Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A_HEPES media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS01640 and ABIE51_RS01645 are separated by 113 nucleotides ABIE51_RS01645 and ABIE51_RS01650 are separated by 229 nucleotides
ABIE51_RS01640: ABIE51_RS01640 - indolepyruvate ferredoxin oxidoreductase family protein, at 360,159 to 363,845
_RS01640
ABIE51_RS01645: ABIE51_RS01645 - MmcQ/YjbR family DNA-binding protein, at 363,959 to 364,318
_RS01645
ABIE51_RS01650: ABIE51_RS01650 - MFS transporter, at 364,548 to 366,215
_RS01650
Position (kb) 363
364
365 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 363.255 kb on + strand, within ABIE51_RS01640 at 363.255 kb on + strand, within ABIE51_RS01640 at 363.255 kb on + strand, within ABIE51_RS01640 at 363.256 kb on - strand, within ABIE51_RS01640 at 363.267 kb on + strand, within ABIE51_RS01640 at 363.369 kb on + strand, within ABIE51_RS01640 at 363.369 kb on + strand, within ABIE51_RS01640 at 363.370 kb on - strand, within ABIE51_RS01640 at 363.381 kb on + strand, within ABIE51_RS01640 at 363.399 kb on + strand, within ABIE51_RS01640 at 363.450 kb on + strand, within ABIE51_RS01640 at 363.451 kb on - strand, within ABIE51_RS01640 at 363.451 kb on - strand, within ABIE51_RS01640 at 363.648 kb on + strand at 363.649 kb on - strand at 363.649 kb on - strand at 363.744 kb on + strand at 363.745 kb on - strand at 363.856 kb on + strand at 363.984 kb on - strand at 364.232 kb on + strand, within ABIE51_RS01645 at 364.233 kb on - strand, within ABIE51_RS01645 at 364.396 kb on - strand at 364.555 kb on + strand at 364.555 kb on + strand at 364.648 kb on + strand at 364.648 kb on + strand at 364.649 kb on - strand at 364.651 kb on + strand at 364.651 kb on + strand at 364.651 kb on + strand at 364.652 kb on - strand at 364.652 kb on - strand at 364.652 kb on - strand at 364.652 kb on - strand at 364.729 kb on + strand, within ABIE51_RS01650 at 364.802 kb on - strand, within ABIE51_RS01650 at 364.802 kb on - strand, within ABIE51_RS01650 at 364.817 kb on - strand, within ABIE51_RS01650 at 365.236 kb on + strand, within ABIE51_RS01650 at 365.237 kb on - strand, within ABIE51_RS01650
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A_HEPES media remove 363,255 + ABIE51_RS01640 0.84 +0.1 363,255 + ABIE51_RS01640 0.84 -0.4 363,255 + ABIE51_RS01640 0.84 -0.4 363,256 - ABIE51_RS01640 0.84 -0.2 363,267 + ABIE51_RS01640 0.84 +0.2 363,369 + ABIE51_RS01640 0.87 -0.4 363,369 + ABIE51_RS01640 0.87 -0.6 363,370 - ABIE51_RS01640 0.87 -0.1 363,381 + ABIE51_RS01640 0.87 -0.8 363,399 + ABIE51_RS01640 0.88 -0.1 363,450 + ABIE51_RS01640 0.89 +0.8 363,451 - ABIE51_RS01640 0.89 -0.3 363,451 - ABIE51_RS01640 0.89 -0.6 363,648 + +0.1 363,649 - +0.2 363,649 - -1.2 363,744 + +0.6 363,745 - +0.2 363,856 + +0.4 363,984 - -0.3 364,232 + ABIE51_RS01645 0.76 +0.5 364,233 - ABIE51_RS01645 0.76 +0.2 364,396 - +0.2 364,555 + -0.2 364,555 + +0.1 364,648 + -0.0 364,648 + -0.1 364,649 - +3.2 364,651 + +0.2 364,651 + -0.2 364,651 + +0.1 364,652 - -2.0 364,652 - -0.4 364,652 - +0.0 364,652 - +0.0 364,729 + ABIE51_RS01650 0.11 +1.7 364,802 - ABIE51_RS01650 0.15 +0.2 364,802 - ABIE51_RS01650 0.15 +0.7 364,817 - ABIE51_RS01650 0.16 -0.1 365,236 + ABIE51_RS01650 0.41 -0.2 365,237 - ABIE51_RS01650 0.41 -0.1
Or see this region's nucleotide sequence