Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS05385

Experiment: Guanosine 0.35306 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS05375 and A4249_RS05380 are separated by 139 nucleotidesA4249_RS05380 and A4249_RS05385 overlap by 4 nucleotidesA4249_RS05385 and A4249_RS05390 are separated by 25 nucleotidesA4249_RS05390 and A4249_RS05395 overlap by 1 nucleotides A4249_RS05375: A4249_RS05375 - damage-inducible protein, at 1,100,791 to 1,101,546 _RS05375 A4249_RS05380: A4249_RS05380 - hypothetical protein, at 1,101,686 to 1,102,024 _RS05380 A4249_RS05385: A4249_RS05385 - DUF1810 domain-containing protein, at 1,102,021 to 1,102,461 _RS05385 A4249_RS05390: A4249_RS05390 - SOS response-associated peptidase family protein, at 1,102,487 to 1,103,194 _RS05390 A4249_RS05395: A4249_RS05395 - hypothetical protein, at 1,103,194 to 1,103,640 _RS05395 Position (kb) 1102 1103Strain fitness (log2 ratio) -2 -1 0 1 2at 1101.227 kb on + strand, within A4249_RS05375at 1101.227 kb on + strand, within A4249_RS05375at 1101.227 kb on + strand, within A4249_RS05375at 1101.227 kb on + strand, within A4249_RS05375at 1101.227 kb on + strand, within A4249_RS05375at 1101.227 kb on + strand, within A4249_RS05375at 1101.227 kb on + strand, within A4249_RS05375at 1101.227 kb on + strand, within A4249_RS05375at 1101.227 kb on + strand, within A4249_RS05375at 1101.227 kb on + strand, within A4249_RS05375at 1101.227 kb on + strand, within A4249_RS05375at 1101.227 kb on + strand, within A4249_RS05375at 1101.228 kb on - strand, within A4249_RS05375at 1101.228 kb on - strand, within A4249_RS05375at 1101.228 kb on - strand, within A4249_RS05375at 1101.228 kb on - strand, within A4249_RS05375at 1101.228 kb on - strand, within A4249_RS05375at 1101.228 kb on - strand, within A4249_RS05375at 1101.228 kb on - strand, within A4249_RS05375at 1101.228 kb on - strand, within A4249_RS05375at 1101.228 kb on - strand, within A4249_RS05375at 1101.228 kb on - strand, within A4249_RS05375at 1101.248 kb on - strand, within A4249_RS05375at 1101.248 kb on - strand, within A4249_RS05375at 1101.248 kb on - strand, within A4249_RS05375at 1101.248 kb on - strand, within A4249_RS05375at 1101.293 kb on - strand, within A4249_RS05375at 1101.729 kb on - strand, within A4249_RS05380at 1101.729 kb on - strand, within A4249_RS05380at 1101.983 kb on + strand, within A4249_RS05380at 1101.984 kb on - strand, within A4249_RS05380at 1101.984 kb on - strand, within A4249_RS05380at 1101.984 kb on - strand, within A4249_RS05380at 1102.049 kb on + strandat 1102.049 kb on + strandat 1102.050 kb on - strandat 1102.118 kb on + strand, within A4249_RS05385at 1102.118 kb on + strand, within A4249_RS05385at 1102.119 kb on - strand, within A4249_RS05385at 1102.174 kb on + strand, within A4249_RS05385at 1102.174 kb on + strand, within A4249_RS05385at 1102.174 kb on + strand, within A4249_RS05385at 1102.174 kb on + strand, within A4249_RS05385at 1102.175 kb on - strand, within A4249_RS05385at 1102.175 kb on - strand, within A4249_RS05385at 1102.175 kb on - strand, within A4249_RS05385at 1102.175 kb on - strand, within A4249_RS05385at 1102.175 kb on - strand, within A4249_RS05385at 1102.175 kb on - strand, within A4249_RS05385at 1102.175 kb on - strand, within A4249_RS05385at 1102.207 kb on + strand, within A4249_RS05385at 