Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NIAGMN_24425 and NIAGMN_24430 are separated by 237 nucleotides NIAGMN_24430 and ydaS are separated by 124 nucleotides ydaS and NIAGMN_24440 overlap by 17 nucleotides NIAGMN_24440 and eCs1768 are separated by 68 nucleotides
NIAGMN_24425: NIAGMN_24425 - DUF1391 domain-containing protein, at 4,777,944 to 4,778,174
_24425
NIAGMN_24430: NIAGMN_24430 - Prophage repressor RacR, at 4,778,412 to 4,778,888
_24430
NIAGMN_24435: ydaS - transcriptional regulator, at 4,779,013 to 4,779,336
ydaS
NIAGMN_24440: NIAGMN_24440 - Rha family transcriptional regulator, at 4,779,320 to 4,779,745
_24440
NIAGMN_24445: eCs1768 - phage replisome organizer, at 4,779,814 to 4,780,851
eCs1768
Position (kb) 4779
4780 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4778.091 kb on - strand, within NIAGMN_24425 at 4778.232 kb on - strand at 4778.232 kb on - strand at 4779.028 kb on + strand at 4779.223 kb on + strand, within ydaS at 4779.227 kb on + strand, within ydaS at 4780.308 kb on + strand, within eCs1768
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 4,778,091 - NIAGMN_24425 0.64 -2.1 4,778,232 - +1.6 4,778,232 - +1.9 4,779,028 + +1.3 4,779,223 + ydaS NIAGMN_24435 0.65 -1.7 4,779,227 + ydaS NIAGMN_24435 0.66 -0.6 4,780,308 + eCs1768 NIAGMN_24445 0.48 +1.1
Or see this region's nucleotide sequence