Strain Fitness in Escherichia coli ECRC102 around NIAGMN_23805

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntdgcT and eAL are separated by 97 nucleotideseAL and NIAGMN_23810 are separated by 101 nucleotidesNIAGMN_23810 and cadC1 are separated by 4 nucleotides NIAGMN_23800: dgcT - putative diguanylate cyclase DgcT, at 4,655,818 to 4,657,176 dgcT NIAGMN_23805: eAL - EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant), at 4,657,274 to 4,658,884 eAL NIAGMN_23810: NIAGMN_23810 - FidL, at 4,658,986 to 4,659,477 _23810 NIAGMN_23815: cadC1 - transcriptional regulator, at 4,659,482 to 4,660,294 cadC1 Position (kb) 4657 4658 4659Strain fitness (log2 ratio) -3 -2 -1 0 1at 4657.258 kb on + strandat 4657.576 kb on + strand, within eAL

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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4,657,258 + -2.6
4,657,576 + eAL NIAGMN_23805 0.19 -3.2

Or see this region's nucleotide sequence