Experiment: H2 McCas, 5g/L bicarb, 40 psi H2CO2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS01390 and MMJJ_RS01395 are separated by 69 nucleotides MMJJ_RS01395 and MMJJ_RS01400 are separated by 26 nucleotides
MMJJ_RS01390: MMJJ_RS01390 - MATE family efflux transporter, at 268,109 to 269,452
_RS01390
MMJJ_RS01395: MMJJ_RS01395 - DUF1894 domain-containing protein, at 269,522 to 269,839
_RS01395
MMJJ_RS01400: MMJJ_RS01400 - leucine--tRNA ligase, at 269,866 to 272,733
_RS01400
Position (kb) 269
270 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 268.527 kb on - strand, within MMJJ_RS01390 at 268.531 kb on + strand, within MMJJ_RS01390 at 268.545 kb on - strand, within MMJJ_RS01390 at 268.545 kb on - strand, within MMJJ_RS01390 at 268.556 kb on - strand, within MMJJ_RS01390 at 268.556 kb on - strand, within MMJJ_RS01390 at 268.560 kb on - strand, within MMJJ_RS01390 at 268.560 kb on - strand, within MMJJ_RS01390 at 268.561 kb on + strand, within MMJJ_RS01390 at 268.561 kb on + strand, within MMJJ_RS01390 at 268.636 kb on - strand, within MMJJ_RS01390 at 268.636 kb on - strand, within MMJJ_RS01390 at 268.636 kb on - strand, within MMJJ_RS01390 at 268.636 kb on - strand, within MMJJ_RS01390 at 268.639 kb on + strand, within MMJJ_RS01390 at 268.639 kb on + strand, within MMJJ_RS01390 at 268.645 kb on + strand, within MMJJ_RS01390 at 268.659 kb on - strand, within MMJJ_RS01390 at 268.659 kb on - strand, within MMJJ_RS01390 at 268.668 kb on - strand, within MMJJ_RS01390 at 268.668 kb on - strand, within MMJJ_RS01390 at 268.668 kb on - strand, within MMJJ_RS01390 at 268.668 kb on - strand, within MMJJ_RS01390 at 268.668 kb on - strand, within MMJJ_RS01390 at 268.669 kb on + strand, within MMJJ_RS01390 at 268.669 kb on + strand, within MMJJ_RS01390 at 268.669 kb on + strand, within MMJJ_RS01390 at 268.671 kb on - strand, within MMJJ_RS01390 at 268.671 kb on - strand at 268.672 kb on + strand, within MMJJ_RS01390 at 268.672 kb on + strand, within MMJJ_RS01390 at 268.679 kb on + strand, within MMJJ_RS01390 at 268.711 kb on + strand, within MMJJ_RS01390 at 268.737 kb on + strand, within MMJJ_RS01390 at 268.741 kb on - strand, within MMJJ_RS01390 at 268.742 kb on + strand, within MMJJ_RS01390 at 268.744 kb on + strand, within MMJJ_RS01390 at 268.744 kb on + strand, within MMJJ_RS01390 at 268.766 kb on + strand, within MMJJ_RS01390 at 268.808 kb on + strand, within MMJJ_RS01390 at 268.827 kb on - strand, within MMJJ_RS01390 at 268.832 kb on + strand, within MMJJ_RS01390 at 268.862 kb on + strand, within MMJJ_RS01390 at 268.863 kb on - strand, within MMJJ_RS01390 at 268.863 kb on - strand, within MMJJ_RS01390 at 268.863 kb on - strand, within MMJJ_RS01390 at 268.863 kb on - strand, within MMJJ_RS01390 at 268.863 kb on - strand, within MMJJ_RS01390 at 268.863 kb on - strand, within MMJJ_RS01390 at 268.863 kb on - strand, within MMJJ_RS01390 at 268.864 kb on + strand, within MMJJ_RS01390 at 268.864 kb on + strand, within MMJJ_RS01390 at 268.864 kb on + strand, within MMJJ_RS01390 at 268.864 kb on + strand, within MMJJ_RS01390 at 268.864 kb on + strand, within MMJJ_RS01390 at 268.864 kb on + strand, within MMJJ_RS01390 at 268.867 kb on - strand, within MMJJ_RS01390 at 268.868 