Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0492

Experiment: Tetracycline 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0491 and Ga0059261_0492 are separated by 13 nucleotidesGa0059261_0492 and Ga0059261_0493 are separated by 83 nucleotidesGa0059261_0493 and Ga0059261_0494 are separated by 20 nucleotides Ga0059261_0491: Ga0059261_0491 - Zn-dependent dipeptidase, microsomal dipeptidase homolog, at 484,236 to 485,486 _0491 Ga0059261_0492: Ga0059261_0492 - Predicted phosphatase, at 485,500 to 486,855 _0492 Ga0059261_0493: Ga0059261_0493 - hypothetical protein, at 486,939 to 487,226 _0493 Ga0059261_0494: Ga0059261_0494 - ABC-type antimicrobial peptide transport system, ATPase component, at 487,247 to 487,903 _0494 Position (kb) 485 486 487Strain fitness (log2 ratio) -2 -1 0 1 2at 484.672 kb on + strand, within Ga0059261_0491at 484.673 kb on - strand, within Ga0059261_0491at 484.673 kb on - strand, within Ga0059261_0491at 484.733 kb on + strand, within Ga0059261_0491at 484.734 kb on - strand, within Ga0059261_0491at 484.736 kb on + strand, within Ga0059261_0491at 484.736 kb on + strand, within Ga0059261_0491at 484.736 kb on + strand, within Ga0059261_0491at 484.736 kb on + strand, within Ga0059261_0491at 484.737 kb on - strand, within Ga0059261_0491at 484.737 kb on - strand, within Ga0059261_0491at 484.737 kb on - strand, within Ga0059261_0491at 484.737 kb on - strand, within Ga0059261_0491at 484.737 kb on - strand, within Ga0059261_0491at 484.737 kb on - strand, within Ga0059261_0491at 484.737 kb on - strand, within Ga0059261_0491at 484.841 kb on + strand, within Ga0059261_0491at 484.842 kb on - strand, within Ga0059261_0491at 484.842 kb on - strandat 484.920 kb on - strand, within Ga0059261_0491at 484.972 kb on + strand, within Ga0059261_0491at 484.972 kb on + strand, within Ga0059261_0491at 484.972 kb on + strand, within Ga0059261_0491at 484.972 kb on + strand, within Ga0059261_0491at 484.972 kb on + strand, within Ga0059261_0491at 484.973 kb on - strand, within Ga0059261_0491at 484.973 kb on - strand, within Ga0059261_0491at 484.973 kb on - strand, within Ga0059261_0491at 484.973 kb on - strand, within Ga0059261_0491at 484.973 kb on - strand, within Ga0059261_0491at 484.977 kb on + strand, within Ga0059261_0491at 484.978 kb on - strand, within Ga0059261_0491at 484.978 kb on - strand, within Ga0059261_0491at 485.209 kb on + strand, within Ga0059261_0491at 485.209 kb on + strand, within Ga0059261_0491at 485.209 kb on + strand, within Ga0059261_0491at 485.210 kb on - strand, within Ga0059261_0491at 485.292 kb on - strand, within Ga0059261_0491at 485.329 kb on + strand, within Ga0059261_0491at 485.329 kb on + strand, within Ga0059261_0491at 485.329 kb on + strand, within Ga0059261_0491at 485.329 kb on + strand, within Ga0059261_0491at 485.330 kb on - strand, within Ga0059261_0491at 485.330 kb on - strand, within Ga0059261_0491at 485.330 kb on - strand, within Ga0059261_0491at 485.549 kb on + strandat 485.549 kb on + strandat 485.550 kb on - strandat 485.550 kb on - strandat 485.550 kb on - strandat 485.550 kb on - strandat 485.633 kb on + strandat 485.633 kb on + strandat 485.633 kb on + strandat 485.633 kb on + strandat 485.685 kb on + strand, within Ga0059261_0492at 485.685 kb on + strand, within Ga0059261_0492at 485.685 kb on + strand, within Ga0059261_0492at 485.685 kb on + strand, within Ga0059261_0492at 485.685 kb on + strandat 485.685 kb on + strand, within Ga0059261_0492at 485.686 kb on - strandat 485.686 kb on - strand, within Ga0059261_0492at 485.686 kb on - strand, within Ga0059261_0492at 485.687 kb on + strand, within Ga0059261_0492at 485.687 kb on + strand, within Ga0059261_0492at 485.687 kb on + strand, within Ga0059261_0492at 485.687 kb on + strand, within Ga0059261_0492at 485.687 kb on + strand, within Ga0059261_0492at 485.688 kb on - strand, within Ga0059261_0492at 485.688 kb on - strand, within Ga0059261_0492at 485.785 kb on + strandat 485.785 kb on + strandat 485.785 kb on + strand, within Ga0059261_0492at 485.785 kb on + strand, within Ga0059261_0492at 485.785 kb on + strand, within Ga0059261_0492at 485.785 kb on + strand, within Ga0059261_0492at 485.785 kb on + strand, within Ga0059261_0492at 485.785 kb on + strand, within Ga0059261_0492at 485.785 kb on + strand, within Ga0059261_0492at 485.785 kb on + strand, within Ga0059261_0492at 485.786 kb on - strand, within Ga0059261_0492at 485.786 kb on - strand, within Ga0059261_0492at 485.786 kb on - strand, within Ga0059261_0492at 485.786 kb on - strand, within Ga0059261_0492at 485.786 kb on - strand, within Ga0059261_0492at 485.891 kb on + strand, within Ga0059261_0492at 485.891 kb on + strand, within Ga0059261_0492at 485.892 kb on - strand, within Ga0059261_0492at 485.892 kb on - strand, within Ga0059261_0492at 485.892 kb on - strand, within Ga0059261_0492at 485.917 kb on - strand, within Ga0059261_0492at 485.954 kb on + strand, within Ga0059261_0492at 486.018 kb on - strand, within Ga0059261_0492at 486.186 kb on - strand, within Ga0059261_0492at 486.186 kb on - strand, within Ga0059261_0492at 486.420 kb on - strand, within Ga0059261_0492at 486.452 kb on + strand, within Ga0059261_0492at 486.452 kb on + strand, within Ga0059261_0492at 486.452 kb on + strand, within Ga0059261_0492at 486.452 kb on + strand, within Ga0059261_0492at 486.452 kb on + strand, within Ga0059261_0492at 486.453 kb on - strand, within Ga0059261_0492at 486.453 kb on - strand, within Ga0059261_0492at 486.453 kb on - strand, within Ga0059261_0492at 486.506 kb on + strand, within Ga0059261_0492at 486.506 kb on + strand, within Ga0059261_0492at 486.507 kb on - strand, within Ga0059261_0492at 486.613 kb on + strand, within Ga0059261_0492at 486.614 kb on - strand, within Ga0059261_0492at 486.624 kb on + strand, within Ga0059261_0492at 486.692 kb on + strand, within Ga0059261_0492at 486.692 kb on + strand, within Ga0059261_0492at 486.693 kb on - strand, within