Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt solA and bssS are separated by 114 nucleotides bssS and dinI are separated by 289 nucleotides dinI and pyrC are separated by 73 nucleotides pyrC and yceB are separated by 105 nucleotides yceB and grxB are separated by 133 nucleotides
NIAGMN_24085: solA - N-methyl-L-tryptophan oxidase, at 4,712,351 to 4,713,469
solA
NIAGMN_24090: bssS - biofilm formation regulator BssS, at 4,713,584 to 4,713,838
bssS
NIAGMN_24095: dinI - DNA damage-inducible protein I, at 4,714,128 to 4,714,373
dinI
NIAGMN_24100: pyrC - dihydroorotase, at 4,714,447 to 4,715,493
pyrC
NIAGMN_24105: yceB - lipoprotein, at 4,715,599 to 4,716,159
yceB
NIAGMN_24110: grxB - glutaredoxin 2, at 4,716,293 to 4,716,940
grxB
Position (kb) 4714
4715
4716 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4713.503 kb on + strand at 4713.503 kb on + strand at 4713.524 kb on - strand at 4713.648 kb on - strand, within bssS at 4713.648 kb on - strand, within bssS at 4713.648 kb on - strand, within bssS at 4713.769 kb on - strand, within bssS at 4713.769 kb on - strand, within bssS at 4713.773 kb on - strand, within bssS at 4713.798 kb on - strand, within bssS at 4713.798 kb on - strand, within bssS at 4713.860 kb on - strand at 4713.863 kb on - strand at 4713.895 kb on - strand at 4713.924 kb on + strand at 4714.127 kb on - strand at 4714.422 kb on + strand at 4714.903 kb on - strand, within pyrC at 4715.307 kb on + strand, within pyrC at 4715.369 kb on - strand, within pyrC at 4715.703 kb on - strand, within yceB at 4715.703 kb on - strand, within yceB at 4715.719 kb on - strand, within yceB at 4715.723 kb on + strand, within yceB at 4715.724 kb on - strand, within yceB at 4715.724 kb on - strand, within yceB at 4716.146 kb on - strand at 4716.416 kb on + strand, within grxB
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 4,713,503 + +0.4 4,713,503 + -0.5 4,713,524 - +1.7 4,713,648 - bssS NIAGMN_24090 0.25 +0.6 4,713,648 - bssS NIAGMN_24090 0.25 -1.4 4,713,648 - bssS NIAGMN_24090 0.25 -0.3 4,713,769 - bssS NIAGMN_24090 0.73 +1.3 4,713,769 - bssS NIAGMN_24090 0.73 +0.6 4,713,773 - bssS NIAGMN_24090 0.74 -2.1 4,713,798 - bssS NIAGMN_24090 0.84 +0.2 4,713,798 - bssS NIAGMN_24090 0.84 +2.9 4,713,860 - +3.4 4,713,863 - +1.9 4,713,895 - -0.6 4,713,924 + +1.4 4,714,127 - +1.6 4,714,422 + -1.5 4,714,903 - pyrC NIAGMN_24100 0.44 -3.4 4,715,307 + pyrC NIAGMN_24100 0.82 +1.0 4,715,369 - pyrC NIAGMN_24100 0.88 -1.1 4,715,703 - yceB NIAGMN_24105 0.19 -0.0 4,715,703 - yceB NIAGMN_24105 0.19 -3.1 4,715,719 - yceB NIAGMN_24105 0.21 +1.5 4,715,723 + yceB NIAGMN_24105 0.22 -1.0 4,715,724 - yceB NIAGMN_24105 0.22 +2.6 4,715,724 - yceB NIAGMN_24105 0.22 -0.7 4,716,146 - +2.2 4,716,416 + grxB NIAGMN_24110 0.19 -0.0
Or see this region's nucleotide sequence