Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS12085

Experiment: Adenine 0.74 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS12070 and A4249_RS12075 are separated by 140 nucleotidesA4249_RS12075 and A4249_RS12080 are separated by 97 nucleotidesA4249_RS12080 and A4249_RS12085 overlap by 1 nucleotidesA4249_RS12085 and A4249_RS12090 are separated by 137 nucleotidesA4249_RS12090 and A4249_RS12095 overlap by 4 nucleotides A4249_RS12070: A4249_RS12070 - hypothetical protein, at 2,421,769 to 2,422,392 _RS12070 A4249_RS12075: A4249_RS12075 - DUF1328 domain-containing protein, at 2,422,533 to 2,422,712 _RS12075 A4249_RS12080: A4249_RS12080 - hypothetical protein, at 2,422,810 to 2,423,220 _RS12080 A4249_RS12085: A4249_RS12085 - DUF883 family protein, at 2,423,220 to 2,423,564 _RS12085 A4249_RS12090: A4249_RS12090 - fumarylacetoacetate hydrolase family protein, at 2,423,702 to 2,424,370 _RS12090 A4249_RS12095: A4249_RS12095 - maleylacetoacetate isomerase, at 2,424,367 to 2,425,002 _RS12095 Position (kb) 2423 2424Strain fitness (log2 ratio) -2 -1 0 1at 2422.350 kb on + strandat 2422.350 kb on + strandat 2422.350 kb on + strandat 2422.350 kb on + strandat 2422.350 kb on + strandat 2422.350 kb on + strandat 2422.351 kb on - strandat 2422.351 kb on - strandat 2422.352 kb on + strandat 2422.352 kb on + strandat 2422.353 kb on - strandat 2422.353 kb on - strandat 2422.353 kb on - strandat 2422.353 kb on - strandat 2422.353 kb on - strandat 2422.353 kb on - strandat 2422.521 kb on + strandat 2422.521 kb on + strandat 2422.522 kb on - strandat 2422.522 kb on - strandat 2422.522 kb on - strandat 2422.525 kb on + strandat 2422.525 kb on + strandat 2422.525 kb on + strandat 2422.525 kb on + strandat 2422.525 kb on + strandat 2422.525 kb on + strandat 2422.526 kb on - strandat 2422.526 kb on - strandat 2422.526 kb on - strandat 2422.526 kb on - strandat 2422.526 kb on - strandat 2422.529 kb on + strandat 2422.529 kb on + strandat 2422.534 kb on + strandat 2422.534 kb on + strandat 2422.534 kb on + strandat 2422.535 kb on - strandat 2422.535 kb on - strandat 2422.596 kb on - strand, within A4249_RS12075at 2422.694 kb on + strand, within A4249_RS12075at 2422.695 kb on - strandat 2422.718 kb on + strandat 2422.718 kb on + strandat 2422.719 kb on - strandat 2423.320 kb on + strand, within A4249_RS12085at 2423.320 kb on + strand, within A4249_RS12085at 2423.320 kb on + strand, within A4249_RS12085at 2423.321 kb on - strand, within A4249_RS12085at 2423.321 kb on - strand, within A4249_RS12085at 2423.321 kb on - strand, within A4249_RS12085at 2423.321 kb on - strand, within A4249_RS12085at 2423.321 kb on - strand, within A4249_RS12085at 2423.321 kb on - strand, within A4249_RS12085at 2423.321 kb on - strand, within A4249_RS12085at 2423.393 kb on - strand, within A4249_RS12085at 2423.393 kb on - strand, within A4249_RS12085at 2423.396 kb on - strand, within A4249_RS12085at 2423.538 kb on - strandat 2423.594 kb on - strandat 2423.599 kb on - strandat 2423.643 kb on + strandat 2423.643 kb on + strandat 2423.644 kb on - strandat 2423.644 kb on - strandat 2423.644 kb on - strandat 2423.644 kb on - strandat 2423.677 kb on + strandat 2423.678 kb on - strandat 2423.689 kb on + strandat 2423.690 kb on - strandat 2423.690 kb on - strandat 2423.690 kb on - strandat 2423.690 kb on - strandat 2423.690 kb on - strandat 2423.804 kb on + strand, within A4249_RS12090at 2423.804 kb on + strand, within A4249_RS12090at 2423.804 kb on + strand, within A4249_RS12090at 2423.805 kb on - strand, within A4249_RS12090at 2423.805 kb on - strand, within A4249_RS12090at 2423.805 kb on - strand, within A4249_RS12090at 2423.805 kb on - strand, within A4249_RS12090at 2423.805 kb on - strand, within A4249_RS12090at 2423.909 kb on + strand, within A4249_RS12090at 2423.936 kb on + strand, within A4249_RS12090at 2423.936 kb on + strand, within A4249_RS12090at 2423.936 kb on + strand, within A4249_RS12090at 2423.937 kb on - strand, within A4249_RS12090at 2423.937 kb on - strand, within A4249_RS12090at 2423.937 kb on - strand, within A4249_RS12090

