Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS06865

Experiment: Cytosine 0.9 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS16905 and A4249_RS06855 overlap by 40 nucleotidesA4249_RS06855 and A4249_RS06860 overlap by 4 nucleotidesA4249_RS06860 and A4249_RS06865 are separated by 119 nucleotidesA4249_RS06865 and A4249_RS06870 overlap by 47 nucleotidesA4249_RS06870 and A4249_RS16540 are separated by 23 nucleotidesA4249_RS16540 and A4249_RS06875 are separated by 3 nucleotides A4249_RS16905: A4249_RS16905 - DnaB-like helicase C-terminal domain-containing protein, at 1,396,206 to 1,396,346 _RS16905 A4249_RS06855: A4249_RS06855 - hypothetical protein, at 1,396,307 to 1,396,606 _RS06855 A4249_RS06860: A4249_RS06860 - DUF5131 family protein, at 1,396,603 to 1,396,983 _RS06860 A4249_RS06865: A4249_RS06865 - hypothetical protein, at 1,397,103 to 1,397,444 _RS06865 A4249_RS06870: A4249_RS06870 - hypothetical protein, at 1,397,398 to 1,397,994 _RS06870 A4249_RS16540: A4249_RS16540 - hypothetical protein, at 1,398,018 to 1,398,158 _RS16540 A4249_RS06875: A4249_RS06875 - hypothetical protein, at 1,398,162 to 1,398,521 _RS06875 Position (kb) 1397 1398Strain fitness (log2 ratio) -2 -1 0 1 2at 1396.165 kb on - strandat 1396.218 kb on + strandat 1396.219 kb on - strandat 1396.295 kb on - strand, within A4249_RS16905at 1396.346 kb on + strandat 1396.347 kb on - strand, within A4249_RS06855at 1396.442 kb on + strand, within A4249_RS06855at 1396.442 kb on + strand, within A4249_RS06855at 1396.442 kb on + strand, within A4249_RS06855at 1396.443 kb on - strand, within A4249_RS06855at 1396.443 kb on - strand, within A4249_RS06855at 1396.503 kb on + strand, within A4249_RS06855at 1396.512 kb on + strand, within A4249_RS06855at 1396.512 kb on + strand, within A4249_RS06855at 1396.512 kb on + strand, within A4249_RS06855at 1396.512 kb on + strand, within A4249_RS06855at 1396.513 kb on - strand, within A4249_RS06855at 1396.513 kb on - strand, within A4249_RS06855at 1396.513 kb on - strand, within A4249_RS06855at 1396.513 kb on - strand, within A4249_RS06855at 1396.544 kb on + strand, within A4249_RS06855at 1396.682 kb on + strand, within A4249_RS06860at 1396.682 kb on + strand, within A4249_RS06860at 1396.682 kb on + strand, within A4249_RS06860at 1396.682 kb on + strand, within A4249_RS06860at 1396.682 kb on + strand, within A4249_RS06860at 1396.682 kb on + strand, within A4249_RS06860at 1396.683 kb on - strand, within A4249_RS06860at 1396.683 kb on - strand, within A4249_RS06860at 1396.683 kb on - strand, within A4249_RS06860at 1396.683 kb on - strand, within A4249_RS06860at 1396.683 kb on - strand, within A4249_RS06860at 1396.683 kb on - strand, within A4249_RS06860at 1396.683 kb on - strand, within A4249_RS06860at 1396.713 kb on + strand, within A4249_RS06860at 1396.714 kb on - strand, within A4249_RS06860at 1396.746 kb on + strand, within A4249_RS06860at 