Strain Fitness in Variovorax sp. OAS795 around ABID97_RS00135

Experiment: butyrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS00130 and ABID97_RS00135 are separated by 120 nucleotidesABID97_RS00135 and ABID97_RS00140 are separated by 19 nucleotidesABID97_RS00140 and ABID97_RS00145 are separated by 86 nucleotides ABID97_RS00130: ABID97_RS00130 - branched-chain amino acid ABC transporter substrate-binding protein, at 30,195 to 31,460 _RS00130 ABID97_RS00135: ABID97_RS00135 - cytochrome P450, at 31,581 to 34,805 _RS00135 ABID97_RS00140: ABID97_RS00140 - alpha/beta hydrolase, at 34,825 to 35,598 _RS00140 ABID97_RS00145: ABID97_RS00145 - TetR/AcrR family transcriptional regulator, at 35,685 to 36,320 _RS00145 Position (kb) 31 32 33 34 35Strain fitness (log2 ratio) -2 -1 0 1 2 3at 30.699 kb on + strand, within ABID97_RS00130at 30.699 kb on + strand, within ABID97_RS00130at 30.699 kb on + strand, within ABID97_RS00130at 30.699 kb on + strand, within ABID97_RS00130at 30.699 kb on + strand, within ABID97_RS00130at 30.700 kb on - strand, within ABID97_RS00130at 30.733 kb on - strand, within ABID97_RS00130at 30.733 kb on - strand, within ABID97_RS00130at 30.871 kb on - strand, within ABID97_RS00130at 30.982 kb on - strand, within ABID97_RS00130at 31.119 kb on + strand, within ABID97_RS00130at 31.120 kb on - strand, within ABID97_RS00130at 31.120 kb on - strand, within ABID97_RS00130at 31.120 kb on - strand, within ABID97_RS00130at 31.402 kb on - strandat 31.484 kb on - strandat 31.537 kb on - strandat 31.537 kb on - strandat 31.935 kb on + strand, within ABID97_RS00135at 32.036 kb on + strand, within ABID97_RS00135at 32.037 kb on - strand, within ABID97_RS00135at 32.037 kb on - strand, within ABID97_RS00135at 32.220 kb on + strand, within ABID97_RS00135at 32.221 kb on - strand, within ABID97_RS00135at 32.221 kb on - strand, within ABID97_RS00135at 32.221 kb on - strand, within ABID97_RS00135at 32.304 kb on + strand, within ABID97_RS00135at 32.304 kb on + strand, within ABID97_RS00135at 32.304 kb on + strand, within ABID97_RS00135at 32.305 kb on - strand, within ABID97_RS00135at 32.305 kb on - strand, within ABID97_RS00135at 32.305 kb on - strand, within ABID97_RS00135at 32.430 kb on + strand, within ABID97_RS00135at 32.431 kb on - strand, within ABID97_RS00135at 32.431 kb on - strand, within ABID97_RS00135at 32.520 kb on + strand, within ABID97_RS00135at 32.520 kb on + strand, within ABID97_RS00135at 32.520 kb on + strand, within ABID97_RS00135at 32.521 kb on - strand, within ABID97_RS00135at 32.521 kb on - strand, within ABID97_RS00135at 32.521 kb on - strand, within ABID97_RS00135at 32.544 kb on + strand, within ABID97_RS00135at 32.544 kb on + strand, within ABID97_RS00135at 32.544 kb on + strand, within ABID97_RS00135at 32.545 kb on - strand, within ABID97_RS00135at 32.898 kb on + strand, within ABID97_RS00135at 32.899 kb on - strand, within ABID97_RS00135at 32.899 kb on - strand, within ABID97_RS00135at 33.183 kb on + strand, within