Experiment: Biofilm; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS15015 and LRK53_RS15020 are separated by 3 nucleotides LRK53_RS15020 and LRK53_RS15025 overlap by 4 nucleotides
LRK53_RS15015: LRK53_RS15015 - flagellar biosynthesis protein FlhB, at 3,282,784 to 3,283,920
_RS15015
LRK53_RS15020: LRK53_RS15020 - flagellar biosynthetic protein FliR, at 3,283,924 to 3,284,694
_RS15020
LRK53_RS15025: LRK53_RS15025 - flagellar biosynthesis protein FliQ, at 3,284,691 to 3,284,960
_RS15025
Position (kb)
3283
3284
3285 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3282.953 kb on + strand, within LRK53_RS15015 at 3282.953 kb on + strand, within LRK53_RS15015 at 3282.953 kb on + strand, within LRK53_RS15015 at 3282.953 kb on + strand, within LRK53_RS15015 at 3282.953 kb on + strand, within LRK53_RS15015 at 3282.953 kb on + strand, within LRK53_RS15015 at 3282.953 kb on + strand, within LRK53_RS15015 at 3282.953 kb on + strand, within LRK53_RS15015 at 3282.953 kb on + strand, within LRK53_RS15015 at 3282.953 kb on + strand, within LRK53_RS15015 at 3282.953 kb on + strand, within LRK53_RS15015 at 3282.953 kb on + strand, within LRK53_RS15015 at 3282.953 kb on + strand, within LRK53_RS15015 at 3282.953 kb on + strand, within LRK53_RS15015 at 3282.953 kb on + strand, within LRK53_RS15015 at 3282.953 kb on + strand, within LRK53_RS15015 at 3282.954 kb on - strand, within LRK53_RS15015 at 3282.954 kb on - strand, within LRK53_RS15015 at 3282.954 kb on - strand, within LRK53_RS15015 at 3282.954 kb on - strand, within LRK53_RS15015 at 3282.954 kb on - strand, within LRK53_RS15015 at 3282.954 kb on - strand, within LRK53_RS15015 at 3282.954 kb on - strand, within LRK53_RS15015 at 3282.954 kb on - strand, within LRK53_RS15015 at 3282.954 kb on - strand, within LRK53_RS15015 at 3282.954 kb on - strand, within LRK53_RS15015 at 3282.954 kb on - strand, within LRK53_RS15015 at 3282.954 kb on - strand, within LRK53_RS15015 at 3282.954 kb on - strand, within LRK53_RS15015 at 3282.954 kb on - strand, within LRK53_RS15015 at 3282.954 kb on - strand, within LRK53_RS15015 at 3282.954 kb on - strand, within LRK53_RS15015 at 3282.954 kb on - strand, within LRK53_RS15015 at 3282.954 kb on - strand, within LRK53_RS15015 at 3282.954 kb on - strand, within LRK53_RS15015 at 3283.201 kb on + strand, within LRK53_RS15015 at 3283.202 kb on - strand, within LRK53_RS15015 at 3283.202 kb on - strand, within LRK53_RS15015 at 3283.202 kb on - strand, within LRK53_RS15015 at 3283.289 kb on + strand, within LRK53_RS15015 at 3283.289 kb on + strand, within LRK53_RS15015 at 3283.289 kb on + strand, within LRK53_RS15015 at 3283.290 kb on - strand, within LRK53_RS15015 at 3283.290 kb on - strand, within LRK53_RS15015 at 3283.290 kb on - strand, within LRK53_RS15015 at 3283.290 kb on - strand, within LRK53_RS15015 at 3283.352 kb on - strand, within LRK53_RS15015 at 3283.352 kb on - strand, within LRK53_RS15015 at 3283.661 kb on + strand, within LRK53_RS15015 at 3283.661 kb on + strand, within LRK53_RS15015 at 3283.661 kb on + strand, within LRK53_RS15015 at 3283.661 kb on + strand, within LRK53_RS15015 at 3283.661 kb on + strand, within LRK53_RS15015 at 3283.661 kb on + strand, within LRK53_RS15015 at 3283.662 kb on - strand, within LRK53_RS15015 at 3283.662 kb on - strand, within LRK53_RS15015 at 3283.662 kb on - strand, within LRK53_RS15015 at 3283.662 kb on - strand, within LRK53_RS15015 at 3283.662 kb on - strand, within LRK53_RS15015 at 3283.662 kb on - strand, within LRK53_RS15015 at 3283.663 kb on + strand, within LRK53_RS15015 at 3283.663 kb on + strand, within LRK53_RS15015 at 3283.663 kb on + strand, within LRK53_RS15015 at 3283.663 kb on + strand, within LRK53_RS15015 at 3283.664 kb on - strand, within LRK53_RS15015 at 3283.664 kb on - strand, within LRK53_RS15015 at 3283.664 kb on - strand, within LRK53_RS15015 at 3283.664 kb on - strand, within LRK53_RS15015 at 3283.664 kb on - strand, within LRK53_RS15015 at 3283.664 kb on - strand, within LRK53_RS15015 at 3283.721 kb on + strand, within LRK53_RS15015 at 3283.721 kb on + strand, within LRK53_RS15015 at 3283.721 kb on + strand, within LRK53_RS15015 at 3283.722 kb on - strand, within LRK53_RS15015 at 3283.722 kb on - strand, within LRK53_RS15015 at 3284.312 kb on + strand, within LRK53_RS15020 at 3284.312 kb on + strand, within LRK53_RS15020 at 3284.313 kb on - strand, within LRK53_RS15020 at 3284.313 kb on - strand, within LRK53_RS15020 at 3284.313 kb on - strand, within LRK53_RS15020 at 3284.313 kb on - strand, within LRK53_RS15020 at 3284.313 kb on - strand, within LRK53_RS15020 at 3284.734 kb on + strand, within LRK53_RS15025 at 3284.734 kb on + strand, within LRK53_RS15025 at 3284.734 kb on + strand, within LRK53_RS15025 at 3284.734 kb on + strand, within LRK53_RS15025 at 3284.734 kb on + strand, within LRK53_RS15025 at 3284.734 kb on + strand, within LRK53_RS15025 at 3284.734 kb on + strand, within LRK53_RS15025 at 3284.734 kb on + strand, within LRK53_RS15025 at 3284.734 kb on + strand, within LRK53_RS15025 at 3284.734 kb on + strand, within LRK53_RS15025 at 3284.734 kb on + strand, within LRK53_RS15025 at 3284.735 kb on - strand, within LRK53_RS15025 at 3284.735 kb on - strand, within LRK53_RS15025 at 3284.735 kb on - strand, within LRK53_RS15025 at 3284.735 kb on - strand, within LRK53_RS15025 at 3284.735 kb on - strand, within LRK53_RS15025 at 3284.735 kb on - strand, within LRK53_RS15025 at 3284.735 kb on - strand, within LRK53_RS15025 at 3284.735 kb on - strand, within LRK53_RS15025 at 3284.735 kb on - strand, within LRK53_RS15025 at 3284.917 kb on + strand, within LRK53_RS15025 at 3284.917 kb on + strand, within LRK53_RS15025 at 3284.917 kb on + strand, within LRK53_RS15025 at 3284.917 kb on + strand, within LRK53_RS15025 at 3284.917 kb on + strand, within LRK53_RS15025 at 3284.917 kb on + strand, within LRK53_RS15025 at 3284.917 kb on + strand, within LRK53_RS15025 at 3284.918 kb on - strand, within LRK53_RS15025 at 3284.918 kb on - strand, within LRK53_RS15025 at 3284.918 kb on - strand, within LRK53_RS15025 at 3284.918 kb on - strand, within LRK53_RS15025 at 3284.918 kb on - strand, within LRK53_RS15025 at 3284.918 kb on - strand, within LRK53_RS15025 at 3284.918 kb on - strand, within LRK53_RS15025 at 3285.023 kb on + strand at 3285.024 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7 remove 3,282,953 + LRK53_RS15015 0.15 -0.7 3,282,953 + LRK53_RS15015 0.15 -1.5 3,282,953 + LRK53_RS15015 0.15 -1.2 3,282,953 + LRK53_RS15015 0.15 -1.2 3,282,953 + LRK53_RS15015 0.15 +0.2 3,282,953 + LRK53_RS15015 0.15 -1.0 3,282,953 + LRK53_RS15015 0.15 -0.7 3,282,953 + LRK53_RS15015 0.15 -0.1 3,282,953 + LRK53_RS15015 0.15 -1.2 3,282,953 + LRK53_RS15015 0.15 +1.5 3,282,953 + LRK53_RS15015 0.15 -0.3 3,282,953 + LRK53_RS15015 0.15 -1.4 3,282,953 + LRK53_RS15015 0.15 -1.7 3,282,953 + LRK53_RS15015 0.15 -0.9 3,282,953 + LRK53_RS15015 0.15 +0.2 3,282,953 + LRK53_RS15015 0.15 -1.0 3,282,954 - LRK53_RS15015 0.15 +0.3 3,282,954 - LRK53_RS15015 0.15 +1.3 3,282,954 - LRK53_RS15015 0.15 -2.3 3,282,954 - LRK53_RS15015 0.15 -0.6 3,282,954 - LRK53_RS15015 0.15 -1.3 3,282,954 - LRK53_RS15015 0.15 +1.6 3,282,954 - LRK53_RS15015 0.15 +1.1 3,282,954 - LRK53_RS15015 0.15 -1.4 3,282,954 - LRK53_RS15015 0.15 -0.7 3,282,954 - LRK53_RS15015 0.15 +1.7 3,282,954 - LRK53_RS15015 0.15 +0.2 3,282,954 - LRK53_RS15015 0.15 -1.8 3,282,954 - LRK53_RS15015 0.15 +2.0 3,282,954 - LRK53_RS15015 0.15 +1.2 3,282,954 - LRK53_RS15015 0.15 -1.9 3,282,954 - LRK53_RS15015 0.15 -0.3 3,282,954 - LRK53_RS15015 0.15 -0.7 3,282,954 - LRK53_RS15015 0.15 +2.4 3,282,954 - LRK53_RS15015 0.15 -0.7 3,283,201 + LRK53_RS15015 0.37 -0.3 3,283,202 - LRK53_RS15015 0.37 +0.8 3,283,202 - LRK53_RS15015 0.37 -0.4 3,283,202 - LRK53_RS15015 0.37 +0.5 3,283,289 + LRK53_RS15015 0.44 -0.5 3,283,289 + LRK53_RS15015 0.44 -0.2 3,283,289 + LRK53_RS15015 0.44 +1.9 3,283,290 - LRK53_RS15015 0.45 -1.3 3,283,290 - LRK53_RS15015 0.45 -0.3 3,283,290 - LRK53_RS15015 0.45 -0.8 3,283,290 - LRK53_RS15015 0.45 +0.2 3,283,352 - LRK53_RS15015 0.50 +0.9 3,283,352 - LRK53_RS15015 0.50 -0.3 3,283,661 + LRK53_RS15015 0.77 -1.3 3,283,661 + LRK53_RS15015 0.77 -1.6 3,283,661 + LRK53_RS15015 0.77 -0.1 3,283,661 + LRK53_RS15015 0.77 -0.5 3,283,661 + LRK53_RS15015 0.77 +0.5 3,283,661 + LRK53_RS15015 0.77 -1.4 3,283,662 - LRK53_RS15015 0.77 -2.4 3,283,662 - LRK53_RS15015 0.77 -0.3 3,283,662 - LRK53_RS15015 0.77 -0.7 3,283,662 - LRK53_RS15015 0.77 +0.1 3,283,662 - LRK53_RS15015 0.77 -0.7 3,283,662 - LRK53_RS15015 0.77 -2.3 3,283,663 + LRK53_RS15015 0.77 -0.8 3,283,663 + LRK53_RS15015 0.77 -0.7 3,283,663 + LRK53_RS15015 0.77 -1.1 3,283,663 + LRK53_RS15015 0.77 +0.5 3,283,664 - LRK53_RS15015 0.77 +3.2 3,283,664 - LRK53_RS15015 0.77 -0.8 3,283,664 - LRK53_RS15015 0.77 -3.3 3,283,664 - LRK53_RS15015 0.77 +0.9 3,283,664 - LRK53_RS15015 0.77 -1.6 3,283,664 - LRK53_RS15015 0.77 -1.8 3,283,721 + LRK53_RS15015 0.82 -0.9 3,283,721 + LRK53_RS15015 0.82 -0.7 3,283,721 + LRK53_RS15015 0.82 -1.4 3,283,722 - LRK53_RS15015 0.82 -0.6 3,283,722 - LRK53_RS15015 0.82 +0.9 3,284,312 + LRK53_RS15020 0.50 -1.4 3,284,312 + LRK53_RS15020 0.50 -0.8 3,284,313 - LRK53_RS15020 0.50 +0.3 3,284,313 - LRK53_RS15020 0.50 -0.9 3,284,313 - LRK53_RS15020 0.50 +0.0 3,284,313 - LRK53_RS15020 0.50 +0.5 3,284,313 - LRK53_RS15020 0.50 -0.2 3,284,734 + LRK53_RS15025 0.16 +2.1 3,284,734 + LRK53_RS15025 0.16 -0.5 3,284,734 + LRK53_RS15025 0.16 -0.1 3,284,734 + LRK53_RS15025 0.16 -1.2 3,284,734 + LRK53_RS15025 0.16 -0.0 3,284,734 + LRK53_RS15025 0.16 -1.3 3,284,734 + LRK53_RS15025 0.16 -2.5 3,284,734 + LRK53_RS15025 0.16 -1.3 3,284,734 + LRK53_RS15025 0.16 -0.1 3,284,734 + LRK53_RS15025 0.16 +0.6 3,284,734 + LRK53_RS15025 0.16 -2.8 3,284,735 - LRK53_RS15025 0.16 +0.4 3,284,735 - LRK53_RS15025 0.16 +0.3 3,284,735 - LRK53_RS15025 0.16 +1.1 3,284,735 - LRK53_RS15025 0.16 +1.9 3,284,735 - LRK53_RS15025 0.16 -1.4 3,284,735 - LRK53_RS15025 0.16 +2.0 3,284,735 - LRK53_RS15025 0.16 +1.4 3,284,735 - LRK53_RS15025 0.16 +0.9 3,284,735 - LRK53_RS15025 0.16 -0.7 3,284,917 + LRK53_RS15025 0.84 -0.1 3,284,917 + LRK53_RS15025 0.84 -0.0 3,284,917 + LRK53_RS15025 0.84 -1.0 3,284,917 + LRK53_RS15025 0.84 -1.4 3,284,917 + LRK53_RS15025 0.84 -0.3 3,284,917 + LRK53_RS15025 0.84 +0.5 3,284,917 + LRK53_RS15025 0.84 -1.3 3,284,918 - LRK53_RS15025 0.84 -1.1 3,284,918 - LRK53_RS15025 0.84 +0.5 3,284,918 - LRK53_RS15025 0.84 -1.8 3,284,918 - LRK53_RS15025 0.84 -2.0 3,284,918 - LRK53_RS15025 0.84 +0.8 3,284,918 - LRK53_RS15025 0.84 -0.0 3,284,918 - LRK53_RS15025 0.84 -1.0 3,285,023 + -0.7 3,285,024 - -0.3
Or see this region's nucleotide sequence