Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS15020

Experiment: Biofilm; Day2; SGW; pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS15015 and LRK53_RS15020 are separated by 3 nucleotidesLRK53_RS15020 and LRK53_RS15025 overlap by 4 nucleotides LRK53_RS15015: LRK53_RS15015 - flagellar biosynthesis protein FlhB, at 3,282,784 to 3,283,920 _RS15015 LRK53_RS15020: LRK53_RS15020 - flagellar biosynthetic protein FliR, at 3,283,924 to 3,284,694 _RS15020 LRK53_RS15025: LRK53_RS15025 - flagellar biosynthesis protein FliQ, at 3,284,691 to 3,284,960 _RS15025 Position (kb) 3283 3284 3285Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3282.953 kb on + strand, within LRK53_RS15015at 3282.953 kb on + strand, within LRK53_RS15015at 3282.953 kb on + strand, within LRK53_RS15015at 3282.953 kb on + strand, within LRK53_RS15015at 3282.953 kb on + strand, within LRK53_RS15015at 3282.953 kb on + strand, within LRK53_RS15015at 3282.953 kb on + strand, within LRK53_RS15015at 3282.953 kb on + strand, within LRK53_RS15015at 3282.953 kb on + strand, within LRK53_RS15015at 3282.953 kb on + strand, within LRK53_RS15015at 3282.953 kb on + strand, within LRK53_RS15015at 3282.953 kb on + strand, within LRK53_RS15015at 3282.953 kb on + strand, within LRK53_RS15015at 3282.953 kb on + strand, within LRK53_RS15015at 3282.953 kb on + strand, within LRK53_RS15015at 3282.953 kb on + strand, within LRK53_RS15015at 3282.954 kb on - strand, within LRK53_RS15015at 3282.954 kb on - strand, within LRK53_RS15015at 3282.954 kb on - strand, within LRK53_RS15015at 3282.954 kb on - strand, within LRK53_RS15015at 3282.954 kb on - strand, within LRK53_RS15015at 3282.954 kb on - strand, within LRK53_RS15015at 3282.954 kb on - strand, within LRK53_RS15015at 3282.954 kb on - strand, within LRK53_RS15015at 3282.954 kb on - strand, within LRK53_RS15015at 3282.954 kb on - strand, within LRK53_RS15015at 3282.954 kb on - strand, within LRK53_RS15015at 3282.954 kb on - strand, within LRK53_RS15015at 3282.954 kb on - strand, within LRK53_RS15015at 3282.954 kb on - strand, within LRK53_RS15015at 3282.954 kb on - strand, within LRK53_RS15015at 3282.954 kb on - strand, within LRK53_RS15015at 3282.954 kb on - strand, within LRK53_RS15015at 3282.954 kb on - strand, within LRK53_RS15015at 3282.954 kb on - strand, within LRK53_RS15015at 3283.201 kb on + strand, within LRK53_RS15015at 3283.202 kb on - strand, within LRK53_RS15015at 3283.202 kb on - strand, within LRK53_RS15015at 3283.202 kb on - strand, within LRK53_RS15015at 3283.289 kb on + strand, within LRK53_RS15015at 3283.289 kb on + strand, within LRK53_RS15015at 3283.289 kb on + strand, within