Ga0059261_0492at 486.693 kb on - strand, within Ga0059261_0492at 486.693 kb on - strand, within Ga0059261_0492at 486.693 kb on - strand, within Ga0059261_0492at 486.919 kb on - strandat 487.162 kb on + strand, within Ga0059261_0493at 487.162 kb on + strand, within Ga0059261_0493at 487.209 kb on + strandat 487.209 kb on + strandat 487.209 kb on + strandat 487.209 kb on + strandat 487.209 kb on + strandat 487.209 kb on + strandat 487.210 kb on - strandat 487.210 kb on - strandat 487.210 kb on - strandat 487.210 kb on - strandat 487.210 kb on - strandat 487.210 kb on - strandat 487.210 kb on - strandat 487.210 kb on - strandat 487.224 kb on + strandat 487.244 kb on + strandat 487.244 kb on + strandat 487.244 kb on + strandat 487.244 kb on + strandat 487.244 kb on + strandat 487.244 kb on + strandat 487.245 kb on - strandat 487.245 kb on - strandat 487.245 kb on - strandat 487.245 kb on - strandat 487.257 kb on + strandat 487.257 kb on + strandat 487.258 kb on - strandat 487.258 kb on - strandat 487.258 kb on - strandat 487.271 kb on - strandat 487.271 kb on - strandat 487.542 kb on + strand, within Ga0059261_0494at 487.543 kb on - strand, within Ga0059261_0494at 487.663 kb on + strand, within Ga0059261_0494

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Per-strain Table

Position Strand Gene LocusTag Fraction Tetracycline 0.001 mg/ml
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484,672 + Ga0059261_0491 0.35 -0.8
484,673 - Ga0059261_0491 0.35 +0.2
484,673 - Ga0059261_0491 0.35 +0.3
484,733 + Ga0059261_0491 0.40 -0.5
484,734 - Ga0059261_0491 0.40 -0.8
484,736 + Ga0059261_0491 0.40 -0.1
484,736 + Ga0059261_0491 0.40 -1.8
484,736 + Ga0059261_0491 0.40 -1.2
484,736 + Ga0059261_0491 0.40 -0.2
484,737 - Ga0059261_0491 0.40 +0.3
484,737 - Ga0059261_0491 0.40 +0.1
484,737 - Ga0059261_0491 0.40 -0.4
484,737 - Ga0059261_0491 0.40 +0.3
484,737 - Ga0059261_0491 0.40 -0.3
484,737 - Ga0059261_0491 0.40 +0.5
484,737 - Ga0059261_0491 0.40 +0.4
484,841 + Ga0059261_0491 0.48 -1.7
484,842 - Ga0059261_0491 0.48 +0.0
484,842 - -0.7
484,920 - Ga0059261_0491 0.55 +0.2
484,972 + Ga0059261_0491 0.59 -0.7
484,972 + Ga0059261_0491 0.59 +1.4
484,972 + Ga0059261_0491 0.59 -0.5
484,972 + Ga0059261_0491 0.59 +0.7
484,972 + Ga0059261_0491 0.59 -0.0
484,973 - Ga0059261_0491 0.59 -2.3
484,973 - Ga0059261_0491 0.59 +0.0
484,973 - Ga0059261_0491 0.59 -2.5
484,973 - Ga0059261_0491 0.59 -1.6
484,973 - Ga0059261_0491 0.59 +0.1
484,977 + Ga0059261_0491 0.59 +0.7
484,978 - Ga0059261_0491 0.59 +0.3
484,978 - Ga0059261_0491 0.59 +0.4
485,209 + Ga0059261_0491 0.78 +0.2
485,209 + Ga0059261_0491 0.78 +0.7
485,209 + Ga0059261_0491 0.78 +0.1
485,210 - Ga0059261_0491 0.78 -0.1
485,292 - Ga0059261_0491 0.84 +0.6
485,329 + Ga0059261_0491 0.87 +0.3
485,329 + Ga0059261_0491 0.87 -0.1
485,329 + Ga0059261_0491 0.87 -0.0
485,329 + Ga0059261_0491 0.87 -0.8
485,330 - Ga0059261_0491 0.87 -0.6
485,330 - Ga0059261_0491 0.87 -0.2
485,330 - Ga0059261_0491 0.87 -0.2