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
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2,422,350 + -0.3
2,422,350 + -1.6
2,422,350 + -0.9
2,422,350 + +1.0
2,422,350 + +0.0
2,422,350 + -0.3
2,422,351 - -0.6
2,422,351 - -0.7
2,422,352 + -1.2
2,422,352 + -0.3
2,422,353 - -0.2
2,422,353 - -1.8
2,422,353 - +0.0
2,422,353 - +0.4
2,422,353 - +0.2
2,422,353 - +0.6
2,422,521 + -0.2
2,422,521 + +0.2
2,422,522 - +0.1
2,422,522 - +0.1
2,422,522 - -1.1
2,422,525 + +0.9
2,422,525 + -1.0
2,422,525 + -0.1
2,422,525 + +0.2
2,422,525 + +0.8
2,422,525 + +1.2
2,422,526 - -2.1
2,422,526 - -0.3
2,422,526 - -0.0
2,422,526 - -0.9
2,422,526 - -0.3
2,422,529 + -1.4
2,422,529 + +0.6
2,422,534 + -0.5
2,422,534 + +0.8
2,422,534 + -1.0
2,422,535 - -0.7
2,422,535 - +0.1
2,422,596 - A4249_RS12075 0.35 +0.7
2,422,694 + A4249_RS12075 0.89 +0.4
2,422,695 - -0.4
2,422,718 + -0.7
2,422,718 + +1.2
2,422,719 - +0.4
2,423,320 + A4249_RS12085 0.29 +1.2
2,423,320 + A4249_RS12085 0.29 +0.6
2,423,320 + A4249_RS12085 0.29 +1.2
2,423,321 - A4249_RS12085 0.29 +0.6
2,423,321 - A4249_RS12085 0.29 -0.8
2,423,321 - A4249_RS12085 0.29 -0.2
2,423,321 - A4249_RS12085 0.29 -0.4
2,423,321 - A4249_RS12085 0.29 -0.7
2,423,321 - A4249_RS12085 0.29 +0.6
2,423,321 - A4249_RS12085 0.29 -0.8
2,423,393 - A4249_RS12085 0.50 +0.2
2,423,393 - A4249_RS12085 0.50 -0.1
2,423,396 - A4249_RS12085 0.51 -1.2
2,423,538 - +0.3
2,423,594 - +0.1
2,423,599 - -0.1
2,423,643 + +0.3
2,423,643 + +0.1
2,423,644 - -0.2
2,423,644 - -0.4
2,423,644 - -0.2
2,423,644 - +0.4
2,423,677 + -0.5
2,423,678 - -0.2
2,423,689 + -0.5
2,423,690 - -0.1
2,423,690 - -0.3
2,423,690 - -0.6
2,423,690 - +0.2
2,423,690 - +0.1
2,423,804 + A4249_RS12090 0.15 -0.7
2,423,804 + A4249_RS12090 0.15 +0.1
2,423,804 + A4249_RS12090 0.15 -0.3
2,423,805 - A4249_RS12090 0.15 +0.0
2,423,805 - A4249_RS12090 0.15 +0.1
2,423,805 - A4249_RS12090 0.15 -0.5
2,423,805 - A4249_RS12090 0.15 -0.3
2,423,805 - A4249_RS12090 0.15 +0.6
2,423,909 + A4249_RS12090 0.31 -0.2
2,423,936 + A4249_RS12090 0.35 +0.0
2,423,936 + A4249_RS12090 0.35 -0.6
2,423,936 + A4249_RS12090 0.35 -0.0
2,423,937 - A4249_RS12090 0.35 +0.3
2,423,937 - A4249_RS12090 0.35 +0.2
2,423,937 - A4249_RS12090 0.35 +0.6

Or see this region's nucleotide sequence