1396.747 kb on - strand, within A4249_RS06860at 1396.964 kb on + strandat 1396.964 kb on + strandat 1396.964 kb on + strandat 1396.964 kb on + strandat 1396.964 kb on + strandat 1396.964 kb on + strandat 1396.965 kb on - strandat 1396.965 kb on - strandat 1396.965 kb on - strandat 1396.965 kb on - strandat 1396.965 kb on - strandat 1396.986 kb on + strandat 1396.986 kb on + strandat 1396.986 kb on + strandat 1397.101 kb on + strandat 1397.101 kb on + strandat 1397.102 kb on - strandat 1397.102 kb on - strandat 1397.136 kb on + strandat 1397.136 kb on + strandat 1397.136 kb on + strandat 1397.136 kb on + strandat 1397.136 kb on + strandat 1397.136 kb on + strandat 1397.136 kb on + strandat 1397.136 kb on + strandat 1397.136 kb on + strandat 1397.136 kb on + strandat 1397.136 kb on + strandat 1397.136 kb on + strandat 1397.136 kb on + strandat 1397.136 kb on + strandat 1397.137 kb on - strandat 1397.137 kb on - strandat 1397.137 kb on - strandat 1397.137 kb on - strandat 1397.137 kb on - strandat 1397.137 kb on - strandat 1397.137 kb on - strandat 1397.137 kb on - strandat 1397.137 kb on - strandat 1397.137 kb on - strandat 1397.138 kb on + strand, within A4249_RS06865at 1397.138 kb on + strand, within A4249_RS06865at 1397.139 kb on - strand, within A4249_RS06865at 1397.214 kb on + strand, within A4249_RS06865at 1397.214 kb on + strand, within A4249_RS06865at 1397.214 kb on + strand, within A4249_RS06865at 1397.214 kb on + strand, within A4249_RS06865at 1397.214 kb on + strand, within A4249_RS06865at 1397.215 kb on - strand, within A4249_RS06865at 1397.215 kb on - strand, within A4249_RS06865at 1397.215 kb on - strand, within A4249_RS06865at 1397.358 kb on + strand, within A4249_RS06865at 1397.359 kb on - strand, within A4249_RS06865at 1397.671 kb on + strand, within A4249_RS06870at 1397.672 kb on - strand, within A4249_RS06870at 1397.788 kb on + strand, within A4249_RS06870at 1397.788 kb on + strand, within A4249_RS06870at 1397.789 kb on - strand, within A4249_RS06870at 1397.789 kb on - strand, within A4249_RS06870at 1397.789 kb on - strand, within A4249_RS06870at 1397.789 kb on - strand, within A4249_RS06870at 1397.851 kb on + strand, within A4249_RS06870at 1397.852 kb on - strand, within A4249_RS06870at 1397.852 kb on - strand, within A4249_RS06870at 1397.852 kb on - strand, within A4249_RS06870at 1397.930 kb on + strand, within A4249_RS06870at 1397.962 kb on + strandat 1397.962 kb on + strandat 1397.963 kb on - strandat 1397.963 kb on - strandat 1397.992 kb on + strandat 1397.992 kb on + strandat 1397.993 kb on - strandat 1398.109 kb on + strand, within A4249_RS16540at 1398.109 kb on + strand, within A4249_RS16540at 1398.109 kb on + strand, within A4249_RS16540at 1398.109 kb on + strand, within A4249_RS16540at 1398.109 kb on + strand, within A4249_RS16540at 1398.109 kb on + strand, within A4249_RS16540at 1398.110 kb on - strand, within A4249_RS16540at 