Experiment: Planktonic; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS03685 and LRK53_RS03690 are separated by 832 nucleotides LRK53_RS03690 and LRK53_RS03695 are separated by 249 nucleotides
LRK53_RS03685: LRK53_RS03685 - porphobilinogen synthase, at 867,940 to 868,932
_RS03685
LRK53_RS03690: LRK53_RS03690 - dihydroorotase, at 869,765 to 870,802
_RS03690
LRK53_RS03695: LRK53_RS03695 - glutamate--cysteine ligase, at 871,052 to 872,419
_RS03695
Position (kb) 869
870
871 Strain fitness (log2 ratio) -2
-1
0
1
2 at 868.930 kb on + strand at 868.930 kb on + strand at 868.930 kb on + strand at 868.930 kb on + strand at 868.930 kb on + strand at 868.930 kb on + strand at 868.930 kb on + strand at 868.930 kb on + strand at 868.931 kb on - strand at 868.931 kb on - strand at 868.954 kb on + strand at 868.954 kb on + strand at 868.954 kb on + strand at 868.954 kb on + strand at 868.954 kb on + strand at 868.955 kb on - strand at 868.955 kb on - strand at 868.955 kb on - strand at 868.955 kb on - strand at 869.037 kb on - strand at 869.037 kb on - strand at 869.037 kb on - strand at 869.037 kb on - strand at 869.037 kb on - strand at 869.647 kb on + strand at 869.647 kb on + strand at 869.647 kb on + strand at 869.781 kb on + strand at 869.781 kb on + strand at 869.782 kb on - strand at 869.933 kb on + strand, within LRK53_RS03690 at 869.996 kb on + strand, within LRK53_RS03690 at 869.996 kb on + strand, within LRK53_RS03690 at 869.996 kb on + strand, within LRK53_RS03690 at 869.997 kb on - strand, within LRK53_RS03690 at 870.068 kb on + strand, within LRK53_RS03690 at 870.068 kb on + strand, within LRK53_RS03690 at 870.068 kb on + strand, within LRK53_RS03690 at 870.069 kb on - strand, within LRK53_RS03690 at 870.069 kb on - strand, within LRK53_RS03690 at 870.419 kb on + strand, within LRK53_RS03690 at 870.567 kb on - strand, within LRK53_RS03690 at 870.567 kb on - strand, within LRK53_RS03690 at 870.593 kb on + strand, within LRK53_RS03690 at 870.593 kb on + strand, within LRK53_RS03690 at 870.593 kb on + strand, within LRK53_RS03690 at 870.594 kb on - strand, within LRK53_RS03690 at 870.594 kb on - strand, within LRK53_RS03690 at 870.668 kb on + strand, within LRK53_RS03690 at 870.735 kb on - strand at 870.801 kb on - strand at 870.826 kb on - strand at 870.826 kb on - strand at 870.826 kb on - strand at 870.826 kb on - strand at 870.898 kb on + strand at 870.953 kb on + strand at 870.953 kb on + strand at 870.953 kb on + strand at 870.953 kb on + strand at 870.953 kb on + strand at 870.954 kb on - strand at 870.954 kb on - strand at 870.954 kb on - strand at 870.954 kb on - strand at 870.954 kb on - strand at 870.954 kb on - strand at 870.969 kb on + strand at 870.970 kb on - strand at 870.970 kb on - strand at 871.015 kb on + strand at 871.015 kb on + strand at 871.015 kb on + strand at 871.015 kb on + strand at 871.015 kb on + strand at 871.016 kb on - strand at 871.016 kb on - strand at 871.016 kb on - strand at 871.016 kb on - strand at 871.057 kb on - strand at 871.389 kb on + strand, within LRK53_RS03695 at 871.390 kb on - strand, within LRK53_RS03695 at 871.467 kb on + strand, within LRK53_RS03695 at 871.467 kb on + strand, within LRK53_RS03695 at 871.467 kb on + strand, within LRK53_RS03695 at 871.467 kb on + strand, within LRK53_RS03695 at 871.467 kb on + strand, within LRK53_RS03695 at 871.467 kb on + strand, within LRK53_RS03695 at 871.467 kb on + strand, within LRK53_RS03695 at 871.468 kb on - strand, within LRK53_RS03695 at 871.468 kb on - strand, within LRK53_RS03695 at 871.602 kb on + strand, within LRK53_RS03695 at 871.602 kb on + strand, within LRK53_RS03695 at 871.603 kb on - strand, within LRK53_RS03695 at 871.603 kb on - strand, within LRK53_RS03695 at 871.603 kb on - strand, within LRK53_RS03695 at 871.603 kb on - strand, within LRK53_RS03695 at 871.617 kb on + strand, within LRK53_RS03695 at 871.617 kb on + strand, within LRK53_RS03695 at 871.618 kb on - strand, within LRK53_RS03695 at 871.626 kb on + strand, within LRK53_RS03695 at 871.626 kb on + strand, within LRK53_RS03695 at 871.626 kb on + strand, within LRK53_RS03695 at 871.626 kb on + strand, within LRK53_RS03695 at 871.626 kb on + strand, within LRK53_RS03695 at 871.626 kb on + strand, within LRK53_RS03695 at 871.627 kb on - strand, within LRK53_RS03695 at 871.627 kb on - strand, within LRK53_RS03695 at 871.627 kb on - strand, within LRK53_RS03695 at 871.627 kb on - strand, within LRK53_RS03695 at 871.627 kb on - strand, within LRK53_RS03695 at 871.627 kb on - strand, within LRK53_RS03695 at 871.627 kb on - strand, within LRK53_RS03695 at 871.627 kb on - strand, within LRK53_RS03695 at 871.627 kb on - strand, within LRK53_RS03695 at 871.627 kb on - strand, within LRK53_RS03695 at 871.647 kb on + strand, within LRK53_RS03695 at 871.647 kb on + strand, within LRK53_RS03695 at 871.647 kb on + strand, within LRK53_RS03695 at 871.647 kb on + strand, within LRK53_RS03695 at 871.647 kb on + strand, within LRK53_RS03695 at 871.647 kb on + strand, within LRK53_RS03695 at 871.647 kb on + strand, within LRK53_RS03695 at 871.647 kb on + strand, within LRK53_RS03695 at 871.647 kb on + strand, within LRK53_RS03695 at 871.647 kb on + strand, within LRK53_RS03695 at 871.647 kb on + strand, within LRK53_RS03695 at 871.647 kb on + strand, within LRK53_RS03695 at 871.647 kb on + strand, within LRK53_RS03695 at 871.647 kb on + strand, within LRK53_RS03695 at 871.647 kb on + strand, within LRK53_RS03695 at 871.647 kb on + strand, within LRK53_RS03695 at 871.647 kb on + strand, within LRK53_RS03695 at 871.648 kb on - strand, within LRK53_RS03695 at 871.648 kb on - strand, within LRK53_RS03695 at 871.648 kb on - strand, within LRK53_RS03695 at 871.648 