Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS00085

Experiment: Parafilmed volatile R2A_HEPES agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS00080 and ABIE51_RS00085 are separated by 8 nucleotidesABIE51_RS00085 and ABIE51_RS00090 are separated by 82 nucleotides ABIE51_RS00080: ABIE51_RS00080 - phosphomannomutase/phosphoglucomutase, at 15,041 to 16,918 _RS00080 ABIE51_RS00085: ABIE51_RS00085 - dUTP diphosphatase, at 16,927 to 17,385 _RS00085 ABIE51_RS00090: ABIE51_RS00090 - bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC, at 17,468 to 18,690 _RS00090 Position (kb) 16 17 18Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 16.308 kb on + strand, within ABIE51_RS00080at 16.308 kb on + strand, within ABIE51_RS00080at 16.308 kb on + strand, within ABIE51_RS00080at 16.309 kb on - strand, within ABIE51_RS00080at 16.309 kb on - strand, within ABIE51_RS00080at 16.332 kb on + strand, within ABIE51_RS00080at 16.332 kb on + strand, within ABIE51_RS00080at 16.332 kb on + strand, within ABIE51_RS00080at 16.332 kb on + strand, within ABIE51_RS00080at 16.332 kb on + strand, within ABIE51_RS00080at 16.332 kb on + strand, within ABIE51_RS00080at 16.332 kb on + strand, within ABIE51_RS00080at 16.332 kb on + strand, within ABIE51_RS00080at 16.332 kb on + strand, within ABIE51_RS00080at 16.332 kb on + strand, within ABIE51_RS00080at 16.332 kb on + strand, within ABIE51_RS00080at 16.333 kb on - strand, within ABIE51_RS00080at 16.333 kb on - strand, within ABIE51_RS00080at 16.333 kb on - strand, within ABIE51_RS00080at 16.333 kb on - strand, within ABIE51_RS00080at 16.333 kb on - strand, within ABIE51_RS00080at 16.333 kb on - strand, within ABIE51_RS00080at 16.333 kb on - strand, within ABIE51_RS00080at 16.333 kb on - strand, within ABIE51_RS00080at 16.333 kb on - strand, within ABIE51_RS00080at 16.333 kb on - strand, within ABIE51_RS00080at 16.333 kb on - strand, within ABIE51_RS00080at 16.333 kb on - strand, within ABIE51_RS00080at 16.333 kb on - strand, within ABIE51_RS00080at 16.333 kb on - strand, within ABIE51_RS00080at 16.352 kb on + strand, within ABIE51_RS00080at 16.352 kb on + strand, within ABIE51_RS00080at 16.352 kb on + strand, within ABIE51_RS00080at 16.353 kb on - strand, within ABIE51_RS00080at 16.353 kb on - strand, within ABIE51_RS00080at 16.353 kb on - strand, within ABIE51_RS00080at 16.353 kb on - strand, within ABIE51_RS00080at 16.353 kb on - strand, within ABIE51_RS00080at 16.353 kb on - strand, within ABIE51_RS00080at 16.353 kb on - strand, within ABIE51_RS00080at 16.398 kb on + strand, within ABIE51_RS00080at 16.398 kb on + strand, within ABIE51_RS00080at 16.398 kb on + strand, within ABIE51_RS00080at 16.398 kb on + strand, within ABIE51_RS00080at 16.399 kb on - strand, within ABIE51_RS00080at 16.399 kb on - strand, within ABIE51_RS00080at 16.399 kb on - strand, within ABIE51_RS00080at 16.399 kb on - strand, within ABIE51_RS00080at 16.399 kb on - strand, within ABIE51_RS00080at 16.399 kb on - strand, within ABIE51_RS00080at 16.399 kb on - strand, within ABIE51_RS00080at 16.399 kb on - strand, within ABIE51_RS00080at 16.534 kb on - strand, within ABIE51_RS00080at 16.557 kb on + strand, within ABIE51_RS00080at 16.797 kb on + strandat 16.798 kb on - strandat 17.058 kb on + strand, within ABIE51_RS00085at 17.058 kb on + strand, within ABIE51_RS00085at 17.058 kb on + strand, within ABIE51_RS00085at 17.058 kb on + strand, within ABIE51_RS00085at 17.059 kb on - strand, within ABIE51_RS00085at 17.059 kb on - strand, within ABIE51_RS00085at 17.059 kb on - strand, within ABIE51_RS00085at 17.059 kb on - strand, within ABIE51_RS00085at 17.059 kb on - strand, within ABIE51_RS00085at 17.059 kb on - strand, within ABIE51_RS00085at 17.083 kb on + strand, within ABIE51_RS00085at 17.084 kb on - strand, within ABIE51_RS00085at 17.084 kb on - strand, within ABIE51_RS00085at 17.108 kb