ABID97_RS00135at 33.235 kb on - strand, within ABID97_RS00135at 33.235 kb on - strand, within ABID97_RS00135at 33.357 kb on + strand, within ABID97_RS00135at 33.357 kb on + strand, within ABID97_RS00135at 33.357 kb on + strand, within ABID97_RS00135at 33.358 kb on - strand, within ABID97_RS00135at 33.556 kb on - strand, within ABID97_RS00135at 33.726 kb on + strand, within ABID97_RS00135at 33.726 kb on + strand, within ABID97_RS00135at 33.727 kb on - strand, within ABID97_RS00135at 33.727 kb on - strand, within ABID97_RS00135at 34.146 kb on + strand, within ABID97_RS00135at 34.147 kb on - strand, within ABID97_RS00135at 34.149 kb on + strand, within ABID97_RS00135at 34.150 kb on - strand, within ABID97_RS00135at 34.266 kb on + strand, within ABID97_RS00135at 34.266 kb on + strand, within ABID97_RS00135at 34.267 kb on - strand, within ABID97_RS00135at 34.503 kb on + strandat 34.504 kb on - strandat 34.504 kb on - strandat 34.587 kb on + strandat 34.587 kb on + strandat 34.587 kb on + strandat 34.587 kb on + strandat 34.588 kb on - strandat 34.588 kb on - strandat 34.588 kb on - strandat 34.588 kb on - strandat 34.588 kb on - strandat 34.588 kb on - strandat 34.588 kb on - strandat 34.656 kb on + strandat 34.656 kb on + strandat 34.656 kb on + strandat 34.656 kb on + strandat 34.657 kb on - strandat 34.803 kb on + strandat 34.928 kb on + strand, within ABID97_RS00140at 34.928 kb on + strand, within ABID97_RS00140at 34.928 kb on + strand, within ABID97_RS00140at 34.928 kb on + strand, within ABID97_RS00140at 34.929 kb on - strand, within ABID97_RS00140at 34.929 kb on - strand, within ABID97_RS00140at 34.929 kb on - strand, within ABID97_RS00140at 35.135 kb on + strand, within ABID97_RS00140at 35.136 kb on - strand, within ABID97_RS00140at 35.240 kb on + strand, within ABID97_RS00140at 35.240 kb on + strand, within ABID97_RS00140at 35.240 kb on + strand, within ABID97_RS00140at 35.240 kb on + strand, within ABID97_RS00140at 35.240 kb on + strand, within ABID97_RS00140at 35.399 kb on + strand, within ABID97_RS00140at 35.400 kb on - strand, within ABID97_RS00140at 35.629 kb on + strandat 35.630 kb on - strandat 35.630 kb on - strandat 35.630 kb on - strandat 35.695 kb on + strandat 35.695 kb on + strandat 35.695 kb on + strandat 35.696 kb on - strandat 35.711 kb on - strandat 35.711 kb on - strandat 35.719 kb on + strandat 35.719 kb on + strandat 35.719 kb on + strandat 35.720 kb on - strandat 35.720 kb on - strandat 35.720 kb on - strandat 35.768 kb on - strand, within ABID97_RS00145

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
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30,699 + ABID97_RS00130 0.40 +0.5
30,699 + ABID97_RS00130 0.40 +0.8
30,699 + ABID97_RS00130 0.40 +0.3
30,699 + ABID97_RS00130 0.40 -0.2
30,699 + ABID97_RS00130 0.40 -0.2
30,700 - ABID97_RS00130 0.40 -0.4
30,733 - ABID97_RS00130 0.42 -0.3
30,733 - ABID97_RS00130 0.42 -0.6
30,871 - ABID97_RS00130 0.53 +0.9
30,982 - ABID97_RS00130 0.62 -0.2
