Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_00415

Experiment: TSB with Dermcidin 1 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_00414 and MPMX26_00415 are separated by 54 nucleotidesMPMX26_00415 and MPMX26_00416 are separated by 278 nucleotidesMPMX26_00416 and MPMX26_00417 are separated by 128 nucleotides MPMX26_00414: MPMX26_00414 - Phosphate acetyltransferase, at 442,990 to 445,134 _00414 MPMX26_00415: MPMX26_00415 - Acetate kinase, at 445,189 to 446,403 _00415 MPMX26_00416: MPMX26_00416 - hypothetical protein, at 446,682 to 447,095 _00416 MPMX26_00417: MPMX26_00417 - Gamma-glutamyl phosphate reductase, at 447,224 to 448,489 _00417 Position (kb) 445 446 447Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 444.208 kb on - strand, within MPMX26_00414at 444.226 kb on - strand, within MPMX26_00414at 444.231 kb on - strand, within MPMX26_00414at 444.231 kb on - strand, within MPMX26_00414at 444.286 kb on - strand, within MPMX26_00414at 444.375 kb on - strand, within MPMX26_00414at 444.387 kb on - strand, within MPMX26_00414at 444.421 kb on - strand, within MPMX26_00414at 444.421 kb on - strand, within MPMX26_00414at 444.541 kb on - strand, within MPMX26_00414at 444.549 kb on - strand, within MPMX26_00414at 444.565 kb on - strand, within MPMX26_00414at 444.565 kb on - strand, within MPMX26_00414at 444.565 kb on - strand, within MPMX26_00414at 444.616 kb on - strand, within MPMX26_00414at 444.622 kb on - strand, within MPMX26_00414at 444.622 kb on - strand, within MPMX26_00414at 444.636 kb on - strand, within MPMX26_00414at 444.670 kb on - strand, within MPMX26_00414at 444.736 kb on - strand, within MPMX26_00414at 444.756 kb on - strand, within MPMX26_00414at 444.793 kb on - strand, within MPMX26_00414at 444.793 kb on - strand, within MPMX26_00414at 444.925 kb on + strandat 445.052 kb on - strandat 445.057 kb on - strandat 445.062 kb on - strandat 445.090 kb on - strandat 445.107 kb on - strandat 445.117 kb on - strandat 445.317 kb on - strand, within MPMX26_00415at 445.317 kb on - strand, within MPMX26_00415at 445.393 kb on - strand, within MPMX26_00415at 445.395 kb on - strand, within MPMX26_00415at 445.402 kb on - strand, within MPMX26_00415at 445.425 kb on - strand, within MPMX26_00415at 445.425 kb on - strand, within MPMX26_00415at 445.456 kb on - strand, within MPMX26_00415at 445.456 kb on - strand, within MPMX26_00415at 445.456 kb on - strand, within MPMX26_00415at 445.456 kb on - strand, within MPMX26_00415at 445.479 kb on - strand, within MPMX26_00415at 445.491 kb on - strand, within MPMX26_00415at 445.494 kb on - strand, within MPMX26_00415at 445.555 kb on - strand, within MPMX26_00415at 445.555 kb on - strand, within MPMX26_00415at 445.555 kb on - strand, within MPMX26_00415at 445.555 kb on - strand, within MPMX26_00415at 445.555 kb on - strand, within MPMX26_00415at 445.555 kb on - strand, within MPMX26_00415at 445.555 kb on - strand, within MPMX26_00415at 445.565 kb on - strand, within MPMX26_00415at 445.609 kb on - strand, within MPMX26_00415at 445.612 kb on - strand, within MPMX26_00415at 445.681 kb on - strand, within MPMX26_00415at 445.682 kb on - strand, within MPMX26_00415at 445.728 kb on - strand, within MPMX26_00415at 445.730 kb on - strand, within MPMX26_00415at 445.738 kb on - strand, within MPMX26_00415at 445.738 kb on - strand, within MPMX26_00415at 445.749 kb on - strand, within MPMX26_00415at 445.773 kb on - strand, within MPMX26_00415at 445.773 kb on - strand, within MPMX26_00415at 445.773 kb on - strand, within MPMX26_00415at 445.773 kb on - strand, within MPMX26_00415at 445.796 kb on - strand, within MPMX26_00415at 445.822 kb on - strand, within MPMX26_00415at 445.833 kb on - strand, within MPMX26_00415at 445.840 kb on - strand, within MPMX26_00415at 445.840 kb on - strand, within MPMX26_00415at 445.840 kb on - strand, within MPMX26_00415at 445.941 kb on - strand, within MPMX26_00415at 445.951 kb on - strand, within MPMX26_00415at 446.047 kb on - strand, within MPMX26_00415at 446.082 kb on - strand, within MPMX26_00415at 446.121 kb on - strand, within MPMX26_00415at 446.128 kb on - strand, within MPMX26_00415at 446.134 kb on - strand, within MPMX26_00415at 446.134 kb on - strand, within MPMX26_00415at 446.134 kb on - strand, within MPMX26_00415at 446.211 kb on - strand, within MPMX26_00415at 446.236 kb on - strand, within MPMX26_00415at 446.236 kb on - strand, within MPMX26_00415at 446.236 kb on - strand, within MPMX26_00415at 446.236 kb on - strand, within MPMX26_00415at 446.281 kb on - strand, within MPMX26_00415at 446.281 kb on - strand, within MPMX26_00415at 446.281 kb on - strand, within MPMX26_00415at 446.281 kb on - strand, within MPMX26_00415at 446.281 kb on - strand, within MPMX26_00415at 446.281 kb on - strand, within MPMX26_00415at 446.281 kb on - strand, within MPMX26_00415at 446.292 kb on - strandat 446.323 kb on - strandat 446.391 kb on - strandat 446.539 kb on - strandat 446.539 kb on - strandat 446.724 kb on + strand, within MPMX26_00416at 446.732 kb on - strand, within MPMX26_00416at 446.732 kb on - strand, within MPMX26_00416at 447.208 kb on - strandat 447.253 kb on - strandat 447.277 kb on - strandat 447.277 kb on - strandat 447.285 kb on - strandat 447.285 kb on - strandat 447.285 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB with Dermcidin 1 ug/mL
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444,208 - MPMX26_00414 0.57 -0.4
444,226 - MPMX26_00414 0.58 +1.2
444,231 - MPMX26_00414 0.58 -1.2
444,231 - MPMX26_00414 0.58 -0.7
444,286 - MPMX26_00414 0.60 +0.8
444,375 - MPMX26_00414 0.65 +0.6
444,387 - MPMX26_00414 0.65 -1.4
444,421 - MPMX26_00414 0.67 +1.9
444,421 - MPMX26_00414 0.67 +0.4
444,541 - MPMX26_00414 0.72 +1.4
444,549 - MPMX26_00414 0.73 +0.1
