Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS18330 and ABID97_RS18335 are separated by 619 nucleotides ABID97_RS18335 and ABID97_RS18340 are separated by 235 nucleotides ABID97_RS18340 and ABID97_RS18345 overlap by 4 nucleotides
ABID97_RS18330: ABID97_RS18330 - hypothetical protein, at 3,790,983 to 3,791,477
_RS18330
ABID97_RS18335: ABID97_RS18335 - hypothetical protein, at 3,792,097 to 3,792,462
_RS18335
ABID97_RS18340: ABID97_RS18340 - hypothetical protein, at 3,792,698 to 3,792,967
_RS18340
ABID97_RS18345: ABID97_RS18345 - DUF6876 family protein, at 3,792,964 to 3,793,362
_RS18345
Position (kb)
3792
3793 Strain fitness (log2 ratio)
-1
0
1 at 3791.115 kb on + strand, within ABID97_RS18330 at 3791.116 kb on - strand, within ABID97_RS18330 at 3791.214 kb on + strand, within ABID97_RS18330 at 3791.214 kb on + strand, within ABID97_RS18330 at 3791.389 kb on + strand, within ABID97_RS18330 at 3791.389 kb on + strand, within ABID97_RS18330 at 3791.490 kb on + strand at 3791.490 kb on + strand at 3791.937 kb on + strand at 3791.938 kb on - strand at 3792.133 kb on + strand at 3792.143 kb on - strand, within ABID97_RS18335 at 3792.143 kb on - strand, within ABID97_RS18335 at 3792.746 kb on + strand, within ABID97_RS18340 at 3792.747 kb on - strand, within ABID97_RS18340 at 3793.050 kb on - strand, within ABID97_RS18345
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 3,791,115 + ABID97_RS18330 0.27 -0.9 3,791,116 - ABID97_RS18330 0.27 -0.2 3,791,214 + ABID97_RS18330 0.47 -0.3 3,791,214 + ABID97_RS18330 0.47 -0.0 3,791,389 + ABID97_RS18330 0.82 +0.2 3,791,389 + ABID97_RS18330 0.82 -0.3 3,791,490 + -0.3 3,791,490 + +1.0 3,791,937 + +0.8 3,791,938 - -1.0 3,792,133 + -0.8 3,792,143 - ABID97_RS18335 0.13 +0.6 3,792,143 - ABID97_RS18335 0.13 -1.1 3,792,746 + ABID97_RS18340 0.18 -0.5 3,792,747 - ABID97_RS18340 0.18 +0.2 3,793,050 - ABID97_RS18345 0.22 -0.4
Or see this region's nucleotide sequence