Strain Fitness in Escherichia coli ECRC98 around JDDGAC_05250

Experiment: WM_Bas31

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntespM1 and nleG are separated by 183 nucleotidesnleG and JDDGAC_05255 are separated by 754 nucleotides JDDGAC_05245: espM1 - T3SS effector guanine nucleotide exchange factor EspM1, at 925,641 to 926,231 espM1 JDDGAC_05250: nleG - T3SS effector E3 ubiquitin-protein ligase NleG, at 926,415 to 927,062 nleG JDDGAC_05255: JDDGAC_05255 - hypothetical protein, at 927,817 to 928,086 _05255 Position (kb) 926 927 928Strain fitness (log2 ratio) -2 -1 0 1 2 3at 925.515 kb on - strandat 925.552 kb on + strandat 925.553 kb on - strandat 925.557 kb on - strandat 925.557 kb on - strandat 925.557 kb on - strandat 925.559 kb on - strandat 925.559 kb on - strandat 925.687 kb on - strandat 925.698 kb on - strandat 925.903 kb on - strand, within espM1at 926.002 kb on - strand, within espM1at 926.232 kb on - strandat 926.271 kb on - strandat 926.345 kb on - strandat 926.355 kb on + strandat 926.395 kb on - strandat 926.694 kb on - strand, within nleGat 927.412 kb on + strandat 927.432 kb on + strandat 927.677 kb on + strandat 927.728 kb on - strandat 927.894 kb on + strand, within JDDGAC_05255at 928.033 kb on + strand, within JDDGAC_05255

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_Bas31
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925,515 - +0.3
925,552 + +2.0
925,553 - -0.4
925,557 - +0.4
925,557 - -1.7
925,557 - +0.3
925,559 - +0.2
925,559 - -1.7
925,687 - +0.0
925,698 - +1.4
925,903 - espM1 JDDGAC_05245 0.44 -0.2
926,002 - espM1 JDDGAC_05245 0.61 +0.4
926,232 - +0.4
926,271 - -2.4
926,345 - +0.1
926,355 + -0.6
926,395 - +1.3
926,694 - nleG JDDGAC_05250 0.43 -1.2
927,412 + -0.1
927,432 + +2.8
927,677 + -0.0
927,728 - -0.9
927,894 + JDDGAC_05255 0.29 -1.2
928,033 + JDDGAC_05255 0.80 +0.5

Or see this region's nucleotide sequence