Experiment: Parafilmed volatile R2A_HEPES agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS00080 and ABIE51_RS00085 are separated by 8 nucleotides ABIE51_RS00085 and ABIE51_RS00090 are separated by 82 nucleotides
ABIE51_RS00080: ABIE51_RS00080 - phosphomannomutase/phosphoglucomutase, at 15,041 to 16,918
_RS00080
ABIE51_RS00085: ABIE51_RS00085 - dUTP diphosphatase, at 16,927 to 17,385
_RS00085
ABIE51_RS00090: ABIE51_RS00090 - bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC, at 17,468 to 18,690
_RS00090
Position (kb)
16
17
18 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 16.308 kb on + strand, within ABIE51_RS00080 at 16.308 kb on + strand, within ABIE51_RS00080 at 16.308 kb on + strand, within ABIE51_RS00080 at 16.309 kb on - strand, within ABIE51_RS00080 at 16.309 kb on - strand, within ABIE51_RS00080 at 16.332 kb on + strand, within ABIE51_RS00080 at 16.332 kb on + strand, within ABIE51_RS00080 at 16.332 kb on + strand, within ABIE51_RS00080 at 16.332 kb on + strand, within ABIE51_RS00080 at 16.332 kb on + strand, within ABIE51_RS00080 at 16.332 kb on + strand, within ABIE51_RS00080 at 16.332 kb on + strand, within ABIE51_RS00080 at 16.332 kb on + strand, within ABIE51_RS00080 at 16.332 kb on + strand, within ABIE51_RS00080 at 16.332 kb on + strand, within ABIE51_RS00080 at 16.332 kb on + strand, within ABIE51_RS00080 at 16.333 kb on - strand, within ABIE51_RS00080 at 16.333 kb on - strand, within ABIE51_RS00080 at 16.333 kb on - strand, within ABIE51_RS00080 at 16.333 kb on - strand, within ABIE51_RS00080 at 16.333 kb on - strand, within ABIE51_RS00080 at 16.333 kb on - strand, within ABIE51_RS00080 at 16.333 kb on - strand, within ABIE51_RS00080 at 16.333 kb on - strand, within ABIE51_RS00080 at 16.333 kb on - strand, within ABIE51_RS00080 at 16.333 kb on - strand, within ABIE51_RS00080 at 16.333 kb on - strand, within ABIE51_RS00080 at 16.333 kb on - strand, within ABIE51_RS00080 at 16.333 kb on - strand, within ABIE51_RS00080 at 16.333 kb on - strand, within ABIE51_RS00080 at 16.352 kb on + strand, within ABIE51_RS00080 at 16.352 kb on + strand, within ABIE51_RS00080 at 16.352 kb on + strand, within ABIE51_RS00080 at 16.353 kb on - strand, within ABIE51_RS00080 at 16.353 kb on - strand, within ABIE51_RS00080 at 16.353 kb on - strand, within ABIE51_RS00080 at 16.353 kb on - strand, within ABIE51_RS00080 at 16.353 kb on - strand, within ABIE51_RS00080 at 16.353 kb on - strand, within ABIE51_RS00080 at 16.353 kb on - strand, within ABIE51_RS00080 at 16.398 kb on + strand, within ABIE51_RS00080 at 16.398 kb on + strand, within ABIE51_RS00080 at 16.398 kb on + strand, within ABIE51_RS00080 at 16.398 kb on + strand, within ABIE51_RS00080 at 16.399 kb on - strand, within ABIE51_RS00080 at 16.399 kb on - strand, within ABIE51_RS00080 at 16.399 kb on - strand, within ABIE51_RS00080 at 16.399 kb on - strand, within ABIE51_RS00080 at 16.399 kb on - strand, within ABIE51_RS00080 at 16.399 kb on - strand, within ABIE51_RS00080 at 16.399 kb on - strand, within ABIE51_RS00080 at 16.399 kb on - strand, within ABIE51_RS00080 at 16.534 kb on - strand, within ABIE51_RS00080 at 16.557 kb on + strand, within ABIE51_RS00080 at 16.797 kb on + strand at 16.798 kb on - strand at 17.058 kb on + strand, within ABIE51_RS00085 at 17.058 kb on + strand, within ABIE51_RS00085 at 17.058 kb on + strand, within ABIE51_RS00085 at 17.058 kb on + strand, within ABIE51_RS00085 at 17.059 kb on - strand, within ABIE51_RS00085 at 17.059 kb on - strand, within ABIE51_RS00085 at 17.059 kb on - strand, within ABIE51_RS00085 at 17.059 kb on - strand, within ABIE51_RS00085 at 17.059 kb on - strand, within ABIE51_RS00085 at 17.059 kb on - strand, within ABIE51_RS00085 at 17.083 kb on + strand, within ABIE51_RS00085 at 17.084 kb on - strand, within ABIE51_RS00085 at 17.084 kb on - strand, within ABIE51_RS00085 