LRK53_RS15015at 3283.290 kb on - strand, within LRK53_RS15015at 3283.290 kb on - strand, within LRK53_RS15015at 3283.290 kb on - strand, within LRK53_RS15015at 3283.290 kb on - strand, within LRK53_RS15015at 3283.352 kb on - strand, within LRK53_RS15015at 3283.352 kb on - strand, within LRK53_RS15015at 3283.661 kb on + strand, within LRK53_RS15015at 3283.661 kb on + strand, within LRK53_RS15015at 3283.661 kb on + strand, within LRK53_RS15015at 3283.661 kb on + strand, within LRK53_RS15015at 3283.661 kb on + strand, within LRK53_RS15015at 3283.661 kb on + strand, within LRK53_RS15015at 3283.662 kb on - strand, within LRK53_RS15015at 3283.662 kb on - strand, within LRK53_RS15015at 3283.662 kb on - strand, within LRK53_RS15015at 3283.662 kb on - strand, within LRK53_RS15015at 3283.662 kb on - strand, within LRK53_RS15015at 3283.662 kb on - strand, within LRK53_RS15015at 3283.663 kb on + strand, within LRK53_RS15015at 3283.663 kb on + strand, within LRK53_RS15015at 3283.663 kb on + strand, within LRK53_RS15015at 3283.663 kb on + strand, within LRK53_RS15015at 3283.664 kb on - strand, within LRK53_RS15015at 3283.664 kb on - strand, within LRK53_RS15015at 3283.664 kb on - strand, within LRK53_RS15015at 3283.664 kb on - strand, within LRK53_RS15015at 3283.664 kb on - strand, within LRK53_RS15015at 3283.664 kb on - strand, within LRK53_RS15015at 3283.721 kb on + strand, within LRK53_RS15015at 3283.721 kb on + strand, within LRK53_RS15015at 3283.721 kb on + strand, within LRK53_RS15015at 3283.722 kb on - strand, within LRK53_RS15015at 3283.722 kb on - strand, within LRK53_RS15015at 3284.312 kb on + strand, within LRK53_RS15020at 3284.312 kb on + strand, within LRK53_RS15020at 3284.313 kb on - strand, within LRK53_RS15020at 3284.313 kb on - strand, within LRK53_RS15020at 3284.313 kb on - strand, within LRK53_RS15020at 3284.313 kb on - strand, within LRK53_RS15020at 3284.313 kb on - strand, within LRK53_RS15020at 3284.734 kb on + strand, within LRK53_RS15025at 3284.734 kb on + strand, within LRK53_RS15025at 3284.734 kb on + strand, within LRK53_RS15025at 3284.734 kb on + strand, within LRK53_RS15025at 3284.734 kb on + strand, within LRK53_RS15025at 3284.734 kb on + strand, within LRK53_RS15025at 3284.734 kb on + strand, within LRK53_RS15025at 3284.734 kb on + strand, within LRK53_RS15025at 3284.734 kb on + strand, within LRK53_RS15025at 3284.734 kb on + strand, within LRK53_RS15025at 3284.734 kb on + strand, within LRK53_RS15025at 3284.735 kb on - strand, within LRK53_RS15025at 3284.735 kb on - strand, within LRK53_RS15025at 3284.735 kb on - strand, within LRK53_RS15025at 3284.735 kb on - strand, within LRK53_RS15025at 