485,549 + +2.1
485,549 + +0.2
485,550 - +0.4
485,550 - -0.1
485,550 - +0.4
485,550 - -0.9
485,633 + -0.7
485,633 + -0.1
485,633 + -0.3
485,633 + +0.2
485,685 + Ga0059261_0492 0.14 +0.1
485,685 + Ga0059261_0492 0.14 +1.1
485,685 + Ga0059261_0492 0.14 +0.4
485,685 + Ga0059261_0492 0.14 -0.3
485,685 + +0.9
485,685 + Ga0059261_0492 0.14 +0.6
485,686 - -0.1
485,686 - Ga0059261_0492 0.14 -1.1
485,686 - Ga0059261_0492 0.14 +0.1
485,687 + Ga0059261_0492 0.14 -1.8
485,687 + Ga0059261_0492 0.14 -0.3
485,687 + Ga0059261_0492 0.14 -0.5
485,687 + Ga0059261_0492 0.14 -0.4
485,687 + Ga0059261_0492 0.14 +0.2
485,688 - Ga0059261_0492 0.14 -0.7
485,688 - Ga0059261_0492 0.14 -0.4
485,785 + -0.1
485,785 + +0.9
485,785 + Ga0059261_0492 0.21 +0.0
485,785 + Ga0059261_0492 0.21 +0.2
485,785 + Ga0059261_0492 0.21 +0.2
485,785 + Ga0059261_0492 0.21 -0.5
485,785 + Ga0059261_0492 0.21 +0.5
485,785 + Ga0059261_0492 0.21 -0.3
485,785 + Ga0059261_0492 0.21 -0.8
485,785 + Ga0059261_0492 0.21 -0.0
485,786 - Ga0059261_0492 0.21 +0.9
485,786 - Ga0059261_0492 0.21 -1.9
485,786 - Ga0059261_0492 0.21 -0.2
485,786 - Ga0059261_0492 0.21 +0.6
485,786 - Ga0059261_0492 0.21 +0.3
485,891 + Ga0059261_0492 0.29 -1.1
485,891 + Ga0059261_0492 0.29 -0.0
485,892 - Ga0059261_0492 0.29 -0.2
485,892 - Ga0059261_0492 0.29 +0.1
485,892 - Ga0059261_0492 0.29 -0.1
485,917 - Ga0059261_0492 0.31 -1.5
485,954 + Ga0059261_0492 0.33 +0.1
486,018 - Ga0059261_0492 0.38 -0.3
486,186 - Ga0059261_0492 0.51 -0.5
486,186 - Ga0059261_0492 0.51 -0.0
486,420 - Ga0059261_0492 0.68 -1.5
486,452 + Ga0059261_0492 0.70 +0.1
486,452 + Ga0059261_0492 0.70 -0.1
486,452 + Ga0059261_0492 0.70 -0.9
486,452 + Ga0059261_0492 0.70 -1.3
486,452 + Ga0059261_0492 0.70 -0.3
486,453 - Ga0059261_0492 0.70 -0.3
486,453 - Ga0059261_0492 0.70 -0.1
486,453 - Ga0059261_0492 0.70 -0.5
486,506 + Ga0059261_0492 0.74 -0.2
486,506 + Ga0059261_0492 0.74 -1.0
486,507 - Ga0059261_0492 0.74 -0.2
486,613 + Ga0059261_0492 0.82 -0.7
486,614 - Ga0059261_0492 0.82 -0.1
486,624 + Ga0059261_0492 0.83 +0.1
486,692 + Ga0059261_0492 0.88 -0.4
486,692 + Ga0059261_0492 0.88 -0.5
486,693 - Ga0059261_0492 0.88 -0.2
486,693 - Ga0059261_0492 0.88 +0.0
486,693 - Ga0059261_0492 0.88 -0.5
486,693 - Ga0059261_0492 0.88 +0.8
486,919 - -0.2
487,162 + Ga0059261_0493 0.77 -0.5
487,162 + Ga0059261_0493 0.77 -0.1
487,209 + -0.4
487,209 + -0.7
487,209 + +0.3
487,209 + -0.0
487,209 + -0.5
487,209 + +0.6
487,210 - +0.5
487,210 - -0.3
487,210 - -0.6
487,210 - +0.0
487,210 - -0.1
487,210 - -0.3
487,210 - +0.6
487,210 - +0.7
487,224 + -1.1
487,244 + +0.9
487,244 + +1.9
487,244 + -0.1
487,244 + -0.2
487,244 + -1.3
487,244 + +0.7
487,245 - -0.1
487,245 - -0.1
487,245 - -0.2
487,245 - +0.2
487,257 + -0.3
487,257 + -1.9
487,258 - -0.1
487,258 - -0.3
487,258 - +0.1
487,271 - -0.0
487,271 - +0.9
487,542 + Ga0059261_0494 0.45 +0.2
487,543 - Ga0059261_0494 0.45 -0.1
487,663 + Ga0059261_0494 0.63 -1.1

Or see this region's nucleotide sequence