at 17.108 kb on + strand, within ABIE51_RS00085 at 17.157 kb on + strand, within ABIE51_RS00085 at 17.157 kb on + strand, within ABIE51_RS00085 at 17.157 kb on + strand, within ABIE51_RS00085 at 17.157 kb on + strand, within ABIE51_RS00085 at 17.157 kb on + strand, within ABIE51_RS00085 at 17.158 kb on - strand, within ABIE51_RS00085 at 17.158 kb on - strand, within ABIE51_RS00085 at 17.158 kb on - strand, within ABIE51_RS00085 at 17.318 kb on + strand, within ABIE51_RS00085 at 17.318 kb on + strand, within ABIE51_RS00085 at 17.318 kb on + strand, within ABIE51_RS00085 at 17.318 kb on + strand, within ABIE51_RS00085 at 17.318 kb on + strand, within ABIE51_RS00085 at 17.413 kb on - strand at 17.417 kb on + strand at 17.417 kb on + strand at 17.417 kb on + strand at 17.417 kb on + strand at 17.418 kb on - strand at 17.418 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile R2A_HEPES agar plate with no fungus remove 16,308 + ABIE51_RS00080 0.67 -0.5 16,308 + ABIE51_RS00080 0.67 -1.6 16,308 + ABIE51_RS00080 0.67 -0.2 16,309 - ABIE51_RS00080 0.68 +0.3 16,309 - ABIE51_RS00080 0.68 +2.1 16,332 + ABIE51_RS00080 0.69 -0.2 16,332 + ABIE51_RS00080 0.69 +0.0 16,332 + ABIE51_RS00080 0.69 +1.2 16,332 + ABIE51_RS00080 0.69 -0.8 16,332 + ABIE51_RS00080 0.69 -0.3 16,332 + ABIE51_RS00080 0.69 -0.4 16,332 + ABIE51_RS00080 0.69 +0.7 16,332 + ABIE51_RS00080 0.69 -0.2 16,332 + ABIE51_RS00080 0.69 +2.1 16,332 + ABIE51_RS00080 0.69 +0.9 16,332 + ABIE51_RS00080 0.69 -0.2 16,333 - ABIE51_RS00080 0.69 -1.2 16,333 - ABIE51_RS00080 0.69 +0.7 16,333 - ABIE51_RS00080 0.69 -0.7 16,333 - ABIE51_RS00080 0.69 +0.8 16,333 - ABIE51_RS00080 0.69 +0.1 16,333 - ABIE51_RS00080 0.69 -1.6 16,333 - ABIE51_RS00080 0.69 +0.3 16,333 - ABIE51_RS00080 0.69 -1.2 16,333 - ABIE51_RS00080 0.69 -0.4 16,333 - ABIE51_RS00080 0.69 -1.2 16,333 - ABIE51_RS00080 0.69 +0.1 16,333 - ABIE51_RS00080 0.69 +0.1 16,333 - ABIE51_RS00080 0.69 +0.6 16,333 - ABIE51_RS00080 0.69 +0.8 16,352 + ABIE51_RS00080 0.70 +1.0 16,352 + ABIE51_RS00080 0.70 +0.6 16,352 + ABIE51_RS00080 0.70 -0.9 16,353 - ABIE51_RS00080 0.70 -0.3 16,353 - ABIE51_RS00080 0.70 +0.6 16,353 - ABIE51_RS00080 0.70 +0.6 16,353 - ABIE51_RS00080 0.70 +0.1 16,353 - ABIE51_RS00080 0.70 +0.2 16,353 - ABIE51_RS00080 0.70 +0.7 16,353 - ABIE51_RS00080 0.70 +0.1 16,398 + ABIE51_RS00080 0.72 +1.1 16,398 + ABIE51_RS00080 0.72 +1.1 16,398 + ABIE51_RS00080 0.72 -1.3 16,398 + ABIE51_RS00080 0.72 +0.1 16,399 - ABIE51_RS00080 0.72 +0.6 16,399 - ABIE51_RS00080 0.72 -0.4 16,399 - ABIE51_RS00080 0.72 -0.1 16,399 - ABIE51_RS00080 0.72 -0.2 16,399 - ABIE51_RS00080 0.72 -0.1 16,399 - ABIE51_RS00080 0.72 +0.3 16,399 - ABIE51_RS00080 0.72 +0.9 16,399 - ABIE51_RS00080 0.72 -0.3 16,534 - ABIE51_RS00080 0.79 +0.2 16,557 + ABIE51_RS00080 0.81 -0.3 16,797 + +0.9 16,798 - -0.0 17,058 + ABIE51_RS00085 0.29 -1.5 17,058 + ABIE51_RS00085 0.29 -1.1 17,058 + ABIE51_RS00085 0.29 +1.4 17,058 + ABIE51_RS00085 0.29 +2.1 17,059 - ABIE51_RS00085 0.29 -0.7 17,059 - ABIE51_RS00085 0.29 -0.8 17,059 - ABIE51_RS00085 0.29 -1.9 17,059 - ABIE51_RS00085 0.29 -0.7 17,059 - ABIE51_RS00085 0.29 -1.0 17,059 - ABIE51_RS00085 0.29 -0.5 17,083 + ABIE51_RS00085 0.34 -0.2 17,084 - ABIE51_RS00085 0.34 +0.9 17,084 - ABIE51_RS00085 0.34 +1.1 17,108 + ABIE51_RS00085 0.39 +0.7 17,157 + ABIE51_RS00085 0.50 -0.8 17,157 + ABIE51_RS00085 0.50 -0.9 17,157 + ABIE51_RS00085 0.50 -3.1 17,157 + ABIE51_RS00085 0.50 -1.7 17,157 + ABIE51_RS00085 0.50 +2.3 17,158 - ABIE51_RS00085 0.50 -0.2 17,158 - ABIE51_RS00085 0.50 +0.8 17,158 - ABIE51_RS00085 0.50 -2.4 17,318 + ABIE51_RS00085 0.85 -2.6 17,318 + ABIE51_RS00085 0.85 -0.9 17,318 + ABIE51_RS00085 0.85 +0.6 17,318 + ABIE51_RS00085 0.85 -0.2 17,318 + ABIE51_RS00085 0.85 -0.7 17,413 - -0.6 17,417 + +0.3 17,417 + -0.1 17,417 + -0.5 17,417 + -0.5 17,418 - +0.8 17,418 - +0.5
Or see this region's nucleotide sequence