Strain Fitness in Variovorax sp. OAS795 around ABID97_RS18335

Experiment: butyrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS18330 and ABID97_RS18335 are separated by 619 nucleotidesABID97_RS18335 and ABID97_RS18340 are separated by 235 nucleotidesABID97_RS18340 and ABID97_RS18345 overlap by 4 nucleotides ABID97_RS18330: ABID97_RS18330 - hypothetical protein, at 3,790,983 to 3,791,477 _RS18330 ABID97_RS18335: ABID97_RS18335 - hypothetical protein, at 3,792,097 to 3,792,462 _RS18335 ABID97_RS18340: ABID97_RS18340 - hypothetical protein, at 3,792,698 to 3,792,967 _RS18340 ABID97_RS18345: ABID97_RS18345 - DUF6876 family protein, at 3,792,964 to 3,793,362 _RS18345 Position (kb) 3792 3793Strain fitness (log2 ratio) -1 0 1at 3791.115 kb on + strand, within ABID97_RS18330at 3791.116 kb on - strand, within ABID97_RS18330at 3791.214 kb on + strand, within ABID97_RS18330at 3791.214 kb on + strand, within ABID97_RS18330at 3791.389 kb on + strand, within ABID97_RS18330at 3791.389 kb on + strand, within ABID97_RS18330at 3791.490 kb on + strandat 3791.490 kb on + strandat 3791.937 kb on + strandat 3791.938 kb on - strandat 3792.133 kb on + strandat 3792.143 kb on - strand, within ABID97_RS18335at 3792.143 kb on - strand, within ABID97_RS18335at 3792.746 kb on + strand, within ABID97_RS18340at 3792.747 kb on - strand, within ABID97_RS18340at 3793.050 kb on - strand, within ABID97_RS18345

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
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3,791,115 + ABID97_RS18330 0.27 -0.9
3,791,116 - ABID97_RS18330 0.27 -0.2
3,791,214 + ABID97_RS18330 0.47 -0.3
3,791,214 + ABID97_RS18330 0.47 -0.0
3,791,389 + ABID97_RS18330 0.82 +0.2
3,791,389 + ABID97_RS18330 0.82 -0.3
3,791,490 + -0.3
3,791,490 + +1.0
3,791,937 + +0.8
3,791,938 - -1.0
3,792,133 + -0.8
3,792,143 - ABID97_RS18335 0.13 +0.6
3,792,143 - ABID97_RS18335 0.13 -1.1
3,792,746 + ABID97_RS18340 0.18 -0.5
3,792,747 - ABID97_RS18340 0.18 +0.2
3,793,050 - ABID97_RS18345 0.22 -0.4

Or see this region's nucleotide sequence