Experiment: WM_Bas31
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dgcZ and mgtS are separated by 218 nucleotides mgtS and ftrA are separated by 107 nucleotides ftrA and pspE are separated by 94 nucleotides pspE and ydeE are separated by 40 nucleotides
JDDGAC_03545: dgcZ - diguanylate cyclase DgcZ, at 590,780 to 591,670
dgcZ
JDDGAC_03555: mgtS - protein MgtS, at 591,889 to 591,984
mgtS
JDDGAC_03560: ftrA - transcriptional regulator FtrA, at 592,092 to 593,063
ftrA
JDDGAC_03565: pspE - rhodanese, at 593,158 to 593,553
pspE
JDDGAC_03570: ydeE - efflux MFS transporter YdeE, at 593,594 to 594,781
ydeE
Position (kb) 592
593
594 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 591.330 kb on + strand, within dgcZ at 591.599 kb on + strand at 591.599 kb on + strand at 591.600 kb on - strand at 591.770 kb on + strand at 591.841 kb on - strand at 591.841 kb on - strand at 592.052 kb on + strand at 592.255 kb on - strand, within ftrA at 592.338 kb on + strand, within ftrA at 592.509 kb on - strand, within ftrA at 592.610 kb on - strand, within ftrA at 592.611 kb on + strand, within ftrA at 592.611 kb on + strand, within ftrA at 592.667 kb on - strand, within ftrA at 592.906 kb on - strand, within ftrA at 593.013 kb on + strand at 593.053 kb on - strand at 593.123 kb on - strand at 593.165 kb on - strand at 593.419 kb on + strand, within pspE at 593.551 kb on + strand at 593.632 kb on + strand at 593.640 kb on - strand at 593.714 kb on + strand, within ydeE at 593.715 kb on - strand, within ydeE at 593.821 kb on + strand, within ydeE at 593.821 kb on + strand, within ydeE at 593.822 kb on - strand, within ydeE at 593.822 kb on - strand, within ydeE at 593.822 kb on - strand, within ydeE at 593.822 kb on - strand, within ydeE at 593.886 kb on - strand, within ydeE at 593.998 kb on - strand, within ydeE
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas31 remove 591,330 + dgcZ JDDGAC_03545 0.62 +0.0 591,599 + -0.4 591,599 + +0.3 591,600 - +2.5 591,770 + -0.2 591,841 - -0.6 591,841 - -0.3 592,052 + +0.5 592,255 - ftrA JDDGAC_03560 0.17 -2.3 592,338 + ftrA JDDGAC_03560 0.25 -0.6 592,509 - ftrA JDDGAC_03560 0.43 -0.8 592,610 - ftrA JDDGAC_03560 0.53 -1.6 592,611 + ftrA JDDGAC_03560 0.53 +0.2 592,611 + ftrA JDDGAC_03560 0.53 -0.2 592,667 - ftrA JDDGAC_03560 0.59 -1.1 592,906 - ftrA JDDGAC_03560 0.84 -0.6 593,013 + +0.8 593,053 - +0.1 593,123 - +1.4 593,165 - +0.1 593,419 + pspE JDDGAC_03565 0.66 +0.0 593,551 + -0.5 593,632 + -0.5 593,640 - +0.9 593,714 + ydeE JDDGAC_03570 0.10 -1.8 593,715 - ydeE JDDGAC_03570 0.10 +0.9 593,821 + ydeE JDDGAC_03570 0.19 -2.7 593,821 + ydeE JDDGAC_03570 0.19 +0.6 593,822 - ydeE JDDGAC_03570 0.19 +1.9 593,822 - ydeE JDDGAC_03570 0.19 +0.5 593,822 - ydeE JDDGAC_03570 0.19 +3.0 593,822 - ydeE JDDGAC_03570 0.19 -0.2 593,886 - ydeE JDDGAC_03570 0.25 +1.3 593,998 - ydeE JDDGAC_03570 0.34 +1.3
Or see this region's nucleotide sequence