1398.110 kb on - strand, within A4249_RS16540at 1398.110 kb on - strand, within A4249_RS16540at 1398.110 kb on - strand, within A4249_RS16540at 1398.110 kb on - strand, within A4249_RS16540at 1398.110 kb on - strand, within A4249_RS16540at 1398.110 kb on - strand, within A4249_RS16540at 1398.193 kb on + strandat 1398.193 kb on + strandat 1398.193 kb on + strandat 1398.193 kb on + strandat 1398.193 kb on + strandat 1398.193 kb on + strandat 1398.193 kb on + strandat 1398.193 kb on + strandat 1398.194 kb on - strandat 1398.194 kb on - strandat 1398.194 kb on - strandat 1398.194 kb on - strandat 1398.194 kb on - strandat 1398.410 kb on + strand, within A4249_RS06875at 1398.410 kb on + strand, within A4249_RS06875at 1398.410 kb on + strand, within A4249_RS06875at 1398.410 kb on + strand, within A4249_RS06875at 1398.410 kb on + strand, within A4249_RS06875at 1398.411 kb on - strand, within A4249_RS06875at 1398.411 kb on - strand, within A4249_RS06875at 1398.411 kb on - strand, within A4249_RS06875at 1398.411 kb on - strand, within A4249_RS06875at 1398.411 kb on - strand, within A4249_RS06875at 1398.411 kb on - strand, within A4249_RS06875at 1398.411 kb on - strand, within A4249_RS06875at 1398.411 kb on - strand, within A4249_RS06875at 1398.411 kb on - strand, within A4249_RS06875at 1398.411 kb on - strand, within A4249_RS06875

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytosine 0.9 mM (C)
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1,396,165 - -0.3
1,396,218 + -1.2
1,396,219 - +0.9
1,396,295 - A4249_RS16905 0.63 +0.5
1,396,346 + -0.1
1,396,347 - A4249_RS06855 0.13 -0.5
1,396,442 + A4249_RS06855 0.45 -0.7
1,396,442 + A4249_RS06855 0.45 +1.2
1,396,442 + A4249_RS06855 0.45 +0.0
1,396,443 - A4249_RS06855 0.45 +0.4
1,396,443 - A4249_RS06855 0.45 -1.7
1,396,503 + A4249_RS06855 0.65 -0.6
1,396,512 + A4249_RS06855 0.68 +0.4
1,396,512 + A4249_RS06855 0.68 +1.0
1,396,512 + A4249_RS06855 0.68 +0.6
1,396,512 + A4249_RS06855 0.68 +2.2
1,396,513 - A4249_RS06855 0.69 -0.1
1,396,513 - A4249_RS06855 0.69 -0.1
1,396,513 - A4249_RS06855 0.69 -0.2
1,396,513 - A4249_RS06855 0.69 -0.9
1,396,544 + A4249_RS06855 0.79 +0.1
1,396,682 + A4249_RS06860 0.21 +0.0
1,396,682 + A4249_RS06860 0.21 -0.1
1,396,682 + A4249_RS06860 0.21 +0.1
1,396,682 + A4249_RS06860 0.21 -0.2
1,396,682 + A4249_RS06860 0.21 +0.1
1,396,682 + A4249_RS06860 0.21 -0.6
1,396,683 - A4249_RS06860 0.21 +0.1
1,396,683 - A4249_RS06860 0.21 -0.2
1,396,683 - A4249_RS06860 0.21 +0.0
1,396,683 - A4249_RS06860 0.21 -0.0
1,396,683 - A4249_RS06860 0.21 -1.6
1,396,683 - A4249_RS06860 0.21 +0.3
1,396,683 - A4249_RS06860 0.21 -0.8
1,396,713 + A4249_RS06860 0.29 +0.1
1,396,714 - A4249_RS06860 0.29 -1.7
1,396,746 + A4249_RS06860 0.38 +1.2
1,396,747 - A4249_RS06860 0.38 -0.3
1,396,964 + +0.2
1,396,964 + +0.2
1,396,964 + +0.2
1,396,964 + +0.3
1,396,964 + +0.0
1,396,964 + +0.0
1,396,965 - +0.1
1,396,965 - +0.5
