Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS02720

Experiment: Biofilm; Day2; SGW; pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS02715 and LRK53_RS02720 are separated by 13 nucleotidesLRK53_RS02720 and LRK53_RS02725 are separated by 80 nucleotides LRK53_RS02715: LRK53_RS02715 - methyltransferase domain-containing protein, at 625,630 to 626,535 _RS02715 LRK53_RS02720: LRK53_RS02720 - pseudouridine synthase, at 626,549 to 627,082 _RS02720 LRK53_RS02725: LRK53_RS02725 - TatD family hydrolase, at 627,163 to 627,960 _RS02725 Position (kb) 626 627 628Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 625.560 kb on + strandat 625.560 kb on + strandat 625.560 kb on + strandat 625.561 kb on - strandat 625.561 kb on - strandat 625.561 kb on - strandat 625.616 kb on + strandat 625.616 kb on + strandat 625.616 kb on + strandat 625.617 kb on - strandat 625.617 kb on - strandat 625.930 kb on + strand, within LRK53_RS02715at 625.930 kb on + strand, within LRK53_RS02715at 625.931 kb on - strand, within LRK53_RS02715at 625.931 kb on - strand, within LRK53_RS02715at 625.931 kb on - strand, within LRK53_RS02715at 625.931 kb on - strand, within LRK53_RS02715at 625.972 kb on + strand, within LRK53_RS02715at 625.972 kb on + strand, within LRK53_RS02715at 625.972 kb on + strand, within LRK53_RS02715at 625.972 kb on + strand, within LRK53_RS02715at 625.972 kb on + strand, within LRK53_RS02715at 625.972 kb on + strand, within LRK53_RS02715at 625.972 kb on + strand, within LRK53_RS02715at 625.972 kb on + strand, within LRK53_RS02715at 625.973 kb on - strand, within LRK53_RS02715at 625.973 kb on - strand, within LRK53_RS02715at 625.973 kb on - strand, within LRK53_RS02715at 625.973 kb on - strand, within LRK53_RS02715at 625.973 kb on - strand, within LRK53_RS02715at 625.973 kb on - strand, within LRK53_RS02715at 625.973 kb on - strand, within LRK53_RS02715at 625.973 kb on - strand, within LRK53_RS02715at 625.973 kb on - strand, within LRK53_RS02715at 625.973 kb on - strand, within LRK53_RS02715at 625.973 kb on - strand, within LRK53_RS02715at 626.206 kb on + strand, within LRK53_RS02715at 626.206 kb on + strand, within LRK53_RS02715at 626.206 kb on + strand, within LRK53_RS02715at 626.206 kb on + strand, within LRK53_RS02715at 626.206 kb on + strand, within LRK53_RS02715at 626.206 kb on + strand, within LRK53_RS02715at 626.206 kb on + strand, within LRK53_RS02715at 626.207 kb on - strand, within LRK53_RS02715at 626.207 kb on - strand, within LRK53_RS02715at 626.207 kb on - strand, within LRK53_RS02715at 626.207 kb on - strand, within LRK53_RS02715at 626.207 kb on - strand, within LRK53_RS02715at 626.296 kb on + strand, within LRK53_RS02715at 626.296 kb on + strand, within LRK53_RS02715at 626.296 kb on + strand, within LRK53_RS02715at 626.297 kb on - strand, within LRK53_RS02715at 