486,144 + MPMX26_00452 0.47 -0.0
486,175 + MPMX26_00452 0.50 -0.1
486,199 + MPMX26_00452 0.53 +0.3
486,253 + MPMX26_00452 0.59 +0.4
486,253 + MPMX26_00452 0.59 -0.7
486,253 + MPMX26_00452 0.59 +0.3
486,254 + MPMX26_00452 0.59 +0.3
486,277 + MPMX26_00452 0.62 -0.5
486,277 + MPMX26_00452 0.62 -0.5
486,336 + MPMX26_00452 0.68 -0.1
486,385 + MPMX26_00452 0.74 -0.6
486,416 + MPMX26_00452 0.77 -0.3
486,455 + MPMX26_00452 0.82 +0.5
486,545 + +0.1
486,575 + +0.1
486,693 + MPMX26_00453 0.15 +0.2
486,693 + MPMX26_00453 0.15 +0.3
486,708 + MPMX26_00453 0.18 +1.1
486,788 + MPMX26_00453 0.33 -0.3
486,838 + MPMX26_00453 0.42 +0.1
486,843 + MPMX26_00453 0.43 -0.1
486,843 + MPMX26_00453 0.43 -0.6
486,848 + MPMX26_00453 0.43 -0.3
486,848 + MPMX26_00453 0.43 -0.2
486,848 + MPMX26_00453 0.43 -0.7
486,892 + MPMX26_00453 0.51 +1.2
486,908 + MPMX26_00453 0.54 +0.4
486,913 + MPMX26_00453 0.55 -0.1
486,918 + MPMX26_00453 0.56 +1.4
486,918 + MPMX26_00453 0.56 +0.1
486,918 + MPMX26_00453 0.56 -0.3
486,918 + MPMX26_00453 0.56 +0.0
486,918 + MPMX26_00453 0.56 -0.2
486,918 + MPMX26_00453 0.56 +0.3
486,918 + MPMX26_00453 0.56 -0.5
486,918 + MPMX26_00453 0.56 -0.1
486,918 + MPMX26_00453 0.56 -0.1
486,918 + MPMX26_00453 0.56 -0.3
486,918 + MPMX26_00453 0.56 +0.1
486,920 + MPMX26_00453 0.57 -0.3
486,920 + MPMX26_00453 0.57 -0.1
486,920 + MPMX26_00453 0.57 -0.2
486,920 + MPMX26_00453 0.57 -1.2
486,966 + MPMX26_00453 0.65 -0.2
486,966 + MPMX26_00453 0.65 -0.3
486,987 + MPMX26_00453 0.69 +0.6
486,989 + MPMX26_00453 0.69 +0.1
486,989 + MPMX26_00453 0.69 -0.1
487,020 + MPMX26_00453 0.75 +0.7
487,068 + MPMX26_00453 0.83 -1.0
487,068 + MPMX26_00453 0.83 -1.0
487,068 + MPMX26_00453 0.83 -0.2
487,068 + MPMX26_00453 0.83 -0.1
487,068 + MPMX26_00453 0.83 -0.5
487,102 + MPMX26_00453 0.89 -0.5
487,104 + -0.7
487,112 + -0.0
487,112 + +1.3
487,112 + -0.4
487,112 + -0.0
487,112 + +0.5
487,112 + +0.3
487,114 + +0.2
487,114 + -0.7
487,298 - MPMX26_00454 0.11 -0.7
487,308 - MPMX26_00454 0.12 +0.2
487,316 - MPMX26_00454 0.13 -0.2
487,459 - MPMX26_00454 0.27 +0.2
487,534 - MPMX26_00454 0.34 -0.4
487,536 - MPMX26_00454 0.34 +0.4
487,547 - MPMX26_00454 0.35 -0.0
487,591 - MPMX26_00454 0.40 -0.1

Or see this region's nucleotide sequence