Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_08310 and CA264_08315 are separated by 27 nucleotides CA264_08315 and CA264_08320 are separated by 412 nucleotides
CA264_08310: CA264_08310 - hypothetical protein, at 1,917,953 to 1,922,086
_08310
CA264_08315: CA264_08315 - PAS sensor protein, at 1,922,114 to 1,923,667
_08315
CA264_08320: CA264_08320 - hypothetical protein, at 1,924,080 to 1,925,078
_08320
Position (kb)
1922
1923
1924 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1921.135 kb on + strand, within CA264_08310 at 1921.139 kb on - strand, within CA264_08310 at 1921.258 kb on - strand, within CA264_08310 at 1921.266 kb on + strand, within CA264_08310 at 1921.267 kb on - strand, within CA264_08310 at 1921.284 kb on - strand, within CA264_08310 at 1921.339 kb on - strand, within CA264_08310 at 1921.339 kb on - strand, within CA264_08310 at 1921.474 kb on - strand, within CA264_08310 at 1921.515 kb on + strand, within CA264_08310 at 1921.515 kb on + strand, within CA264_08310 at 1921.515 kb on + strand, within CA264_08310 at 1921.516 kb on - strand, within CA264_08310 at 1921.516 kb on - strand, within CA264_08310 at 1921.516 kb on - strand, within CA264_08310 at 1921.516 kb on - strand, within CA264_08310 at 1921.520 kb on + strand, within CA264_08310 at 1921.521 kb on - strand, within CA264_08310 at 1921.521 kb on - strand, within CA264_08310 at 1921.611 kb on - strand, within CA264_08310 at 1921.672 kb on - strand, within CA264_08310 at 1921.779 kb on - strand at 1921.779 kb on - strand at 1921.803 kb on + strand at 1921.823 kb on - strand at 1921.919 kb on + strand at 1921.919 kb on + strand at 1921.943 kb on - strand at 1921.970 kb on + strand at 1921.971 kb on - strand at 1922.014 kb on - strand at 1922.031 kb on - strand at 1922.066 kb on + strand at 1922.066 kb on + strand at 1922.087 kb on - strand at 1922.115 kb on + strand at 1922.118 kb on + strand at 1922.119 kb on - strand at 1922.174 kb on + strand at 1922.205 kb on + strand at 1922.205 kb on + strand at 1922.250 kb on + strand at 1922.277 kb on - strand, within CA264_08315 at 1922.343 kb on + strand, within CA264_08315 at 1922.343 kb on + strand, within CA264_08315 at 1922.344 kb on - strand, within CA264_08315 at 1922.400 kb on + strand, within CA264_08315 at 1922.401 kb on - strand, within CA264_08315 at 1922.512 kb on + strand, within CA264_08315 at 1922.541 kb on + strand, within CA264_08315 at 1922.542 kb on - strand, within CA264_08315 at 1922.580 kb on - strand, within CA264_08315 at 1922.629 kb on - strand, within CA264_08315 at 1922.629 kb on - strand, within CA264_08315 at 1922.629 kb on - strand, within CA264_08315 at 1922.654 kb on + strand, within CA264_08315 at 1922.654 kb on + strand, within CA264_08315 at 1922.760 kb on + strand, within CA264_08315 at 1922.933 kb on - strand, within CA264_08315 at 1923.010 kb on - strand, within CA264_08315 at 1923.227 kb on - strand, within CA264_08315 at 1923.227 kb on - strand, within CA264_08315 at 1923.232 kb on - strand, within CA264_08315 at 1923.414 kb on + strand, within CA264_08315 at 1923.488 kb on - strand, within CA264_08315 at 1923.491 kb on + strand, within CA264_08315 at 1923.572 kb on + strand at 1923.573 kb on - strand at 1923.622 kb on - strand at 1923.625 kb on + strand at 1923.625 kb on + strand at 