Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS04500 and ABID97_RS04505 are separated by 41 nucleotides ABID97_RS04505 and ABID97_RS04510 are separated by 87 nucleotides ABID97_RS04510 and ABID97_RS04515 are separated by 148 nucleotides
ABID97_RS04500: ABID97_RS04500 - HPr(Ser) kinase/phosphatase, at 932,842 to 933,801
_RS04500
ABID97_RS04505: ABID97_RS04505 - ferric iron uptake transcriptional regulator, at 933,843 to 934,262
_RS04505
ABID97_RS04510: ABID97_RS04510 - outer membrane protein assembly factor BamE, at 934,350 to 934,913
_RS04510
ABID97_RS04515: ABID97_RS04515 - 4-hydroxy-tetrahydrodipicolinate reductase, at 935,062 to 935,862
_RS04515
Position (kb) 933
934
935 Strain fitness (log2 ratio) -1
0
1 at 933.001 kb on + strand, within ABID97_RS04500 at 933.049 kb on + strand, within ABID97_RS04500 at 933.877 kb on + strand at 933.877 kb on + strand at 933.878 kb on - strand at 933.878 kb on - strand at 934.027 kb on + strand, within ABID97_RS04505 at 934.027 kb on + strand, within ABID97_RS04505 at 934.028 kb on - strand, within ABID97_RS04505 at 934.099 kb on + strand, within ABID97_RS04505 at 934.235 kb on + strand at 934.313 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 933,001 + ABID97_RS04500 0.17 +0.2 933,049 + ABID97_RS04500 0.22 -1.3 933,877 + +0.1 933,877 + -1.4 933,878 - -0.6 933,878 - -0.0 934,027 + ABID97_RS04505 0.44 -1.1 934,027 + ABID97_RS04505 0.44 +0.1 934,028 - ABID97_RS04505 0.44 -1.5 934,099 + ABID97_RS04505 0.61 +0.7 934,235 + -1.2 934,313 - -0.1
Or see this region's nucleotide sequence