626.311 kb on + strand, within LRK53_RS02715at 626.312 kb on - strand, within LRK53_RS02715at 626.312 kb on - strand, within LRK53_RS02715at 626.458 kb on + strandat 626.459 kb on - strandat 626.459 kb on - strandat 626.459 kb on - strandat 626.459 kb on - strandat 626.459 kb on - strandat 626.574 kb on - strandat 626.648 kb on + strand, within LRK53_RS02720at 626.648 kb on + strand, within LRK53_RS02720at 626.648 kb on + strand, within LRK53_RS02720at 626.648 kb on + strand, within LRK53_RS02720at 626.648 kb on + strand, within LRK53_RS02720at 626.648 kb on + strand, within LRK53_RS02720at 626.648 kb on + strand, within LRK53_RS02720at 626.648 kb on + strand, within LRK53_RS02720at 626.648 kb on + strand, within LRK53_RS02720at 626.649 kb on - strand, within LRK53_RS02720at 626.649 kb on - strand, within LRK53_RS02720at 626.649 kb on - strand, within LRK53_RS02720at 626.649 kb on - strand, within LRK53_RS02720at 626.649 kb on - strand, within LRK53_RS02720at 626.649 kb on - strand, within LRK53_RS02720at 626.756 kb on + strand, within LRK53_RS02720at 626.756 kb on + strand, within LRK53_RS02720at 626.756 kb on + strand, within LRK53_RS02720at 626.756 kb on + strand, within LRK53_RS02720at 626.757 kb on - strand, within LRK53_RS02720at 626.757 kb on - strand, within LRK53_RS02720at 626.757 kb on - strand, within LRK53_RS02720at 626.757 kb on - strand, within LRK53_RS02720at 626.757 kb on - strand, within LRK53_RS02720at 626.757 kb on - strand, within LRK53_RS02720at 626.757 kb on - strand, within LRK53_RS02720at 626.805 kb on + strand, within LRK53_RS02720at 626.806 kb on - strand, within LRK53_RS02720at 626.806 kb on - strand, within LRK53_RS02720at 626.806 kb on - strand, within LRK53_RS02720at 627.035 kb on + strandat 627.036 kb on - strandat 627.036 kb on - strandat 627.080 kb on + strandat 627.080 kb on + strandat 627.080 kb on + strandat 627.080 kb on + strandat 627.081 kb on - strandat 627.081 kb on - strandat 627.081 kb on - strandat 627.081 kb on - strandat 627.165 kb on - strandat 627.278 kb on + strand, within LRK53_RS02725at 627.278 kb on + strand, within LRK53_RS02725at 627.278 kb on + strand, within LRK53_RS02725at 627.278 kb on + strand, within LRK53_RS02725at 627.278 kb on + strand, within LRK53_RS02725at 627.278 kb on + strand, within LRK53_RS02725at 627.278 kb on + strand, within LRK53_RS02725at 627.278 kb on + strand, within LRK53_RS02725at 627.279 kb on - strand, within LRK53_RS02725at 627.279 kb on - strand, within LRK53_RS02725at 627.279 kb on - strand, within LRK53_RS02725at 627.279 kb on - strand, within LRK53_RS02725at 627.279 kb on - strand, within LRK53_RS02725at 627.279 kb on - strand, within LRK53_RS02725at 627.279 kb on - strand, within LRK53_RS02725at 627.321 kb on + strand, within LRK53_RS02725at 627.336 kb on - strand, within LRK53_RS02725at 