Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS06980

Experiment: Parafilmed volatile R2A_HEPES agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS06975 and ABIE51_RS06980 overlap by 4 nucleotidesABIE51_RS06980 and ABIE51_RS06985 are separated by 0 nucleotidesABIE51_RS06985 and ABIE51_RS06990 are separated by 4 nucleotides ABIE51_RS06975: ABIE51_RS06975 - type I methionyl aminopeptidase, at 1,504,529 to 1,505,305 _RS06975 ABIE51_RS06980: ABIE51_RS06980 - [protein-PII] uridylyltransferase, at 1,505,302 to 1,507,936 _RS06980 ABIE51_RS06985: ABIE51_RS06985 - 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase, at 1,507,937 to 1,508,836 _RS06985 ABIE51_RS06990: ABIE51_RS06990 - Spx/MgsR family RNA polymerase-binding regulatory protein, at 1,508,841 to 1,509,206 _RS06990 Position (kb) 1505 1506 1507 1508Strain fitness (log2 ratio) -2 -1 0 1 2at 1504.361 kb on - strandat 1504.361 kb on - strandat 1504.361 kb on - strandat 1504.361 kb on - strandat 1504.451 kb on + strandat 1504.468 kb on + strandat 1504.469 kb on - strandat 1504.519 kb on + strandat 1504.520 kb on - strandat 1504.520 kb on - strandat 1505.301 kb on + strandat 1505.301 kb on + strandat 1505.301 kb on + strandat 1505.302 kb on - strandat 1505.302 kb on - strandat 1505.390 kb on + strandat 1505.390 kb on + strandat 1506.645 kb on - strand, within ABIE51_RS06980at 1506.645 kb on - strand, within ABIE51_RS06980at 1508.853 kb on + strandat 1508.919 kb on + strand, within ABIE51_RS06990at 1508.920 kb on - strand, within ABIE51_RS06990at 1508.934 kb on + strand, within ABIE51_RS06990

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile R2A_HEPES agar plate with no fungus
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1,504,361 - +0.8
1,504,361 - +0.2
1,504,361 - -0.3
1,504,361 - +0.6
1,504,451 + +0.7
1,504,468 + -0.3
1,504,469 - -0.5
1,504,519 + +0.2
1,504,520 - +0.5
1,504,520 - +1.8
1,505,301 + +0.1
1,505,301 + +0.1
1,505,301 + +0.2
1,505,302 - -0.1
1,505,302 - +0.3
1,505,390 + -0.5
1,505,390 + +0.3
1,506,645 - ABIE51_RS06980 0.51 -2.4
1,506,645 - ABIE51_RS06980 0.51 +0.7
1,508,853 + +0.4
1,508,919 + ABIE51_RS06990 0.21 +0.9
1,508,920 - ABIE51_RS06990 0.22 -0.0
1,508,934 + ABIE51_RS06990 0.25 -0.5

Or see this region's nucleotide sequence