Strain Fitness in Variovorax sp. OAS795 around ABID97_RS09440

Experiment: butyrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS09425 and ABID97_RS09430 are separated by 22 nucleotidesABID97_RS09430 and ABID97_RS09435 overlap by 4 nucleotidesABID97_RS09435 and ABID97_RS09440 overlap by 4 nucleotidesABID97_RS09440 and ABID97_RS09445 overlap by 4 nucleotides ABID97_RS09425: ABID97_RS09425 - XdhC family protein, at 1,981,226 to 1,982,248 _RS09425 ABID97_RS09430: ABID97_RS09430 - monovalent cation/H(+) antiporter subunit G, at 1,982,271 to 1,982,630 _RS09430 ABID97_RS09435: ABID97_RS09435 - K+/H+ antiporter subunit F, at 1,982,627 to 1,982,905 _RS09435 ABID97_RS09440: ABID97_RS09440 - Na+/H+ antiporter subunit E, at 1,982,902 to 1,983,393 _RS09440 ABID97_RS09445: ABID97_RS09445 - monovalent cation/H+ antiporter subunit D, at 1,983,390 to 1,985,096 _RS09445 Position (kb) 1982 1983 1984Strain fitness (log2 ratio) -1 0 1 2at 1981.997 kb on + strand, within ABID97_RS09425at 1982.111 kb on + strand, within ABID97_RS09425at 1982.112 kb on - strand, within ABID97_RS09425at 1982.112 kb on - strand, within ABID97_RS09425at 1982.434 kb on + strand, within ABID97_RS09430at 1982.574 kb on + strand, within ABID97_RS09430at 1982.734 kb on - strand, within ABID97_RS09435at 1982.775 kb on + strand, within ABID97_RS09435at 1982.775 kb on + strand, within ABID97_RS09435at 1984.033 kb on + strand, within ABID97_RS09445at 1984.033 kb on + strand, within ABID97_RS09445at 1984.033 kb on + strand, within ABID97_RS09445at 1984.034 kb on - strand, within ABID97_RS09445at 1984.034 kb on - strand, within ABID97_RS09445at 1984.036 kb on + strand, within ABID97_RS09445at 1984.037 kb on - strand, within ABID97_RS09445at 1984.037 kb on - strand, within ABID97_RS09445at 1984.271 kb on - strand, within ABID97_RS09445at 1984.271 kb on - strand, within ABID97_RS09445at 1984.330 kb on + strand, within ABID97_RS09445at 1984.331 kb on - strand, within ABID97_RS09445

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
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1,981,997 + ABID97_RS09425 0.75 -0.3
1,982,111 + ABID97_RS09425 0.87 -0.0
1,982,112 - ABID97_RS09425 0.87 -0.9
1,982,112 - ABID97_RS09425 0.87 -1.0
1,982,434 + ABID97_RS09430 0.45 +1.2
1,982,574 + ABID97_RS09430 0.84 +2.7
1,982,734 - ABID97_RS09435 0.38 +0.3
1,982,775 + ABID97_RS09435 0.53 -0.8
1,982,775 + ABID97_RS09435 0.53 +0.6
1,984,033 + ABID97_RS09445 0.38 +0.8
1,984,033 + ABID97_RS09445 0.38 -0.2
1,984,033 + ABID97_RS09445 0.38 +0.4
1,984,034 - ABID97_RS09445 0.38 -0.6
1,984,034 - ABID97_RS09445 0.38 -0.1
1,984,036 + ABID97_RS09445 0.38 +0.5
1,984,037 - ABID97_RS09445 0.38 -0.2
1,984,037 - ABID97_RS09445 0.38 -0.2
1,984,271 - ABID97_RS09445 0.52 -1.0
1,984,271 - ABID97_RS09445 0.52 -0.3
1,984,330 + ABID97_RS09445 0.55 +1.8
1,984,331 - ABID97_RS09445 0.55 -0.9

Or see this region's nucleotide sequence