Strain Fitness in Escherichia coli ECRC98 around JDDGAC_02080

Experiment: WM_Bas31

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntanmK and mliC are separated by 103 nucleotidesmliC and pdxH are separated by 58 nucleotidespdxH and tyrS are separated by 128 nucleotides JDDGAC_02075: anmK - anhydro-N-acetylmuramic acid kinase, at 371,224 to 372,333 anmK JDDGAC_02080: mliC - C-type lysozyme inhibitor, at 372,437 to 372,760 mliC JDDGAC_02085: pdxH - pyridoxamine 5'-phosphate oxidase, at 372,819 to 373,475 pdxH JDDGAC_02090: tyrS - tyrosine--tRNA ligase, at 373,604 to 374,878 tyrS Position (kb) 372 373Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 371.493 kb on + strand, within anmKat 371.493 kb on + strand, within anmKat 371.494 kb on - strand, within anmKat 371.604 kb on + strand, within anmKat 371.605 kb on - strand, within anmKat 371.666 kb on + strand, within anmKat 371.780 kb on - strand, within anmKat 371.796 kb on + strand, within anmKat 371.843 kb on - strand, within anmKat 371.961 kb on + strand, within anmKat 371.966 kb on - strand, within anmKat 372.101 kb on + strand, within anmKat 372.101 kb on + strand, within anmKat 372.102 kb on - strand, within anmKat 372.114 kb on + strand, within anmKat 372.120 kb on + strand, within anmKat 372.389 kb on - strandat 372.397 kb on + strandat 372.397 kb on + strandat 372.484 kb on + strand, within mliCat 372.604 kb on + strand, within mliCat 372.613 kb on - strand, within mliCat 372.704 kb on + strand, within mliCat 372.704 kb on + strand, within mliCat 372.705 kb on - strand, within mliCat 372.731 kb on - strandat 373.589 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_Bas31
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371,493 + anmK JDDGAC_02075 0.24 -0.0
371,493 + anmK JDDGAC_02075 0.24 +0.9
371,494 - anmK JDDGAC_02075 0.24 +3.1
371,604 + anmK JDDGAC_02075 0.34 -0.4
371,605 - anmK JDDGAC_02075 0.34 +2.2
371,666 + anmK JDDGAC_02075 0.40 +0.9
371,780 - anmK JDDGAC_02075 0.50 -0.8
371,796 + anmK JDDGAC_02075 0.52 +0.4
371,843 - anmK JDDGAC_02075 0.56 +0.9
371,961 + anmK JDDGAC_02075 0.66 -3.1
371,966 - anmK JDDGAC_02075 0.67 +0.7
372,101 + anmK JDDGAC_02075 0.79 -0.4
372,101 + anmK JDDGAC_02075 0.79 -2.0
372,102 - anmK JDDGAC_02075 0.79 -0.3
372,114 + anmK JDDGAC_02075 0.80 -0.1
372,120 + anmK JDDGAC_02075 0.81 +1.1
372,389 - -0.5
372,397 + +0.7
372,397 + -0.3
372,484 + mliC JDDGAC_02080 0.15 -0.5
372,604 + mliC JDDGAC_02080 0.52 -2.3
372,613 - mliC JDDGAC_02080 0.54 -0.7
372,704 + mliC JDDGAC_02080 0.82 -0.5
372,704 + mliC JDDGAC_02080 0.82 -1.3
372,705 - mliC JDDGAC_02080 0.83 -1.0
372,731 - -0.1
373,589 + -0.1

Or see this region's nucleotide sequence