627.461 kb on + strand, within LRK53_RS02725at 627.462 kb on - strand, within LRK53_RS02725at 627.625 kb on + strand, within LRK53_RS02725at 627.626 kb on - strand, within LRK53_RS02725at 627.626 kb on - strand, within LRK53_RS02725at 627.653 kb on + strand, within LRK53_RS02725at 627.653 kb on + strand, within LRK53_RS02725at 627.653 kb on + strand, within LRK53_RS02725at 627.653 kb on + strand, within LRK53_RS02725at 627.654 kb on - strand, within LRK53_RS02725at 627.654 kb on - strand, within LRK53_RS02725at 627.654 kb on - strand, within LRK53_RS02725at 627.654 kb on - strand, within LRK53_RS02725at 627.665 kb on + strand, within LRK53_RS02725at 627.665 kb on + strand, within LRK53_RS02725at 627.665 kb on + strand, within LRK53_RS02725at 627.666 kb on - strand, within LRK53_RS02725at 627.666 kb on - strand, within LRK53_RS02725at 627.746 kb on + strand, within LRK53_RS02725at 627.746 kb on + strand, within LRK53_RS02725at 627.930 kb on + strandat 627.930 kb on + strandat 627.930 kb on + strandat 627.931 kb on - strandat 627.931 kb on - strandat 627.931 kb on - strandat 627.931 kb on - strandat 627.931 kb on - strandat 627.931 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7
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625,560 + -0.3
625,560 + +1.2
625,560 + +1.1
625,561 - +0.2
625,561 - -1.4
625,561 - -1.7
625,616 + -1.9
625,616 + -2.7
625,616 + +2.0
625,617 - +0.3
625,617 - +1.3
625,930 + LRK53_RS02715 0.33 -0.5
625,930 + LRK53_RS02715 0.33 -0.1
625,931 - LRK53_RS02715 0.33 -0.5
625,931 - LRK53_RS02715 0.33 +1.0
625,931 - LRK53_RS02715 0.33 -0.4
625,931 - LRK53_RS02715 0.33 -1.0
625,972 + LRK53_RS02715 0.38 -0.8
625,972 + LRK53_RS02715 0.38 +2.1
625,972 + LRK53_RS02715 0.38 -0.2
625,972 + LRK53_RS02715 0.38 -1.0
625,972 + LRK53_RS02715 0.38 +0.4
625,972 + LRK53_RS02715 0.38 -0.3
625,972 + LRK53_RS02715 0.38 -2.9
625,972 + LRK53_RS02715 0.38 -1.6
625,973 - LRK53_RS02715 0.38 -1.6
625,973 - LRK53_RS02715 0.38 -2.0
625,973 - LRK53_RS02715 0.38 -1.6
625,973 - LRK53_RS02715 0.38 +0.3
625,973 - LRK53_RS02715 0.38 +0.8
625,973 - LRK53_RS02715 0.38 -1.1
625,973 - LRK53_RS02715 0.38 -2.0
625,973 - LRK53_RS02715 0.38 -1.7
625,973 - LRK53_RS02715 0.38 -0.9
625,973 - LRK53_RS02715 0.38 -0.4
625,973 - LRK53_RS02715 0.38 -0.7
626,206 + LRK53_RS02715 0.64 -0.3
626,206 + LRK53_RS02715 0.64 -1.7
626,206 + LRK53_RS02715 0.64 -1.8
626,206 + LRK53_RS02715 0.64 -1.2
626,206 + LRK53_RS02715 0.64 -0.4
626,206 + LRK53_RS02715 0.64 -0.6
626,206 + LRK53_RS02715 0.64 -0.0
626,207 - LRK53_RS02715 0.64 -2.0
626,207 - LRK53_RS02715 0.64 -0.2
626,207 - LRK53_RS02715 0.64 -0.5
626,207 - LRK53_RS02715 0.64 -0.6
626,207 - LRK53_RS02715 0.64 -1.6
626,296 + LRK53_RS02715 0.74 +0.2
626,296 + LRK53_RS02715 0.74 -1.3
626,296 + LRK53_RS02715 0.74 -1.0
626,297 - LRK53_RS02715 0.74 +0.2