kb on + strand, within MMJJ_RS01390 at 268.891 kb on - strand, within MMJJ_RS01390 at 268.905 kb on - strand, within MMJJ_RS01390 at 268.906 kb on + strand, within MMJJ_RS01390 at 268.906 kb on + strand, within MMJJ_RS01390 at 268.907 kb on - strand, within MMJJ_RS01390 at 268.908 kb on + strand, within MMJJ_RS01390 at 268.908 kb on + strand, within MMJJ_RS01390 at 268.908 kb on + strand, within MMJJ_RS01390 at 268.941 kb on - strand, within MMJJ_RS01390 at 268.942 kb on + strand, within MMJJ_RS01390 at 269.016 kb on + strand, within MMJJ_RS01390 at 269.017 kb on - strand, within MMJJ_RS01390 at 269.018 kb on + strand, within MMJJ_RS01390 at 269.018 kb on + strand, within MMJJ_RS01390 at 269.018 kb on + strand, within MMJJ_RS01390 at 269.021 kb on - strand, within MMJJ_RS01390 at 269.037 kb on - strand, within MMJJ_RS01390 at 269.038 kb on + strand, within MMJJ_RS01390 at 269.071 kb on + strand, within MMJJ_RS01390 at 269.104 kb on - strand, within MMJJ_RS01390 at 269.105 kb on + strand, within MMJJ_RS01390 at 269.107 kb on + strand, within MMJJ_RS01390 at 269.112 kb on - strand, within MMJJ_RS01390 at 269.112 kb on - strand, within MMJJ_RS01390 at 269.112 kb on - strand, within MMJJ_RS01390 at 269.142 kb on - strand, within MMJJ_RS01390 at 269.143 kb on + strand, within MMJJ_RS01390 at 269.148 kb on - strand, within MMJJ_RS01390 at 269.163 kb on - strand, within MMJJ_RS01390 at 269.193 kb on - strand, within MMJJ_RS01390 at 269.236 kb on + strand, within MMJJ_RS01390 at 269.244 kb on - strand, within MMJJ_RS01390 at 269.244 kb on - strand, within MMJJ_RS01390 at 269.246 kb on - strand, within MMJJ_RS01390 at 269.304 kb on - strand, within MMJJ_RS01390 at 269.305 kb on + strand, within MMJJ_RS01390 at 269.388 kb on - strand at 269.413 kb on - strand at 269.414 kb on + strand at 269.414 kb on + strand at 269.415 kb on - strand at 269.416 kb on + strand at 269.416 kb on + strand at 269.442 kb on - strand at 269.442 kb on - strand at 269.443 kb on + strand at 269.472 kb on + strand at 269.472 kb on + strand at 269.494 kb on - strand at 269.495 kb on + strand at 269.498 kb on - strand at 269.517 kb on - strand at 269.517 kb on - strand at 269.595 kb on - strand, within MMJJ_RS01395 at 269.632 kb on + strand, within MMJJ_RS01395 at 269.644 kb on - strand, within MMJJ_RS01395 at 269.657 kb on - strand, within MMJJ_RS01395 at 269.674 kb on + strand, within MMJJ_RS01395 at 269.702 kb on + strand, within MMJJ_RS01395 at 269.767 kb on - strand, within MMJJ_RS01395 at 269.767 kb on - strand, within MMJJ_RS01395 at 269.767 kb on - strand, within MMJJ_RS01395 at 269.773 kb on + strand, within MMJJ_RS01395
Per-strain Table
Position Strand Gene LocusTag Fraction H2 McCas, 5g/L bicarb, 40 psi H2CO2 remove 268,527 - MMJJ_RS01390 0.31 +0.5 268,531 + MMJJ_RS01390 0.31 -4.1 268,545 - MMJJ_RS01390 0.32 +0.6 268,545 - MMJJ_RS01390 0.32 -1.0 268,556 - MMJJ_RS01390 0.33 -1.8 268,556 - MMJJ_RS01390 0.33 +0.3 268,560 - MMJJ_RS01390 0.34 -0.3 268,560 - MMJJ_RS01390 0.34 -0.1 268,561 + MMJJ_RS01390 0.34 +0.8 268,561 + MMJJ_RS01390 0.34 +1.2 268,636 - MMJJ_RS01390 0.39 +0.4 268,636 - MMJJ_RS01390 0.39 -0.5 268,636 - MMJJ_RS01390 0.39 +1.1 268,636 - MMJJ_RS01390 0.39 +2.1 268,639 + MMJJ_RS01390 