3284.735 kb on - strand, within LRK53_RS15025at 3284.735 kb on - strand, within LRK53_RS15025at 3284.735 kb on - strand, within LRK53_RS15025at 3284.735 kb on - strand, within LRK53_RS15025at 3284.735 kb on - strand, within LRK53_RS15025at 3284.917 kb on + strand, within LRK53_RS15025at 3284.917 kb on + strand, within LRK53_RS15025at 3284.917 kb on + strand, within LRK53_RS15025at 3284.917 kb on + strand, within LRK53_RS15025at 3284.917 kb on + strand, within LRK53_RS15025at 3284.917 kb on + strand, within LRK53_RS15025at 3284.917 kb on + strand, within LRK53_RS15025at 3284.918 kb on - strand, within LRK53_RS15025at 3284.918 kb on - strand, within LRK53_RS15025at 3284.918 kb on - strand, within LRK53_RS15025at 3284.918 kb on - strand, within LRK53_RS15025at 3284.918 kb on - strand, within LRK53_RS15025at 3284.918 kb on - strand, within LRK53_RS15025at 3284.918 kb on - strand, within LRK53_RS15025at 3285.023 kb on + strandat 3285.024 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7
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3,282,953 + LRK53_RS15015 0.15 -0.7
3,282,953 + LRK53_RS15015 0.15 -1.5
3,282,953 + LRK53_RS15015 0.15 -1.2
3,282,953 + LRK53_RS15015 0.15 -1.2
3,282,953 + LRK53_RS15015 0.15 +0.2
3,282,953 + LRK53_RS15015 0.15 -1.0
3,282,953 + LRK53_RS15015 0.15 -0.7
3,282,953 + LRK53_RS15015 0.15 -0.1
3,282,953 + LRK53_RS15015 0.15 -1.2
3,282,953 + LRK53_RS15015 0.15 +1.5
3,282,953 + LRK53_RS15015 0.15 -0.3
3,282,953 + LRK53_RS15015 0.15 -1.4
3,282,953 + LRK53_RS15015 0.15 -1.7
3,282,953 + LRK53_RS15015 0.15 -0.9
3,282,953 + LRK53_RS15015 0.15 +0.2
3,282,953 + LRK53_RS15015 0.15 -1.0
3,282,954 - LRK53_RS15015 0.15 +0.3
3,282,954 - LRK53_RS15015 0.15 +1.3
3,282,954 - LRK53_RS15015 0.15 -2.3
3,282,954 - LRK53_RS15015 0.15 -0.6
3,282,954 - LRK53_RS15015 0.15 -1.3
3,282,954 - LRK53_RS15015 0.15 +1.6
3,282,954 - LRK53_RS15015 0.15 +1.1
3,282,954 - LRK53_RS15015 0.15 -1.4
3,282,954 - LRK53_RS15015 0.15 -0.7
3,282,954 - LRK53_RS15015 0.15 +1.7
3,282,954 - LRK53_RS15015 0.15 +0.2
3,282,954 - LRK53_RS15015 0.15 -1.8
3,282,954 - LRK53_RS15015 0.15 +2.0
3,282,954 - LRK53_RS15015 0.15 +1.2
3,282,954 - LRK53_RS15015 0.15 -1.9
3,282,954 - LRK53_RS15015 0.15 -0.3
3,282,954 - LRK53_RS15015 0.15 -0.7
3,282,954 - LRK53_RS15015 0.15 +2.4
3,282,954 - LRK53_RS15015 0.15 -0.7
3,283,201 + LRK53_RS15015 0.37 -0.3
3,283,202 - LRK53_RS15015 0.37 +0.8
3,283,202 - LRK53_RS15015 0.37 -0.4
3,283,202 - LRK53_RS15015 0.37 +0.5
3,283,289 + LRK53_RS15015 0.44 -0.5
3,283,289 + LRK53_RS15015 0.44 -0.2
3,283,289 + LRK53_RS15015 0.44 +1.9
3,283,290 - LRK53_RS15015 0.45 -1.3
3,283,290 - LRK53_RS15015 0.45 -0.3