on + strand, within ABIE51_RS00085at 17.157 kb on + strand, within ABIE51_RS00085at 17.157 kb on + strand, within ABIE51_RS00085at 17.157 kb on + strand, within ABIE51_RS00085at 17.157 kb on + strand, within ABIE51_RS00085at 17.157 kb on + strand, within ABIE51_RS00085at 17.158 kb on - strand, within ABIE51_RS00085at 17.158 kb on - strand, within ABIE51_RS00085at 17.158 kb on - strand, within ABIE51_RS00085at 17.318 kb on + strand, within ABIE51_RS00085at 17.318 kb on + strand, within ABIE51_RS00085at 17.318 kb on + strand, within ABIE51_RS00085at 17.318 kb on + strand, within ABIE51_RS00085at 17.318 kb on + strand, within ABIE51_RS00085at 17.413 kb on - strandat 17.417 kb on + strandat 17.417 kb on + strandat 17.417 kb on + strandat 17.417 kb on + strandat 17.418 kb on - strandat 17.418 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile R2A_HEPES agar plate with no fungus
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16,308 + ABIE51_RS00080 0.67 -0.5
16,308 + ABIE51_RS00080 0.67 -1.6
16,308 + ABIE51_RS00080 0.67 -0.2
16,309 - ABIE51_RS00080 0.68 +0.3
16,309 - ABIE51_RS00080 0.68 +2.1
16,332 + ABIE51_RS00080 0.69 -0.2
16,332 + ABIE51_RS00080 0.69 +0.0
16,332 + ABIE51_RS00080 0.69 +1.2
16,332 + ABIE51_RS00080 0.69 -0.8
16,332 + ABIE51_RS00080 0.69 -0.3
16,332 + ABIE51_RS00080 0.69 -0.4
16,332 + ABIE51_RS00080 0.69 +0.7
16,332 + ABIE51_RS00080 0.69 -0.2
16,332 + ABIE51_RS00080 0.69 +2.1
16,332 + ABIE51_RS00080 0.69 +0.9
16,332 + ABIE51_RS00080 0.69 -0.2
16,333 - ABIE51_RS00080 0.69 -1.2
16,333 - ABIE51_RS00080 0.69 +0.7
16,333 - ABIE51_RS00080 0.69 -0.7
16,333 - ABIE51_RS00080 0.69 +0.8
16,333 - ABIE51_RS00080 0.69 +0.1
16,333 - ABIE51_RS00080 0.69 -1.6
16,333 - ABIE51_RS00080 0.69 +0.3
16,333 - ABIE51_RS00080 0.69 -1.2
16,333 - ABIE51_RS00080 0.69 -0.4
16,333 - ABIE51_RS00080 0.69 -1.2
16,333 - ABIE51_RS00080 0.69 +0.1
16,333 - ABIE51_RS00080 0.69 +0.1
16,333 - ABIE51_RS00080 0.69 +0.6
16,333 - ABIE51_RS00080 0.69 +0.8
16,352 + ABIE51_RS00080 0.70 +1.0
16,352 + ABIE51_RS00080 0.70 +0.6
16,352 + ABIE51_RS00080 0.70 -0.9
16,353 - ABIE51_RS00080 0.70 -0.3
16,353 - ABIE51_RS00080 0.70 +0.6
16,353 - ABIE51_RS00080 0.70 +0.6
16,353 - ABIE51_RS00080 0.70 +0.1
16,353 - ABIE51_RS00080 0.70 +0.2
16,353 - ABIE51_RS00080 0.70 +0.7
16,353 - ABIE51_RS00080 0.70 +0.1
16,398 + ABIE51_RS00080 0.72 +1.1
16,398 + ABIE51_RS00080 0.72 +1.1
16,398 + ABIE51_RS00080 0.72 -1.3
16,398 + ABIE51_RS00080 0.72 +0.1
16,399 - ABIE51_RS00080 0.72 +0.6
16,399 - ABIE51_RS00080 0.72 -0.4
16,399 - ABIE51_RS00080 0.72 -0.1
16,399 - ABIE51_RS00080 0.72 -0.2
16,399 - ABIE51_RS00080 0.72 -0.1
16,399 - ABIE51_RS00080 0.72 +0.3
16,399 - ABIE51_RS00080 0.72 +0.9
16,399 - ABIE51_RS00080 0.72 -0.3
16,534 - ABIE51_RS00080 0.79 +0.2
16,557 + ABIE51_RS00080 0.81 -0.3
16,797 + +0.9
16,798 - -0.0
17,058 + ABIE51_RS00085 0.29 -1.5
17,058 + ABIE51_RS00085 0.29 -1.1
17,058 + ABIE51_RS00085 0.29 +1.4
17,058 + ABIE51_RS00085 0.29 +2.1
17,059 - ABIE51_RS00085 0.29 -0.7
17,059 - ABIE51_RS00085 0.29 -0.8
17,059 - ABIE51_RS00085 0.29 -1.9
17,059 - ABIE51_RS00085 0.29 -0.7
17,059 - ABIE51_RS00085 0.29 -1.0
17,059 - ABIE51_RS00085 0.29 -0.5
17,083 + ABIE51_RS00085 0.34 -0.2
17,084 - ABIE51_RS00085 0.34 +0.9
17,084 - ABIE51_RS00085 0.34 +1.1
17,108 + ABIE51_RS00085 0.39 +0.7
17,157 + ABIE51_RS00085 0.50 -0.8
17,157 + ABIE51_RS00085 0.50 -0.9
17,157 + ABIE51_RS00085 0.50 -3.1
17,157 + ABIE51_RS00085 0.50 -1.7
17,157 + ABIE51_RS00085 0.50 +2.3
17,158 - ABIE51_RS00085 0.50 -0.2
17,158 - ABIE51_RS00085 0.50 +0.8
17,158 - ABIE51_RS00085 0.50 -2.4
17,318 + ABIE51_RS00085 0.85 -2.6
17,318 + ABIE51_RS00085 0.85 -0.9
17,318 + ABIE51_RS00085 0.85 +0.6
17,318 + ABIE51_RS00085 0.85 -0.2
17,318 + ABIE51_RS00085 0.85 -0.7
17,413 - -0.6
17,417 + +0.3
17,417 + -0.1
17,417 + -0.5
17,417 + -0.5
17,418 - +0.8
17,418 - +0.5

Or see this region's nucleotide sequence