31,119 + ABID97_RS00130 0.73 -0.7
31,120 - ABID97_RS00130 0.73 -0.1
31,120 - ABID97_RS00130 0.73 +2.1
31,120 - ABID97_RS00130 0.73 +0.0
31,402 - -0.7
31,484 - -1.1
31,537 - +0.3
31,537 - +0.1
31,935 + ABID97_RS00135 0.11 -0.1
32,036 + ABID97_RS00135 0.14 -0.1
32,037 - ABID97_RS00135 0.14 +2.5
32,037 - ABID97_RS00135 0.14 +0.8
32,220 + ABID97_RS00135 0.20 -0.3
32,221 - ABID97_RS00135 0.20 +0.0
32,221 - ABID97_RS00135 0.20 -1.2
32,221 - ABID97_RS00135 0.20 -0.0
32,304 + ABID97_RS00135 0.22 +0.1
32,304 + ABID97_RS00135 0.22 -0.5
32,304 + ABID97_RS00135 0.22 +1.4
32,305 - ABID97_RS00135 0.22 -0.6
32,305 - ABID97_RS00135 0.22 -0.3
32,305 - ABID97_RS00135 0.22 +0.5
32,430 + ABID97_RS00135 0.26 -0.4
32,431 - ABID97_RS00135 0.26 +0.2
32,431 - ABID97_RS00135 0.26 -0.7
32,520 + ABID97_RS00135 0.29 -0.0
32,520 + ABID97_RS00135 0.29 -0.1
32,520 + ABID97_RS00135 0.29 +0.5
32,521 - ABID97_RS00135 0.29 +0.4
32,521 - ABID97_RS00135 0.29 +0.7
32,521 - ABID97_RS00135 0.29 -0.3
32,544 + ABID97_RS00135 0.30 -1.7
32,544 + ABID97_RS00135 0.30 -0.5
32,544 + ABID97_RS00135 0.30 +0.1
32,545 - ABID97_RS00135 0.30 -0.2
32,898 + ABID97_RS00135 0.41 +2.4
32,899 - ABID97_RS00135 0.41 -0.2
32,899 - ABID97_RS00135 0.41 +0.0
33,183 + ABID97_RS00135 0.50 -1.9
33,235 - ABID97_RS00135 0.51 +1.0
33,235 - ABID97_RS00135 0.51 -0.5
33,357 + ABID97_RS00135 0.55 -0.5
33,357 + ABID97_RS00135 0.55 -0.4
33,357 + ABID97_RS00135 0.55 -0.6
33,358 - ABID97_RS00135 0.55 -0.0
33,556 - ABID97_RS00135 0.61 +0.6
33,726 + ABID97_RS00135 0.67 +0.4
33,726 + ABID97_RS00135 0.67 +2.9
33,727 - ABID97_RS00135 0.67 -0.9
33,727 - ABID97_RS00135 0.67 +0.9
34,146 + ABID97_RS00135 0.80 +0.8
34,147 - ABID97_RS00135 0.80 -0.3
34,149 + ABID97_RS00135 0.80 +1.5
34,150 - ABID97_RS00135 0.80 +1.7
34,266 + ABID97_RS00135 0.83 +2.2
34,266 + ABID97_RS00135 0.83 +1.2
34,267 - ABID97_RS00135 0.83 -0.7
34,503 + -0.5
34,504 - -1.0
34,504 - -0.4
34,587 + +0.4
34,587 + -0.4
34,587 + +0.2
34,587 + +0.0
34,588 - +0.7
34,588 - +1.2
34,588 - -0.1
34,588 - +0.3
34,588 - -0.4
34,588 - -0.2
34,588 - +1.5
34,656 + -1.2
34,656 + -0.7
34,656 + +1.4
34,656 + -0.8
34,657 - -0.2
34,803 + -0.0
34,928 + ABID97_RS00140 0.13 +0.1
34,928 + ABID97_RS00140 0.13 -0.4
34,928 + ABID97_RS00140 0.13 -0.4
34,928 + ABID97_RS00140 0.13 -0.4
34,929 - ABID97_RS00140 0.13 +0.2
34,929 - ABID97_RS00140 0.13 -0.4
34,929 - ABID97_RS00140 0.13 -0.3
35,135 + ABID97_RS00140 0.40 +0.1
35,136 - ABID97_RS00140 0.40 -0.8
35,240 + ABID97_RS00140 0.54 -0.1
35,240 + ABID97_RS00140 0.54 -0.1
35,240 + ABID97_RS00140 0.54 -1.1
35,240 + ABID97_RS00140 0.54 -0.7
35,240 + ABID97_RS00140 0.54 +1.2
35,399 + ABID97_RS00140 0.74 +0.8
35,400 - ABID97_RS00140 0.74 -0.1
35,629 + -1.3
35,630 - -0.7
35,630 - +0.3
35,630 - +0.1
35,695 + -0.6
35,695 + +0.5
35,695 + -0.7
35,696 - +0.5
35,711 - -0.1
35,711 - -1.1
35,719 + +0.5
35,719 + -0.3
35,719 + +0.2
35,720 - -0.7
35,720 - +2.0
35,720 - +0.2
35,768 - ABID97_RS00145 0.13 -0.6

Or see this region's nucleotide sequence