Experiment: Cytidine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS00185 and CA265_RS00190 are separated by 92 nucleotides CA265_RS00190 and CA265_RS00195 are separated by 141 nucleotides CA265_RS00195 and CA265_RS00200 are separated by 123 nucleotides CA265_RS00200 and CA265_RS00205 are separated by 19 nucleotides
CA265_RS00185: CA265_RS00185 - hypothetical protein, at 46,507 to 47,994
_RS00185
CA265_RS00190: CA265_RS00190 - hypothetical protein, at 48,087 to 48,680
_RS00190
CA265_RS00195: CA265_RS00195 - hypothetical protein, at 48,822 to 49,157
_RS00195
CA265_RS00200: CA265_RS00200 - N-acetyltransferase, at 49,281 to 49,886
_RS00200
CA265_RS00205: CA265_RS00205 - acetylornithine deacetylase, at 49,906 to 51,006
_RS00205
Position (kb) 48
49
50 Strain fitness (log2 ratio) -2
-1
0
1 at 47.977 kb on - strand at 48.001 kb on - strand at 48.005 kb on + strand at 48.006 kb on - strand at 48.024 kb on + strand at 48.025 kb on - strand at 48.100 kb on - strand at 48.105 kb on + strand at 48.106 kb on - strand at 48.180 kb on + strand, within CA265_RS00190 at 48.184 kb on + strand, within CA265_RS00190 at 48.217 kb on - strand, within CA265_RS00190 at 48.283 kb on - strand, within CA265_RS00190 at 48.304 kb on + strand, within CA265_RS00190 at 48.304 kb on + strand, within CA265_RS00190 at 48.305 kb on - strand, within CA265_RS00190 at 48.362 kb on - strand, within CA265_RS00190 at 48.424 kb on + strand, within CA265_RS00190 at 48.476 kb on + strand, within CA265_RS00190 at 48.503 kb on + strand, within CA265_RS00190 at 48.503 kb on + strand, within CA265_RS00190 at 48.543 kb on - strand, within CA265_RS00190 at 48.548 kb on + strand, within CA265_RS00190 at 48.549 kb on - strand, within CA265_RS00190 at 48.560 kb on - strand, within CA265_RS00190 at 48.572 kb on + strand, within CA265_RS00190 at 48.576 kb on - strand, within CA265_RS00190 at 48.576 kb on - strand, within CA265_RS00190 at 48.609 kb on - strand, within CA265_RS00190 at 48.616 kb on - strand, within CA265_RS00190 at 48.680 kb on + strand at 48.681 kb on - strand at 48.683 kb on - strand at 48.683 kb on - strand at 48.690 kb on - strand at 48.728 kb on + strand at 48.729 kb on - strand at 48.737 kb on - strand at 48.771 kb on - strand at 48.793 kb on - strand at 48.831 kb on + strand at 48.837 kb on + strand at 48.858 kb on - strand, within CA265_RS00195 at 48.868 kb on - strand, within CA265_RS00195 at 49.000 kb on - strand, within CA265_RS00195 at 49.022 kb on + strand, within CA265_RS00195 at 49.022 kb on + strand, within CA265_RS00195 at 49.047 kb on + strand, within CA265_RS00195 at 49.047 kb on + strand, within CA265_RS00195 at 49.048 kb on - strand, within CA265_RS00195 at 49.048 kb on - strand, within CA265_RS00195 at 49.122 kb on - strand, within CA265_RS00195 at 49.130 kb on + strand at 49.152 kb on + strand at 49.153 kb on - strand at 49.217 kb on + strand at 49.227 kb on + strand at 49.280 kb on - strand at 49.406 kb on - strand, within CA265_RS00200 at 49.532 kb on + strand, within CA265_RS00200 at 49.533 kb on - strand, within CA265_RS00200 at 49.612 kb on - strand, within CA265_RS00200 at 49.612 kb on - strand, within CA265_RS00200 at 49.637 kb on + strand, within CA265_RS00200 at 49.638 kb on - strand, within CA265_RS00200 at 49.655 kb on + strand, within CA265_RS00200 at 49.841 kb on - strand at 49.878 kb on + strand at 49.879 kb on - strand at 49.960 kb on + strand at 50.070 kb on + strand, within CA265_RS00205 at 50.104 kb on + strand, within CA265_RS00205
Per-strain Table
Position Strand Gene LocusTag Fraction Cytidine (N) remove 47,977 - -0.1 48,001 - -0.8 48,005 + +0.2 48,006 - +0.2 48,024 + +1.1 48,025 - +0.4 48,100 - +0.3 48,105 + -0.2 48,106 - -0.1 48,180 + CA265_RS00190 0.16 +0.2 48,184 + CA265_RS00190 0.16 +0.5 48,217 - CA265_RS00190 0.22 +0.9 48,283 - CA265_RS00190 0.33 +0.6 48,304 + CA265_RS00190 0.37 -2.2 48,304 + CA265_RS00190 0.37 -0.3 48,305 - CA265_RS00190 0.37 +0.0 48,362 - CA265_RS00190 0.46 +0.4 48,424 + CA265_RS00190 0.57 -1.5 48,476 + CA265_RS00190 0.65 -0.0 48,503 + CA265_RS00190 0.70 -0.6 48,503 + CA265_RS00190 0.70 +0.5 48,543 - CA265_RS00190 0.77 -0.2 48,548 + CA265_RS00190 0.78 -0.1 48,549 - CA265_RS00190 0.78 +0.4 48,560 - CA265_RS00190 0.80 -0.5 48,572 + CA265_RS00190 0.82 +0.8 48,576 - CA265_RS00190 0.82 -0.6 48,576 - CA265_RS00190 0.82 +0.4 48,609 - CA265_RS00190 0.88 +0.5 48,616 - CA265_RS00190 0.89 -0.4 48,680 + -1.3 48,681 - +0.0 48,683 - +0.2 48,683 - +0.4 48,690 - +0.8 48,728 + -1.0 48,729 - -0.8 48,737 - +1.2 48,771 - -0.8 48,793 - -0.6 48,831 + +0.4 48,837 + +0.2 48,858 - CA265_RS00195 0.11 -2.6 48,868 - CA265_RS00195 0.14 -0.6 49,000 - CA265_RS00195 0.53 -1.3 49,022 + CA265_RS00195 0.60 +0.3 49,022 + CA265_RS00195 0.60 +0.1 49,047 + CA265_RS00195 0.67 -1.6 49,047 + CA265_RS00195 0.67 +0.2 49,048 - CA265_RS00195 0.67 +0.9 49,048 - CA265_RS00195 0.67 -0.3 49,122 - CA265_RS00195 0.89 -1.3 49,130 + -0.3 49,152 + -0.1 49,153 - -0.7 49,217 + +0.5 49,227 + -0.2 49,280 - +0.4 49,406 - CA265_RS00200 0.21 +0.3 49,532 + CA265_RS00200 0.41 +0.4 49,533 - CA265_RS00200 0.42 -0.1 49,612 - CA265_RS00200 0.55 +1.0 49,612 - CA265_RS00200 0.55 +0.2 49,637 + CA265_RS00200 0.59 +0.1 49,638 - CA265_RS00200 0.59 -0.8 49,655 + CA265_RS00200 0.62 -1.3 49,841 - +0.8 49,878 + -0.5 49,879 - -0.2 49,960 + -0.2 50,070 + CA265_RS00205 0.15 -1.9 50,104 + CA265_RS00205 0.18 +0.6
Or see this region's nucleotide sequence