0.39 -0.3 268,639 + MMJJ_RS01390 0.39 -1.2 268,645 + MMJJ_RS01390 0.40 +1.3 268,659 - MMJJ_RS01390 0.41 -1.1 268,659 - MMJJ_RS01390 0.41 +1.5 268,668 - MMJJ_RS01390 0.42 -0.5 268,668 - MMJJ_RS01390 0.42 +2.2 268,668 - MMJJ_RS01390 0.42 -0.3 268,668 - MMJJ_RS01390 0.42 -2.8 268,668 - MMJJ_RS01390 0.42 +0.2 268,669 + MMJJ_RS01390 0.42 -0.0 268,669 + MMJJ_RS01390 0.42 +0.8 268,669 + MMJJ_RS01390 0.42 +0.0 268,671 - MMJJ_RS01390 0.42 +0.6 268,671 - +2.7 268,672 + MMJJ_RS01390 0.42 +0.6 268,672 + MMJJ_RS01390 0.42 -1.9 268,679 + MMJJ_RS01390 0.42 +1.2 268,711 + MMJJ_RS01390 0.45 +0.1 268,737 + MMJJ_RS01390 0.47 +0.5 268,741 - MMJJ_RS01390 0.47 -0.6 268,742 + MMJJ_RS01390 0.47 +0.0 268,744 + MMJJ_RS01390 0.47 +0.2 268,744 + MMJJ_RS01390 0.47 -1.5 268,766 + MMJJ_RS01390 0.49 -1.0 268,808 + MMJJ_RS01390 0.52 +1.3 268,827 - MMJJ_RS01390 0.53 -4.1 268,832 + MMJJ_RS01390 0.54 -0.1 268,862 + MMJJ_RS01390 0.56 -0.9 268,863 - MMJJ_RS01390 0.56 +0.7 268,863 - MMJJ_RS01390 0.56 +1.2 268,863 - MMJJ_RS01390 0.56 -3.7 268,863 - MMJJ_RS01390 0.56 +1.4 268,863 - MMJJ_RS01390 0.56 -0.5 268,863 - MMJJ_RS01390 0.56 -0.6 268,863 - MMJJ_RS01390 0.56 +0.9 268,864 + MMJJ_RS01390 0.56 -1.0 268,864 + MMJJ_RS01390 0.56 -2.8 268,864 + MMJJ_RS01390 0.56 +1.1 268,864 + MMJJ_RS01390 0.56 -1.2 268,864 + MMJJ_RS01390 0.56 +0.7 268,864 + MMJJ_RS01390 0.56 +0.4 268,867 - MMJJ_RS01390 0.56 +0.5 268,868 + MMJJ_RS01390 0.56 -0.3 268,891 - MMJJ_RS01390 0.58 -0.3 268,905 - MMJJ_RS01390 0.59 -0.7 268,906 + MMJJ_RS01390 0.59 +0.7 268,906 + MMJJ_RS01390 0.59 -1.5 268,907 - MMJJ_RS01390 0.59 -3.9 268,908 + MMJJ_RS01390 0.59 +0.7 268,908 + MMJJ_RS01390 0.59 -1.7 268,908 + MMJJ_RS01390 0.59 +0.5 268,941 - MMJJ_RS01390 0.62 -0.3 268,942 + MMJJ_RS01390 0.62 -3.2 269,016 + MMJJ_RS01390 0.67 -1.7 269,017 - MMJJ_RS01390 0.68 +0.4 269,018 + MMJJ_RS01390 0.68 +1.0 269,018 + MMJJ_RS01390 0.68 -0.7 269,018 + MMJJ_RS01390 0.68 -0.7 269,021 - MMJJ_RS01390 0.68 -1.4 269,037 - MMJJ_RS01390 0.69 +1.5 269,038 + MMJJ_RS01390 0.69 -1.0 269,071 + MMJJ_RS01390 0.72 +0.7 269,104 - MMJJ_RS01390 0.74 -2.6 269,105 + MMJJ_RS01390 0.74 -0.0 269,107 + MMJJ_RS01390 0.74 -0.8 269,112 - MMJJ_RS01390 0.75 +0.6 269,112 - MMJJ_RS01390 0.75 +0.6 269,112 - MMJJ_RS01390 0.75 +0.7 269,142 - MMJJ_RS01390 0.77 +0.3 269,143 + MMJJ_RS01390 0.77 -0.8 269,148 - MMJJ_RS01390 0.77 -0.3 269,163 - MMJJ_RS01390 0.78 -0.0 269,193 - MMJJ_RS01390 0.81 +0.5 269,236 + MMJJ_RS01390 0.84 -0.0 269,244 - MMJJ_RS01390 0.84 -0.4 269,244 - MMJJ_RS01390 0.84 -0.3 269,246 - MMJJ_RS01390 0.85 +1.2 269,304 - MMJJ_RS01390 0.89 +0.2 269,305 + MMJJ_RS01390 0.89 +0.2 269,388 - +1.2 269,413 - +1.0 269,414 + -0.7 269,414 + +2.2 269,415 - +0.2 269,416 + -0.0 269,416 + +1.8 269,442 - +0.5 269,442 - +0.6 269,443 + +0.3 269,472 + -0.5 269,472 + -1.0 269,494 - -1.8 269,495 + +0.1 269,498 - -0.3 269,517 - -0.2 269,517 - +1.1 269,595 - MMJJ_RS01395 0.23 -3.3 269,632 + MMJJ_RS01395 0.35 +0.6 269,644 - MMJJ_RS01395 0.38 +0.9 269,657 - MMJJ_RS01395 0.42 +1.9 269,674 + MMJJ_RS01395 0.48 -1.6 269,702 + MMJJ_RS01395 0.57 +2.4 269,767 - MMJJ_RS01395 0.77 -0.4 269,767 - MMJJ_RS01395 0.77 +0.8 269,767 - MMJJ_RS01395 0.77 +1.3 269,773 + MMJJ_RS01395 0.79 +0.0
Or see this region's nucleotide sequence