kb on - strand, within LRK53_RS03695 at 871.648 kb on - strand, within LRK53_RS03695 at 871.648 kb on - strand, within LRK53_RS03695 at 871.648 kb on - strand, within LRK53_RS03695 at 871.648 kb on - strand, within LRK53_RS03695 at 871.648 kb on - strand, within LRK53_RS03695 at 871.648 kb on - strand, within LRK53_RS03695 at 871.648 kb on - strand, within LRK53_RS03695 at 871.648 kb on - strand, within LRK53_RS03695 at 871.648 kb on - strand, within LRK53_RS03695 at 871.648 kb on - strand, within LRK53_RS03695 at 871.648 kb on - strand, within LRK53_RS03695 at 871.656 kb on + strand, within LRK53_RS03695 at 871.657 kb on - strand, within LRK53_RS03695 at 871.657 kb on - strand, within LRK53_RS03695 at 871.752 kb on + strand, within LRK53_RS03695 at 871.752 kb on + strand, within LRK53_RS03695 at 871.752 kb on + strand, within LRK53_RS03695 at 871.752 kb on + strand, within LRK53_RS03695 at 871.752 kb on + strand, within LRK53_RS03695 at 871.752 kb on + strand, within LRK53_RS03695 at 871.753 kb on - strand, within LRK53_RS03695 at 871.753 kb on - strand, within LRK53_RS03695 at 871.753 kb on - strand, within LRK53_RS03695 at 871.753 kb on - strand, within LRK53_RS03695 at 871.753 kb on - strand, within LRK53_RS03695
Per-strain Table
Position Strand Gene LocusTag Fraction Planktonic; Day2; SGW; pH7 remove 868,930 + +1.2 868,930 + -2.4 868,930 + +0.6 868,930 + +1.2 868,930 + -2.3 868,930 + -0.2 868,930 + +1.8 868,930 + +0.2 868,931 - -2.6 868,931 - -0.7 868,954 + -1.6 868,954 + -0.9 868,954 + -0.2 868,954 + -1.8 868,954 + -1.7 868,955 - -1.0 868,955 - -0.5 868,955 - -0.9 868,955 - +0.4 869,037 - -0.8 869,037 - -1.9 869,037 - -1.4 869,037 - -0.8 869,037 - -0.3 869,647 + -1.8 869,647 + -0.4 869,647 + -0.3 869,781 + +0.4 869,781 + +0.4 869,782 - +1.4 869,933 + LRK53_RS03690 0.16 +1.0 869,996 + LRK53_RS03690 0.22 -2.2 869,996 + LRK53_RS03690 0.22 -1.9 869,996 + LRK53_RS03690 0.22 -0.8 869,997 - LRK53_RS03690 0.22 -0.4 870,068 + LRK53_RS03690 0.29 -0.8 870,068 + LRK53_RS03690 0.29 +1.7 870,068 + LRK53_RS03690 0.29 +0.4 870,069 - LRK53_RS03690 0.29 -1.1 870,069 - LRK53_RS03690 0.29 -1.2 870,419 + LRK53_RS03690 0.63 -0.9 870,567 - LRK53_RS03690 0.77 -0.6 870,567 - LRK53_RS03690 0.77 +0.1 870,593 + LRK53_RS03690 0.80 +2.0 870,593 + LRK53_RS03690 0.80 +1.4 870,593 + LRK53_RS03690 0.80 -0.8 870,594 - LRK53_RS03690 0.80 +0.8 870,594 - LRK53_RS03690 0.80 -1.3 870,668 + LRK53_RS03690 0.87 +0.2 870,735 - -0.9 870,801 - +2.0 870,826 - -0.5 870,826 - +0.1 870,826 - -0.3 870,826 - -0.1 870,898 + +0.6 870,953 + -1.0 870,953 + -0.5 870,953 + -2.4 870,953 + -0.4 870,953 + -1.9 870,954 - -0.1 870,954 - +0.1 870,954 - +0.6 870,954 - -1.2 870,954 - -0.2 870,954 - -1.4 870,969 + +1.1 870,970 - -0.9 870,970 - -0.7 871,015 + -0.8 871,015 + -0.8 871,015 + -0.2 871,015 + -1.9 871,015 + -0.4 871,016 - -0.2 871,016 - +0.1 871,016 - -1.1 