3,283,290 - LRK53_RS15015 0.45 -0.8
3,283,290 - LRK53_RS15015 0.45 +0.2
3,283,352 - LRK53_RS15015 0.50 +0.9
3,283,352 - LRK53_RS15015 0.50 -0.3
3,283,661 + LRK53_RS15015 0.77 -1.3
3,283,661 + LRK53_RS15015 0.77 -1.6
3,283,661 + LRK53_RS15015 0.77 -0.1
3,283,661 + LRK53_RS15015 0.77 -0.5
3,283,661 + LRK53_RS15015 0.77 +0.5
3,283,661 + LRK53_RS15015 0.77 -1.4
3,283,662 - LRK53_RS15015 0.77 -2.4
3,283,662 - LRK53_RS15015 0.77 -0.3
3,283,662 - LRK53_RS15015 0.77 -0.7
3,283,662 - LRK53_RS15015 0.77 +0.1
3,283,662 - LRK53_RS15015 0.77 -0.7
3,283,662 - LRK53_RS15015 0.77 -2.3
3,283,663 + LRK53_RS15015 0.77 -0.8
3,283,663 + LRK53_RS15015 0.77 -0.7
3,283,663 + LRK53_RS15015 0.77 -1.1
3,283,663 + LRK53_RS15015 0.77 +0.5
3,283,664 - LRK53_RS15015 0.77 +3.2
3,283,664 - LRK53_RS15015 0.77 -0.8
3,283,664 - LRK53_RS15015 0.77 -3.3
3,283,664 - LRK53_RS15015 0.77 +0.9
3,283,664 - LRK53_RS15015 0.77 -1.6
3,283,664 - LRK53_RS15015 0.77 -1.8
3,283,721 + LRK53_RS15015 0.82 -0.9
3,283,721 + LRK53_RS15015 0.82 -0.7
3,283,721 + LRK53_RS15015 0.82 -1.4
3,283,722 - LRK53_RS15015 0.82 -0.6
3,283,722 - LRK53_RS15015 0.82 +0.9
3,284,312 + LRK53_RS15020 0.50 -1.4
3,284,312 + LRK53_RS15020 0.50 -0.8
3,284,313 - LRK53_RS15020 0.50 +0.3
3,284,313 - LRK53_RS15020 0.50 -0.9
3,284,313 - LRK53_RS15020 0.50 +0.0
3,284,313 - LRK53_RS15020 0.50 +0.5
3,284,313 - LRK53_RS15020 0.50 -0.2
3,284,734 + LRK53_RS15025 0.16 +2.1
3,284,734 + LRK53_RS15025 0.16 -0.5
3,284,734 + LRK53_RS15025 0.16 -0.1
3,284,734 + LRK53_RS15025 0.16 -1.2
3,284,734 + LRK53_RS15025 0.16 -0.0
3,284,734 + LRK53_RS15025 0.16 -1.3
3,284,734 + LRK53_RS15025 0.16 -2.5
3,284,734 + LRK53_RS15025 0.16 -1.3
3,284,734 + LRK53_RS15025 0.16 -0.1
3,284,734 + LRK53_RS15025 0.16 +0.6
3,284,734 + LRK53_RS15025 0.16 -2.8
3,284,735 - LRK53_RS15025 0.16 +0.4
3,284,735 - LRK53_RS15025 0.16 +0.3
3,284,735 - LRK53_RS15025 0.16 +1.1
3,284,735 - LRK53_RS15025 0.16 +1.9
3,284,735 - LRK53_RS15025 0.16 -1.4
3,284,735 - LRK53_RS15025 0.16 +2.0
3,284,735 - LRK53_RS15025 0.16 +1.4
3,284,735 - LRK53_RS15025 0.16 +0.9
3,284,735 - LRK53_RS15025 0.16 -0.7
3,284,917 + LRK53_RS15025 0.84 -0.1
3,284,917 + LRK53_RS15025 0.84 -0.0
3,284,917 + LRK53_RS15025 0.84 -1.0
3,284,917 + LRK53_RS15025 0.84 -1.4
3,284,917 + LRK53_RS15025 0.84 -0.3
3,284,917 + LRK53_RS15025 0.84 +0.5
3,284,917 + LRK53_RS15025 0.84 -1.3
3,284,918 - LRK53_RS15025 0.84 -1.1
3,284,918 - LRK53_RS15025 0.84 +0.5
3,284,918 - LRK53_RS15025 0.84 -1.8
3,284,918 - LRK53_RS15025 0.84 -2.0
3,284,918 - LRK53_RS15025 0.84 +0.8
3,284,918 - LRK53_RS15025 0.84 -0.0
3,284,918 - LRK53_RS15025 0.84 -1.0
3,285,023 + -0.7
3,285,024 - -0.3

Or see this region's nucleotide sequence