Experiment: NLDM_metabolites (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS05165 and EX31_RS05170 are separated by 181 nucleotides EX31_RS05170 and EX31_RS05175 are separated by 176 nucleotides
EX31_RS05165: EX31_RS05165 - oligopeptidase A, at 169,209 to 171,269
_RS05165
EX31_RS05170: EX31_RS05170 - 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ, at 171,451 to 172,293
_RS05170
EX31_RS05175: EX31_RS05175 - glutathione-disulfide reductase, at 172,470 to 173,822
_RS05175
Position (kb) 171
172
173 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 170.546 kb on - strand, within EX31_RS05165 at 170.578 kb on + strand, within EX31_RS05165 at 170.579 kb on - strand, within EX31_RS05165 at 170.579 kb on - strand, within EX31_RS05165 at 170.579 kb on - strand, within EX31_RS05165 at 170.597 kb on - strand, within EX31_RS05165 at 170.597 kb on - strand, within EX31_RS05165 at 170.597 kb on - strand, within EX31_RS05165 at 170.597 kb on - strand, within EX31_RS05165 at 170.755 kb on + strand, within EX31_RS05165 at 170.755 kb on + strand, within EX31_RS05165 at 170.755 kb on + strand, within EX31_RS05165 at 170.755 kb on + strand, within EX31_RS05165 at 170.755 kb on + strand, within EX31_RS05165 at 170.755 kb on + strand, within EX31_RS05165 at 170.755 kb on + strand, within EX31_RS05165 at 170.756 kb on - strand, within EX31_RS05165 at 170.756 kb on - strand, within EX31_RS05165 at 170.756 kb on - strand, within EX31_RS05165 at 170.756 kb on - strand, within EX31_RS05165 at 170.914 kb on - strand, within EX31_RS05165 at 170.995 kb on + strand, within EX31_RS05165 at 170.996 kb on - strand, within EX31_RS05165 at 171.032 kb on + strand, within EX31_RS05165 at 171.032 kb on + strand, within EX31_RS05165 at 171.033 kb on - strand, within EX31_RS05165 at 171.033 kb on - strand, within EX31_RS05165 at 171.033 kb on - strand, within EX31_RS05165 at 171.033 kb on - strand, within EX31_RS05165 at 171.110 kb on + strand at 171.110 kb on + strand at 171.111 kb on - strand at 171.111 kb on - strand at 171.111 kb on - strand at 171.111 kb on - strand at 171.111 kb on - strand at 171.111 kb on - strand at 171.111 kb on - strand at 171.111 kb on - strand at 171.111 kb on - strand at 171.112 kb on + strand at 171.113 kb on - strand at 171.113 kb on - strand at 171.113 kb on - strand at 171.164 kb on + strand at 171.188 kb on + strand at 171.188 kb on + strand at 171.188 kb on + strand at 171.188 kb on + strand at 171.188 kb on + strand at 171.188 kb on + strand at 171.188 kb on + strand at 171.189 kb on - strand at 171.189 kb on - strand at 171.189 kb on - strand at 171.189 kb on - strand at 171.189 kb on - strand at 171.189 kb on - strand at 171.189 kb on - strand at 171.189 kb on - strand at 171.189 kb on - strand at 171.189 kb on - strand at 171.189 kb on - strand at 171.189 kb on - strand at 171.189 kb on - strand at 171.189 kb on - strand at 171.189 kb on - strand at 171.285 kb on + strand at 171.285 kb on + strand at 171.288 kb on + strand at 171.289 kb on - strand at 171.343 kb on + strand at 171.344 kb on - strand at 171.354 kb on + strand at 171.354 kb on + strand at 171.354 kb on + strand at 171.354 kb on + strand at 171.354 kb on + strand at 171.354 kb on + strand at 171.354 kb on + strand at 171.354 kb on + strand at 171.354 kb on + strand at 171.355 kb on - strand at 171.355 kb on - strand at 171.355 kb on - strand at 171.355 kb on - strand at 171.355 kb on - strand at 171.355 kb on - strand at 171.355 kb on - strand at 171.355 kb on - strand at 171.378 kb on - strand at 171.406 kb on + strand at 171.407 kb on - strand at 171.413 kb on + strand at 171.497 kb on + strand at 171.563 kb on - strand, within EX31_RS05170 at 171.563 kb on - strand, within EX31_RS05170 at 171.621 kb on + strand, within EX31_RS05170 at 171.622 kb on - strand, within EX31_RS05170 at 171.670 kb on - strand, within EX31_RS05170 at 171.691 kb on + strand, within EX31_RS05170 at 171.691 kb on + strand, within EX31_RS05170 at 171.691 kb on + strand, within EX31_RS05170 at 171.691 kb on + strand, within EX31_RS05170 at 171.691 kb on + strand, within EX31_RS05170 at 171.691 kb on + strand, within EX31_RS05170 at 171.691 kb on + strand, within EX31_RS05170 at 171.691 kb on + strand, within EX31_RS05170 at 171.691 kb on + strand, within EX31_RS05170 at 171.691 kb on + strand, within EX31_RS05170 at 171.691 kb on + strand, within EX31_RS05170 at 171.691 kb on + strand, within EX31_RS05170 at 171.691 kb on + strand, within EX31_RS05170 at 171.691 kb on + strand, within EX31_RS05170 at 171.691 kb on + strand, within