1,396,965 - +0.0
1,396,965 - +0.3
1,396,965 - -2.0
1,396,986 + -0.2
1,396,986 + -0.0
1,396,986 + +0.7
1,397,101 + -0.0
1,397,101 + -0.3
1,397,102 - -0.2
1,397,102 - -0.8
1,397,136 + +0.4
1,397,136 + +0.9
1,397,136 + +0.1
1,397,136 + -0.0
1,397,136 + -0.3
1,397,136 + -0.6
1,397,136 + +0.2
1,397,136 + -0.3
1,397,136 + -0.1
1,397,136 + -0.4
1,397,136 + +0.1
1,397,136 + +0.9
1,397,136 + +0.4
1,397,136 + +0.3
1,397,137 - +0.2
1,397,137 - -0.8
1,397,137 - -0.6
1,397,137 - -0.6
1,397,137 - +0.2
1,397,137 - -0.1
1,397,137 - -0.9
1,397,137 - -1.2
1,397,137 - -0.8
1,397,137 - +0.2
1,397,138 + A4249_RS06865 0.10 -0.3
1,397,138 + A4249_RS06865 0.10 -0.8
1,397,139 - A4249_RS06865 0.11 -0.9
1,397,214 + A4249_RS06865 0.32 +0.7
1,397,214 + A4249_RS06865 0.32 -0.4
1,397,214 + A4249_RS06865 0.32 +1.0
1,397,214 + A4249_RS06865 0.32 -0.2
1,397,214 + A4249_RS06865 0.32 +0.0
1,397,215 - A4249_RS06865 0.33 -0.0
1,397,215 - A4249_RS06865 0.33 -1.7
1,397,215 - A4249_RS06865 0.33 -0.0
1,397,358 + A4249_RS06865 0.75 -0.1
1,397,359 - A4249_RS06865 0.75 -0.9
1,397,671 + A4249_RS06870 0.46 -0.9
1,397,672 - A4249_RS06870 0.46 -0.4
1,397,788 + A4249_RS06870 0.65 -0.6
1,397,788 + A4249_RS06870 0.65 +0.5
1,397,789 - A4249_RS06870 0.65 -0.2
1,397,789 - A4249_RS06870 0.65 +1.0
1,397,789 - A4249_RS06870 0.65 -0.3
1,397,789 - A4249_RS06870 0.65 +0.2
1,397,851 + A4249_RS06870 0.76 -0.2
1,397,852 - A4249_RS06870 0.76 -0.0
1,397,852 - A4249_RS06870 0.76 -0.6
1,397,852 - A4249_RS06870 0.76 -0.1
1,397,930 + A4249_RS06870 0.89 +0.5
1,397,962 + +0.4
1,397,962 + -0.8
1,397,963 - -0.1
1,397,963 - +1.0
1,397,992 + -0.3
1,397,992 + -0.1
1,397,993 - +0.3
1,398,109 + A4249_RS16540 0.65 -0.5
1,398,109 + A4249_RS16540 0.65 -1.2
1,398,109 + A4249_RS16540 0.65 -1.9
1,398,109 + A4249_RS16540 0.65 +0.6
1,398,109 + A4249_RS16540 0.65 +0.7
1,398,109 + A4249_RS16540 0.65 +0.2
1,398,110 - A4249_RS16540 0.65 +0.8
1,398,110 - A4249_RS16540 0.65 +0.6
1,398,110 - A4249_RS16540 0.65 -0.7
1,398,110 - A4249_RS16540 0.65 -0.5
1,398,110 - A4249_RS16540 0.65 -0.3
1,398,110 - A4249_RS16540 0.65 +0.9
1,398,110 - A4249_RS16540 0.65 -0.1
1,398,193 + -0.3
1,398,193 + +0.2
1,398,193 + +1.2
1,398,193 + -0.5
1,398,193 + -0.4
1,398,193 + +0.7
1,398,193 + +0.2
1,398,193 + +0.2
1,398,194 - -0.1
1,398,194 - -0.1
1,398,194 - -0.2
1,398,194 - +0.2
1,398,194 - -0.6
1,398,410 + A4249_RS06875 0.69 -0.4
1,398,410 + A4249_RS06875 0.69 -0.7
1,398,410 + A4249_RS06875 0.69 -0.7
1,398,410 + A4249_RS06875 0.69 +0.3
1,398,410 + A4249_RS06875 0.69 -0.0
1,398,411 - A4249_RS06875 0.69 +0.2
1,398,411 - A4249_RS06875 0.69 -0.2
1,398,411 - A4249_RS06875 0.69 -0.7
1,398,411 - A4249_RS06875 0.69 +0.5
1,398,411 - A4249_RS06875 0.69 +0.3
1,398,411 - A4249_RS06875 0.69 -0.1
1,398,411 - A4249_RS06875 0.69 +0.1
1,398,411 - A4249_RS06875 0.69 +0.4
1,398,411 - A4249_RS06875 0.69 -0.2
1,398,411 - A4249_RS06875 0.69 -0.8

Or see this region's nucleotide sequence