626,311 + LRK53_RS02715 0.75 +1.4
626,312 - LRK53_RS02715 0.75 +0.6
626,312 - LRK53_RS02715 0.75 -0.2
626,458 + -0.6
626,459 - -0.2
626,459 - -0.8
626,459 - -1.3
626,459 - -0.4
626,459 - -1.8
626,574 - -0.2
626,648 + LRK53_RS02720 0.19 -0.5
626,648 + LRK53_RS02720 0.19 -0.3
626,648 + LRK53_RS02720 0.19 -1.3
626,648 + LRK53_RS02720 0.19 -3.4
626,648 + LRK53_RS02720 0.19 -0.8
626,648 + LRK53_RS02720 0.19 +0.2
626,648 + LRK53_RS02720 0.19 -0.5
626,648 + LRK53_RS02720 0.19 -1.8
626,648 + LRK53_RS02720 0.19 +0.5
626,649 - LRK53_RS02720 0.19 +0.7
626,649 - LRK53_RS02720 0.19 -1.2
626,649 - LRK53_RS02720 0.19 -0.8
626,649 - LRK53_RS02720 0.19 -1.2
626,649 - LRK53_RS02720 0.19 -0.4
626,649 - LRK53_RS02720 0.19 -0.5
626,756 + LRK53_RS02720 0.39 -1.3
626,756 + LRK53_RS02720 0.39 -1.0
626,756 + LRK53_RS02720 0.39 -1.7
626,756 + LRK53_RS02720 0.39 -0.8
626,757 - LRK53_RS02720 0.39 -2.1
626,757 - LRK53_RS02720 0.39 -1.5
626,757 - LRK53_RS02720 0.39 -0.9
626,757 - LRK53_RS02720 0.39 -0.7
626,757 - LRK53_RS02720 0.39 +0.8
626,757 - LRK53_RS02720 0.39 -0.9
626,757 - LRK53_RS02720 0.39 -0.6
626,805 + LRK53_RS02720 0.48 -1.3
626,806 - LRK53_RS02720 0.48 -2.2
626,806 - LRK53_RS02720 0.48 -0.6
626,806 - LRK53_RS02720 0.48 -0.9
627,035 + +0.2
627,036 - +1.3
627,036 - -1.6
627,080 + -0.1
627,080 + -0.0
627,080 + -0.0
627,080 + -0.1
627,081 - -1.7
627,081 - -0.0
627,081 - +1.8
627,081 - -0.0
627,165 - -1.1
627,278 + LRK53_RS02725 0.14 -0.7
627,278 + LRK53_RS02725 0.14 -0.4
627,278 + LRK53_RS02725 0.14 +2.2
627,278 + LRK53_RS02725 0.14 -0.7
627,278 + LRK53_RS02725 0.14 -1.4
627,278 + LRK53_RS02725 0.14 -0.3
627,278 + LRK53_RS02725 0.14 -1.2
627,278 + LRK53_RS02725 0.14 -1.0
627,279 - LRK53_RS02725 0.15 -0.2
627,279 - LRK53_RS02725 0.15 -1.8
627,279 - LRK53_RS02725 0.15 -0.6
627,279 - LRK53_RS02725 0.15 -0.7
627,279 - LRK53_RS02725 0.15 +0.2
627,279 - LRK53_RS02725 0.15 -0.5
627,279 - LRK53_RS02725 0.15 +0.6
627,321 + LRK53_RS02725 0.20 -1.3
627,336 - LRK53_RS02725 0.22 +1.8
627,461 + LRK53_RS02725 0.37 -0.0
627,462 - LRK53_RS02725 0.37 -1.2
627,625 + LRK53_RS02725 0.58 +0.5
627,626 - LRK53_RS02725 0.58 -0.8
627,626 - LRK53_RS02725 0.58 -0.9
627,653 + LRK53_RS02725 0.61 -1.0
627,653 + LRK53_RS02725 0.61 +1.4
627,653 + LRK53_RS02725 0.61 -1.1
627,653 + LRK53_RS02725 0.61 +1.1
627,654 - LRK53_RS02725 0.62 -2.7
627,654 - LRK53_RS02725 0.62 -1.4
627,654 - LRK53_RS02725 0.62 -0.2
627,654 - LRK53_RS02725 0.62 -0.4
627,665 + LRK53_RS02725 0.63 -0.1
627,665 + LRK53_RS02725 0.63 -0.4
627,665 + LRK53_RS02725 0.63 -0.2
627,666 - LRK53_RS02725 0.63 +0.6
627,666 - LRK53_RS02725 0.63 -1.0
627,746 + LRK53_RS02725 0.73 +1.0
627,746 + LRK53_RS02725 0.73 -1.8
627,930 + -1.1
627,930 + -0.0
627,930 + -0.6
627,931 - +1.0
627,931 - -0.8
627,931 - -0.7
627,931 - -0.8
627,931 - -0.7
627,931 - -0.5

Or see this region's nucleotide sequence