Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A_HEPES media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS03715 and ABIE51_RS03720 are separated by 113 nucleotides ABIE51_RS03720 and ABIE51_RS03725 are separated by 1 nucleotides ABIE51_RS03725 and ABIE51_RS03730 are separated by 72 nucleotides ABIE51_RS03730 and ABIE51_RS03735 are separated by 127 nucleotides
ABIE51_RS03715: ABIE51_RS03715 - aldose epimerase, at 824,698 to 825,510
_RS03715
ABIE51_RS03720: ABIE51_RS03720 - flagellar motor stator protein MotA, at 825,624 to 826,478
_RS03720
ABIE51_RS03725: ABIE51_RS03725 - flagellar motor protein MotB, at 826,480 to 827,457
_RS03725
ABIE51_RS03730: ABIE51_RS03730 - hypothetical protein, at 827,530 to 828,018
_RS03730
ABIE51_RS03735: ABIE51_RS03735 - dodecin, at 828,146 to 828,355
_RS03735
Position (kb) 826
827
828 Strain fitness (log2 ratio) -2
-1
0
1 at 825.717 kb on + strand, within ABIE51_RS03720 at 825.717 kb on + strand, within ABIE51_RS03720 at 825.718 kb on - strand, within ABIE51_RS03720 at 825.718 kb on - strand, within ABIE51_RS03720 at 825.831 kb on + strand, within ABIE51_RS03720 at 825.831 kb on + strand, within ABIE51_RS03720 at 825.831 kb on + strand, within ABIE51_RS03720 at 825.832 kb on - strand, within ABIE51_RS03720 at 825.832 kb on - strand, within ABIE51_RS03720 at 825.847 kb on - strand, within ABIE51_RS03720 at 825.847 kb on - strand, within ABIE51_RS03720 at 826.253 kb on - strand, within ABIE51_RS03720 at 826.273 kb on - strand, within ABIE51_RS03720 at 826.377 kb on + strand, within ABIE51_RS03720 at 826.571 kb on - strand at 826.580 kb on + strand, within ABIE51_RS03725 at 826.664 kb on - strand, within ABIE51_RS03725 at 826.664 kb on - strand, within ABIE51_RS03725 at 827.041 kb on + strand, within ABIE51_RS03725 at 827.042 kb on - strand, within ABIE51_RS03725 at 827.106 kb on + strand, within ABIE51_RS03725 at 827.131 kb on + strand, within ABIE51_RS03725 at 827.132 kb on - strand, within ABIE51_RS03725 at 827.539 kb on + strand at 827.539 kb on + strand at 827.539 kb on + strand at 827.540 kb on - strand at 827.692 kb on + strand, within ABIE51_RS03730 at 828.017 kb on - strand at 828.070 kb on + strand at 828.070 kb on + strand at 828.070 kb on + strand at 828.070 kb on + strand at 828.070 kb on + strand at 828.070 kb on + strand at 828.071 kb on - strand at 828.071 kb on - strand at 828.071 kb on - strand at 828.071 kb on - strand at 828.071 kb on - strand at 828.071 kb on - strand at 828.071 kb on - strand at 828.071 kb on - strand at 828.114 kb on - strand at 828.161 kb on + strand at 828.162 kb on - strand at 828.162 kb on - strand at 828.429 kb on - strand at 828.429 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A_HEPES media remove 825,717 + ABIE51_RS03720 0.11 -0.3 825,717 + ABIE51_RS03720 0.11 +0.1 825,718 - ABIE51_RS03720 0.11 -0.3 825,718 - ABIE51_RS03720 0.11 -0.5 825,831 + ABIE51_RS03720 0.24 +0.2 825,831 + ABIE51_RS03720 0.24 -0.2 825,831 + ABIE51_RS03720 0.24 +0.6 825,832 - ABIE51_RS03720 0.24 +0.7 825,832 - ABIE51_RS03720 0.24 -0.6 825,847 - ABIE51_RS03720 0.26 -0.6 825,847 - ABIE51_RS03720 0.26 +0.5 826,253 - ABIE51_RS03720 0.74 -0.4 826,273 - ABIE51_RS03720 0.76 +0.9 826,377 + ABIE51_RS03720 0.88 -0.2 826,571 - -0.2 826,580 + ABIE51_RS03725 0.10 -1.1 826,664 - ABIE51_RS03725 0.19 +0.5 826,664 - ABIE51_RS03725 0.19 +0.3 827,041 + ABIE51_RS03725 0.57 +1.1 827,042 - ABIE51_RS03725 0.57 +0.4 827,106 + ABIE51_RS03725 0.64 -0.2 827,131 + ABIE51_RS03725 0.67 -0.4 827,132 - ABIE51_RS03725 0.67 +0.4 827,539 + +0.0 827,539 + -0.0 827,539 + -0.0 827,540 - +0.5 827,692 + ABIE51_RS03730 0.33 +0.2 828,017 - -0.2 828,070 + -0.5 828,070 + -0.6 828,070 + +0.1 828,070 + -0.4 828,070 + +0.6 828,070 + +0.0 828,071 - -0.2 828,071 - -0.5 828,071 - +0.8 828,071 - -0.2 828,071 - -0.1 828,071 - -0.0 828,071 - +0.2 828,071 - +1.0 828,114 - +1.1 828,161 + -0.2 828,162 - -2.4 828,162 - +0.2 828,429 - +0.9 828,429 - +0.1
Or see this region's nucleotide sequence