1102.207 kb on + strand, within A4249_RS05385at 1102.207 kb on + strand, within A4249_RS05385at 1102.207 kb on + strand, within A4249_RS05385at 1102.208 kb on - strand, within A4249_RS05385at 1102.208 kb on - strand, within A4249_RS05385at 1102.208 kb on - strand, within A4249_RS05385at 1102.208 kb on - strand, within A4249_RS05385at 1102.208 kb on - strand, within A4249_RS05385at 1102.226 kb on + strand, within A4249_RS05385at 1102.227 kb on - strand, within A4249_RS05385at 1102.227 kb on - strand, within A4249_RS05385at 1102.337 kb on + strand, within A4249_RS05385at 1102.337 kb on + strand, within A4249_RS05385at 1102.338 kb on - strand, within A4249_RS05385at 1102.338 kb on - strand, within A4249_RS05385at 1102.338 kb on - strand, within A4249_RS05385at 1102.338 kb on - strand, within A4249_RS05385at 1102.427 kb on + strandat 1102.427 kb on + strandat 1102.427 kb on + strandat 1102.428 kb on - strandat 1102.428 kb on - strandat 1102.428 kb on - strandat 1102.428 kb on - strandat 1102.428 kb on - strandat 1102.428 kb on - strandat 1102.428 kb on - strandat 1102.460 kb on - strandat 1102.460 kb on - strandat 1102.467 kb on + strandat 1102.479 kb on + strandat 1102.479 kb on + strandat 1102.480 kb on - strandat 1102.480 kb on - strandat 1102.480 kb on - strandat 1102.480 kb on - strandat 1102.488 kb on + strandat 1102.488 kb on + strandat 1102.488 kb on + strandat 1102.499 kb on - strandat 1102.788 kb on + strand, within A4249_RS05390at 1102.789 kb on - strand, within A4249_RS05390at 1102.789 kb on - strand, within A4249_RS05390at 1102.789 kb on - strand, within A4249_RS05390at 1102.789 kb on - strand, within A4249_RS05390at 1102.789 kb on - strand, within A4249_RS05390at 1103.094 kb on + strand, within A4249_RS05390at 1103.094 kb on + strand, within A4249_RS05390at 1103.153 kb on + strandat 1103.153 kb on + strandat 1103.154 kb on - strandat 1103.154 kb on - strandat 1103.154 kb on - strandat 1103.182 kb on - strandat 1103.246 kb on + strand, within A4249_RS05395at 1103.246 kb on + strand, within A4249_RS05395at 1103.246 kb on + strand, within A4249_RS05395at 1103.246 kb on + strand, within A4249_RS05395at 1103.246 kb on + strand, within A4249_RS05395at 1103.246 kb on + strand, within A4249_RS05395at 1103.246 kb on + strand, within A4249_RS05395at 1103.246 kb on + strand, within A4249_RS05395at 1103.247 kb on - strand, within A4249_RS05395at 1103.247 kb on - strand, within A4249_RS05395at 1103.247 kb on - strand, within A4249_RS05395at 1103.247 kb on - strand, within A4249_RS05395at 1103.247 kb on - strand, within A4249_RS05395at 1103.247 kb on - strand, within A4249_RS05395at 1103.437 kb on - strand, within A4249_RS05395

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Per-strain Table

Position Strand Gene LocusTag Fraction Guanosine 0.35306 mM (C)
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1,101,227 + A4249_RS05375 0.58 -0.8
1,101,227 + A4249_RS05375 0.58 +0.5
1,101,227 + A4249_RS05375 0.58 +0.8
1,101,227 + A4249_RS05375 0.58 +0.3
1,101,227 + A4249_RS05375 0.58 +0.0
1,101,227 + A4249_RS05375 0.58 -0.4
1,101,227 + A4249_RS05375 0.58 -0.7
1,101,227 + A4249_RS05375 0.58 +0.4
1,101,227 + A4249_RS05375 0.58 -0.1
1,101,227 + A4249_RS05375 0.58 +0.4
1,101,227 + A4249_RS05375 0.58 +0.0
1,101,227 + A4249_RS05375 0.58 -1.7