444,565 - MPMX26_00414 0.73 +1.1
444,565 - MPMX26_00414 0.73 +1.1
444,565 - MPMX26_00414 0.73 +0.8
444,616 - MPMX26_00414 0.76 +0.5
444,622 - MPMX26_00414 0.76 +2.6
444,622 - MPMX26_00414 0.76 +0.9
444,636 - MPMX26_00414 0.77 -1.1
444,670 - MPMX26_00414 0.78 +0.8
444,736 - MPMX26_00414 0.81 +1.9
444,756 - MPMX26_00414 0.82 -0.6
444,793 - MPMX26_00414 0.84 +0.4
444,793 - MPMX26_00414 0.84 +1.3
444,925 + +0.0
445,052 - +1.3
445,057 - +0.7
445,062 - -0.9
445,090 - +1.9
445,107 - -1.1
445,117 - +1.1
445,317 - MPMX26_00415 0.11 +0.7
445,317 - MPMX26_00415 0.11 +2.6
445,393 - MPMX26_00415 0.17 +0.3
445,395 - MPMX26_00415 0.17 +0.3
445,402 - MPMX26_00415 0.18 +0.0
445,425 - MPMX26_00415 0.19 +1.0
445,425 - MPMX26_00415 0.19 -0.4
445,456 - MPMX26_00415 0.22 +1.5
445,456 - MPMX26_00415 0.22 -0.6
445,456 - MPMX26_00415 0.22 +0.1
445,456 - MPMX26_00415 0.22 -0.7
445,479 - MPMX26_00415 0.24 -0.2
445,491 - MPMX26_00415 0.25 +0.4
445,494 - MPMX26_00415 0.25 -0.2
445,555 - MPMX26_00415 0.30 +0.0
445,555 - MPMX26_00415 0.30 +0.9
445,555 - MPMX26_00415 0.30 -0.3
445,555 - MPMX26_00415 0.30 +0.4
445,555 - MPMX26_00415 0.30 +0.5
445,555 - MPMX26_00415 0.30 +1.4
445,555 - MPMX26_00415 0.30 +0.5
445,565 - MPMX26_00415 0.31 +0.0
445,609 - MPMX26_00415 0.35 +0.6
445,612 - MPMX26_00415 0.35 +0.4
445,681 - MPMX26_00415 0.40 +0.3
445,682 - MPMX26_00415 0.41 +0.6
445,728 - MPMX26_00415 0.44 +0.5
445,730 - MPMX26_00415 0.45 +2.0
445,738 - MPMX26_00415 0.45 -1.4
445,738 - MPMX26_00415 0.45 +1.3
445,749 - MPMX26_00415 0.46 -0.0
445,773 - MPMX26_00415 0.48 +0.0
445,773 - MPMX26_00415 0.48 -0.7
445,773 - MPMX26_00415 0.48 +0.1
445,773 - MPMX26_00415 0.48 +0.3
445,796 - MPMX26_00415 0.50 +1.2
445,822 - MPMX26_00415 0.52 +1.0
445,833 - MPMX26_00415 0.53 -0.2
445,840 - MPMX26_00415 0.54 -0.4
445,840 - MPMX26_00415 0.54 -2.5
445,840 - MPMX26_00415 0.54 +2.1
445,941 - MPMX26_00415 0.62 +0.2
445,951 - MPMX26_00415 0.63 +0.5
446,047 - MPMX26_00415 0.71 +1.0
446,082 - MPMX26_00415 0.73 +0.6
446,121 - MPMX26_00415 0.77 +1.6
446,128 - MPMX26_00415 0.77 -0.7
446,134 - MPMX26_00415 0.78 +1.3
446,134 - MPMX26_00415 0.78 +0.0
446,134 - MPMX26_00415 0.78 -2.2
446,211 - MPMX26_00415 0.84 +1.9
446,236 - MPMX26_00415 0.86 +0.9
446,236 - MPMX26_00415 0.86 +0.9
446,236 - MPMX26_00415 0.86 +0.6
446,236 - MPMX26_00415 0.86 -0.5
446,281 - MPMX26_00415 0.90 +0.5
446,281 - MPMX26_00415 0.90 +0.9
446,281 - MPMX26_00415 0.90 +1.0
446,281 - MPMX26_00415 0.90 -1.8
446,281 - MPMX26_00415 0.90 +0.1
446,281 - MPMX26_00415 0.90 +1.1
446,281 - MPMX26_00415 0.90 -0.3
446,292 - +1.9
446,323 - -0.3
446,391 - -0.6
446,539 - +1.0
446,539 - +0.9
446,724 + MPMX26_00416 0.10 -0.9
446,732 - MPMX26_00416 0.12 -0.2
446,732 - MPMX26_00416 0.12 +0.6
447,208 - -0.1
447,253 - -1.1
447,277 - -1.4
447,277 - -3.4
447,285 - -1.4
447,285 - -2.0
447,285 - -2.3

Or see this region's nucleotide sequence