1923.626 kb on - strand at 1923.626 kb on - strand at 1923.633 kb on - strand at 1923.764 kb on + strand at 1923.835 kb on - strand at 1923.913 kb on - strand at 1924.047 kb on + strand at 1924.047 kb on + strand at 1924.047 kb on + strand at 1924.047 kb on + strand at 1924.048 kb on - strand at 1924.048 kb on - strand at 1924.048 kb on - strand at 1924.048 kb on - strand at 1924.063 kb on + strand at 1924.064 kb on - strand at 1924.091 kb on + strand at 1924.097 kb on - strand at 1924.099 kb on - strand at 1924.160 kb on + strand at 1924.161 kb on - strand at 1924.210 kb on - strand, within CA264_08320 at 1924.212 kb on - strand, within CA264_08320 at 1924.519 kb on - strand, within CA264_08320 at 1924.586 kb on - strand, within CA264_08320
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol% remove 1,921,135 + CA264_08310 0.77 -0.5 1,921,139 - CA264_08310 0.77 -1.8 1,921,258 - CA264_08310 0.80 +0.4 1,921,266 + CA264_08310 0.80 -0.2 1,921,267 - CA264_08310 0.80 +1.1 1,921,284 - CA264_08310 0.81 +0.6 1,921,339 - CA264_08310 0.82 +0.0 1,921,339 - CA264_08310 0.82 +0.6 1,921,474 - CA264_08310 0.85 -2.1 1,921,515 + CA264_08310 0.86 +0.7 1,921,515 + CA264_08310 0.86 +0.2 1,921,515 + CA264_08310 0.86 -0.2 1,921,516 - CA264_08310 0.86 -0.7 1,921,516 - CA264_08310 0.86 -0.7 1,921,516 - CA264_08310 0.86 -1.3 1,921,516 - CA264_08310 0.86 +0.2 1,921,520 + CA264_08310 0.86 -0.6 1,921,521 - CA264_08310 0.86 +1.3 1,921,521 - CA264_08310 0.86 +0.4 1,921,611 - CA264_08310 0.88 -0.4 1,921,672 - CA264_08310 0.90 +0.7 1,921,779 - -1.3 1,921,779 - -0.4 1,921,803 + -0.1 1,921,823 - -0.1 1,921,919 + +0.5 1,921,919 + +0.6 1,921,943 - -1.1 1,921,970 + -0.1 1,921,971 - +0.6 1,922,014 - +1.3 1,922,031 - -0.7 1,922,066 + -0.5 1,922,066 + +0.6 1,922,087 - -0.4 1,922,115 + +0.2 1,922,118 + +0.1 1,922,119 - +0.0 1,922,174 + -0.1 1,922,205 + -0.0 1,922,205 + +0.8 1,922,250 + -0.3 1,922,277 - CA264_08315 0.10 +1.3 1,922,343 + CA264_08315 0.15 -0.2 1,922,343 + CA264_08315 0.15 -2.5 1,922,344 - CA264_08315 0.15 -0.1 1,922,400 + CA264_08315 0.18 -0.1 1,922,401 - CA264_08315 0.18 -0.6 1,922,512 + CA264_08315 0.26 -1.3 1,922,541 + CA264_08315 0.27 -0.7 1,922,542 - CA264_08315 0.28 -0.9 1,922,580 - CA264_08315 0.30 -0.7 1,922,629 - CA264_08315 0.33 -0.2 1,922,629 - CA264_08315 0.33 -0.1 1,922,629 - CA264_08315 0.33 +0.8 1,922,654 + CA264_08315 0.35 -0.6 1,922,654 + CA264_08315 0.35 -0.7 1,922,760 + CA264_08315 0.42 +0.2 1,922,933 - CA264_08315 0.53 -0.1 1,923,010 - CA264_08315 0.58 +0.9 1,923,227 - CA264_08315 0.72 +0.1 1,923,227 - CA264_08315 0.72 +0.0 1,923,232 - CA264_08315 0.72 -0.6 1,923,414 + CA264_08315 0.84 -1.1 1,923,488 - CA264_08315 0.88 -0.8 1,923,491 + CA264_08315 0.89 -0.5 1,923,572 + -0.3 1,923,573 - -1.5 1,923,622 - -0.3 1,923,625 + -1.1 1,923,625 + -0.1 1,923,626 - +0.3 1,923,626 - +3.5 1,923,633 - +0.1 1,923,764 + -1.0 1,923,835 - -0.1 1,923,913 - +0.3 1,924,047 + -0.8 1,924,047 + +1.5 1,924,047 + -0.1 1,924,047 + -1.2 1,924,048 - +0.0 1,924,048 - -0.4 1,924,048 - +0.9 1,924,048 - +0.1 1,924,063 + -0.3 1,924,064 - -1.5 1,924,091 + +0.6 1,924,097 - -0.1 1,924,099 - -1.7 1,924,160 + -0.8 1,924,161 - -1.7 1,924,210 - CA264_08320 0.13 -1.2 1,924,212 - CA264_08320 0.13 +0.5 1,924,519 - CA264_08320 0.44 +1.5 1,924,586 - CA264_08320 0.51 -1.9
Or see this region's nucleotide sequence