Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS26385 and ABID97_RS26390 are separated by 2 nucleotides ABID97_RS26390 and ABID97_RS26395 are separated by 179 nucleotides ABID97_RS26395 and ABID97_RS26400 are separated by 180 nucleotides ABID97_RS26400 and ABID97_RS26405 are separated by 124 nucleotides
ABID97_RS26385: ABID97_RS26385 - cupin domain-containing protein, at 197,816 to 198,172
_RS26385
ABID97_RS26390: ABID97_RS26390 - HAD-IA family hydrolase, at 198,175 to 198,873
_RS26390
ABID97_RS26395: ABID97_RS26395 - DUF2231 domain-containing protein, at 199,053 to 199,547
_RS26395
ABID97_RS26400: ABID97_RS26400 - hypothetical protein, at 199,728 to 200,159
_RS26400
ABID97_RS26405: ABID97_RS26405 - hypothetical protein, at 200,284 to 200,604
_RS26405
Position (kb) 199
200 Strain fitness (log2 ratio) -1
0
1 at 198.228 kb on - strand at 198.341 kb on + strand, within ABID97_RS26390 at 198.738 kb on - strand, within ABID97_RS26390 at 198.795 kb on - strand, within ABID97_RS26390 at 198.942 kb on - strand at 198.950 kb on - strand at 199.054 kb on + strand at 199.054 kb on + strand at 199.447 kb on + strand, within ABID97_RS26395 at 199.629 kb on - strand at 199.681 kb on + strand at 199.681 kb on + strand at 199.682 kb on - strand at 199.717 kb on - strand at 199.717 kb on - strand at 200.377 kb on + strand, within ABID97_RS26405
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 198,228 - +0.7 198,341 + ABID97_RS26390 0.24 -0.0 198,738 - ABID97_RS26390 0.81 -0.4 198,795 - ABID97_RS26390 0.89 +0.6 198,942 - -0.3 198,950 - +1.0 199,054 + -0.1 199,054 + -0.7 199,447 + ABID97_RS26395 0.80 -1.3 199,629 - +1.0 199,681 + -0.4 199,681 + +1.6 199,682 - -0.4 199,717 - -1.3 199,717 - +0.9 200,377 + ABID97_RS26405 0.29 -0.2
Or see this region's nucleotide sequence