1,101,228 - A4249_RS05375 0.58 -0.2
1,101,228 - A4249_RS05375 0.58 +0.2
1,101,228 - A4249_RS05375 0.58 +0.5
1,101,228 - A4249_RS05375 0.58 -1.6
1,101,228 - A4249_RS05375 0.58 -1.6
1,101,228 - A4249_RS05375 0.58 -0.1
1,101,228 - A4249_RS05375 0.58 +0.5
1,101,228 - A4249_RS05375 0.58 +0.8
1,101,228 - A4249_RS05375 0.58 -0.7
1,101,228 - A4249_RS05375 0.58 +0.3
1,101,248 - A4249_RS05375 0.60 +1.0
1,101,248 - A4249_RS05375 0.60 +0.2
1,101,248 - A4249_RS05375 0.60 -0.4
1,101,248 - A4249_RS05375 0.60 +0.0
1,101,293 - A4249_RS05375 0.66 -0.2
1,101,729 - A4249_RS05380 0.13 +0.6
1,101,729 - A4249_RS05380 0.13 -0.1
1,101,983 + A4249_RS05380 0.88 -0.5
1,101,984 - A4249_RS05380 0.88 +0.4
1,101,984 - A4249_RS05380 0.88 -0.4
1,101,984 - A4249_RS05380 0.88 +0.5
1,102,049 + -0.6
1,102,049 + -0.5
1,102,050 - +0.5
1,102,118 + A4249_RS05385 0.22 -2.1
1,102,118 + A4249_RS05385 0.22 -0.4
1,102,119 - A4249_RS05385 0.22 -0.1
1,102,174 + A4249_RS05385 0.35 +0.2
1,102,174 + A4249_RS05385 0.35 +0.8
1,102,174 + A4249_RS05385 0.35 +1.6
1,102,174 + A4249_RS05385 0.35 +0.2
1,102,175 - A4249_RS05385 0.35 +0.1
1,102,175 - A4249_RS05385 0.35 -1.5
1,102,175 - A4249_RS05385 0.35 -0.6
1,102,175 - A4249_RS05385 0.35 -1.2
1,102,175 - A4249_RS05385 0.35 -2.6
1,102,175 - A4249_RS05385 0.35 +0.1
1,102,175 - A4249_RS05385 0.35 +0.3
1,102,207 + A4249_RS05385 0.42 +0.2
1,102,207 + A4249_RS05385 0.42 -0.9
1,102,207 + A4249_RS05385 0.42 -0.5
1,102,207 + A4249_RS05385 0.42 +0.7
1,102,208 - A4249_RS05385 0.42 +0.3
1,102,208 - A4249_RS05385 0.42 +0.9
1,102,208 - A4249_RS05385 0.42 -0.2
1,102,208 - A4249_RS05385 0.42 -0.5
1,102,208 - A4249_RS05385 0.42 +1.0
1,102,226 + A4249_RS05385 0.46 -0.5
1,102,227 - A4249_RS05385 0.47 -0.4
1,102,227 - A4249_RS05385 0.47 +0.6
1,102,337 + A4249_RS05385 0.72 -2.1
1,102,337 + A4249_RS05385 0.72 -0.2
1,102,338 - A4249_RS05385 0.72 -0.4
1,102,338 - A4249_RS05385 0.72 +0.0
1,102,338 - A4249_RS05385 0.72 -0.7
1,102,338 - A4249_RS05385 0.72 +0.1
1,102,427 + -1.4
1,102,427 + -0.2
1,102,427 + +0.4
1,102,428 - -0.8
1,102,428 - +0.4
1,102,428 - +0.8
1,102,428 - +1.0
1,102,428 - +1.2
1,102,428 - -2.0
1,102,428 - -0.2
1,102,460 - -0.0
1,102,460 - -0.0
1,102,467 + +0.4
1,102,479 + +0.5
1,102,479 + -0.9
1,102,480 - -0.8
1,102,480 - -0.5
1,102,480 - -0.5
1,102,480 - -1.1
1,102,488 + -1.1
1,102,488 + +1.0
1,102,488 + -0.2
1,102,499 - +0.2
1,102,788 + A4249_RS05390 0.43 +0.2
1,102,789 - A4249_RS05390 0.43 +2.2
1,102,789 - A4249_RS05390 0.43 -1.0
1,102,789 - A4249_RS05390 0.43 -0.2
1,102,789 - A4249_RS05390 0.43 -0.9
1,102,789 - A4249_RS05390 0.43 +0.2
1,103,094 + A4249_RS05390 0.86 +0.3
1,103,094 + A4249_RS05390 0.86 -0.3
1,103,153 + +0.0
1,103,153 + -0.6
1,103,154 - -0.9
1,103,154 - -0.3
1,103,154 - +0.7
1,103,182 - +0.0
1,103,246 + A4249_RS05395 0.12 -0.6
1,103,246 + A4249_RS05395 0.12 -0.5
1,103,246 + A4249_RS05395 0.12 +0.3
1,103,246 + A4249_RS05395 0.12 +0.2
1,103,246 + A4249_RS05395 0.12 -0.3
1,103,246 + A4249_RS05395 0.12 +1.1
1,103,246 + A4249_RS05395 0.12 +0.3
1,103,246 + A4249_RS05395 0.12 -0.5
1,103,247 - A4249_RS05395 0.12 +0.1
1,103,247 - A4249_RS05395 0.12 -0.2
1,103,247 - A4249_RS05395 0.12 +0.8
1,103,247 - A4249_RS05395 0.12 -0.0
1,103,247 - A4249_RS05395 0.12 -0.4
1,103,247 - A4249_RS05395 0.12 +0.9
1,103,437 - A4249_RS05395 0.54 +0.1

Or see this region's nucleotide sequence