871,016 - +0.1 871,057 - -0.4 871,389 + LRK53_RS03695 0.25 -2.3 871,390 - LRK53_RS03695 0.25 -0.4 871,467 + LRK53_RS03695 0.30 -1.5 871,467 + LRK53_RS03695 0.30 -0.6 871,467 + LRK53_RS03695 0.30 -1.1 871,467 + LRK53_RS03695 0.30 -1.5 871,467 + LRK53_RS03695 0.30 -0.2 871,467 + LRK53_RS03695 0.30 -0.9 871,467 + LRK53_RS03695 0.30 -0.1 871,468 - LRK53_RS03695 0.30 +0.7 871,468 - LRK53_RS03695 0.30 -0.5 871,602 + LRK53_RS03695 0.40 -0.7 871,602 + LRK53_RS03695 0.40 -1.7 871,603 - LRK53_RS03695 0.40 -0.9 871,603 - LRK53_RS03695 0.40 -0.1 871,603 - LRK53_RS03695 0.40 -1.2 871,603 - LRK53_RS03695 0.40 +0.1 871,617 + LRK53_RS03695 0.41 -0.4 871,617 + LRK53_RS03695 0.41 -1.3 871,618 - LRK53_RS03695 0.41 -0.2 871,626 + LRK53_RS03695 0.42 -0.5 871,626 + LRK53_RS03695 0.42 -1.1 871,626 + LRK53_RS03695 0.42 -0.4 871,626 + LRK53_RS03695 0.42 -2.7 871,626 + LRK53_RS03695 0.42 -1.6 871,626 + LRK53_RS03695 0.42 -2.0 871,627 - LRK53_RS03695 0.42 -2.3 871,627 - LRK53_RS03695 0.42 -1.3 871,627 - LRK53_RS03695 0.42 +1.1 871,627 - LRK53_RS03695 0.42 +0.8 871,627 - LRK53_RS03695 0.42 -0.6 871,627 - LRK53_RS03695 0.42 -1.6 871,627 - LRK53_RS03695 0.42 -1.3 871,627 - LRK53_RS03695 0.42 -0.8 871,627 - LRK53_RS03695 0.42 -2.5 871,627 - LRK53_RS03695 0.42 -1.9 871,647 + LRK53_RS03695 0.43 +0.3 871,647 + LRK53_RS03695 0.43 -1.5 871,647 + LRK53_RS03695 0.43 -1.3 871,647 + LRK53_RS03695 0.43 +0.6 871,647 + LRK53_RS03695 0.43 -0.2 871,647 + LRK53_RS03695 0.43 -0.6 871,647 + LRK53_RS03695 0.43 +0.1 871,647 + LRK53_RS03695 0.43 -2.3 871,647 + LRK53_RS03695 0.43 -0.8 871,647 + LRK53_RS03695 0.43 +0.8 871,647 + LRK53_RS03695 0.43 +1.4 871,647 + LRK53_RS03695 0.43 -1.5 871,647 + LRK53_RS03695 0.43 +0.2 871,647 + LRK53_RS03695 0.43 +0.7 871,647 + LRK53_RS03695 0.43 -1.8 871,647 + LRK53_RS03695 0.43 -2.0 871,647 + LRK53_RS03695 0.43 +0.8 871,648 - LRK53_RS03695 0.44 +0.2 871,648 - LRK53_RS03695 0.44 +2.4 871,648 - LRK53_RS03695 0.44 -0.4 871,648 - LRK53_RS03695 0.44 -0.5 871,648 - LRK53_RS03695 0.44 -0.6 871,648 - LRK53_RS03695 0.44 -0.2 871,648 - LRK53_RS03695 0.44 -0.9 871,648 - LRK53_RS03695 0.44 -2.7 871,648 - LRK53_RS03695 0.44 +0.2 871,648 - LRK53_RS03695 0.44 -0.5 871,648 - LRK53_RS03695 0.44 +1.2 871,648 - LRK53_RS03695 0.44 -1.0 871,648 - LRK53_RS03695 0.44 +0.6 871,648 - LRK53_RS03695 0.44 -2.6 871,648 - LRK53_RS03695 0.44 +0.1 871,656 + LRK53_RS03695 0.44 -2.1 871,657 - LRK53_RS03695 0.44 -0.6 871,657 - LRK53_RS03695 0.44 +2.4 871,752 + LRK53_RS03695 0.51 -1.9 871,752 + LRK53_RS03695 0.51 -0.4 871,752 + LRK53_RS03695 0.51 +0.7 871,752 + LRK53_RS03695 0.51 -1.6 871,752 + LRK53_RS03695 0.51 +0.9 871,752 + LRK53_RS03695 0.51 -0.7 871,753 - LRK53_RS03695 0.51 -0.4 871,753 - LRK53_RS03695 0.51 -2.2 871,753 - LRK53_RS03695 0.51 +0.1 871,753 - LRK53_RS03695 0.51 -2.5 871,753 - LRK53_RS03695 0.51 -1.4
Or see this region's nucleotide sequence