EX31_RS05170 at 171.691 kb on + strand, within EX31_RS05170 at 171.692 kb on - strand, within EX31_RS05170 at 171.692 kb on - strand, within EX31_RS05170 at 171.692 kb on - strand, within EX31_RS05170 at 171.692 kb on - strand, within EX31_RS05170 at 171.692 kb on - strand, within EX31_RS05170 at 171.692 kb on - strand, within EX31_RS05170 at 171.692 kb on - strand, within EX31_RS05170 at 171.692 kb on - strand, within EX31_RS05170 at 171.692 kb on - strand, within EX31_RS05170 at 171.692 kb on - strand, within EX31_RS05170 at 171.692 kb on - strand, within EX31_RS05170 at 171.693 kb on + strand, within EX31_RS05170 at 171.693 kb on + strand, within EX31_RS05170 at 171.693 kb on + strand, within EX31_RS05170 at 171.693 kb on + strand, within EX31_RS05170 at 171.693 kb on + strand, within EX31_RS05170 at 171.693 kb on + strand, within EX31_RS05170 at 171.693 kb on + strand, within EX31_RS05170 at 171.693 kb on + strand, within EX31_RS05170 at 171.694 kb on - strand, within EX31_RS05170 at 171.694 kb on - strand, within EX31_RS05170 at 171.694 kb on - strand, within EX31_RS05170 at 171.694 kb on - strand, within EX31_RS05170 at 171.694 kb on - strand, within EX31_RS05170 at 171.694 kb on - strand, within EX31_RS05170 at 171.694 kb on - strand, within EX31_RS05170 at 171.694 kb on - strand, within EX31_RS05170 at 171.694 kb on - strand, within EX31_RS05170 at 171.694 kb on - strand, within EX31_RS05170 at 171.694 kb on - strand, within EX31_RS05170 at 171.694 kb on - strand, within EX31_RS05170 at 171.694 kb on - strand, within EX31_RS05170 at 171.736 kb on + strand, within EX31_RS05170 at 171.736 kb on + strand, within EX31_RS05170 at 171.950 kb on - strand, within EX31_RS05170 at 171.980 kb on + strand, within EX31_RS05170 at 171.980 kb on + strand, within EX31_RS05170 at 171.980 kb on + strand, within EX31_RS05170 at 171.981 kb on - strand, within EX31_RS05170 at 171.981 kb on - strand, within EX31_RS05170 at 171.981 kb on - strand, within EX31_RS05170 at 171.981 kb on - strand, within EX31_RS05170 at 172.000 kb on + strand, within EX31_RS05170 at 172.024 kb on + strand, within EX31_RS05170 at 172.024 kb on + strand, within EX31_RS05170 at 172.024 kb on + strand, within EX31_RS05170 at 172.024 kb on + strand, within EX31_RS05170 at 172.025 kb on - strand, within EX31_RS05170 at 172.025 kb on - strand, within EX31_RS05170 at 172.025 kb on - strand, within EX31_RS05170 at 172.105 kb on - strand, within EX31_RS05170 at 172.105 kb on - strand, within EX31_RS05170 at 172.217 kb on + strand at 172.217 kb on + strand at 172.218 kb on - strand at 172.218 kb on - strand at 172.291 kb on + strand at 172.291 kb on + strand at 172.291 kb on + strand at 172.291 kb on + strand at 172.291 kb on + strand at 172.291 kb on + strand at 172.291 kb on + strand at 172.291 kb on + strand at 172.291 kb on + strand at 172.291 kb on + strand at 172.292 kb on - strand at 172.292 kb on - strand at 172.292 kb on - strand at 172.292 kb on - strand at 172.292 kb on - strand at 172.296 kb on - strand at 172.327 kb on - strand at 172.347 kb on + strand at 172.413 kb on + strand at 172.482 kb on + strand at 172.482 kb on + strand at 172.483 kb on - strand at 172.488 kb on + strand at 172.488 kb on + strand at 172.488 kb on + strand at 172.488 kb on + strand at 172.488 kb on + strand at 172.488 kb on + strand at 172.489 kb on - strand at 172.489 kb on - strand at 172.489 kb on - strand at 172.489 kb on - strand at 172.489 kb on - strand at 172.489 kb on - strand at 172.545 kb on + strand at 172.545 kb on + strand at 172.545 kb on + strand at 172.546 kb on - strand at 172.546 kb on - strand at 172.546 kb on - strand at 172.575 kb on - strand at 172.665 kb on + strand, within EX31_RS05175 at 172.665 kb on + strand, within EX31_RS05175 at 172.666 kb on - strand, within EX31_RS05175 at 172.688 kb on + strand, within EX31_RS05175 at 172.740 kb on + strand, within EX31_RS05175 at 172.740 kb on + strand, within EX31_RS05175 at 172.740 kb on + strand, within EX31_RS05175 at 172.741 kb on - strand, within EX31_RS05175 at 172.757 kb on + strand, within EX31_RS05175 at 172.757 kb on + strand, within EX31_RS05175 at 172.765 kb on - strand, within EX31_RS05175 at 172.787 kb on + strand, within EX31_RS05175 at 172.833 kb on - strand, within EX31_RS05175 at 172.833 kb on - strand, within EX31_RS05175 at 172.833 kb on - strand, within EX31_RS05175 at 172.833 kb on - strand, within EX31_RS05175 at 172.998 kb on + strand, within EX31_RS05175 at 172.998 kb on + strand, within EX31_RS05175 at 172.998 kb on + strand, within EX31_RS05175 at 173.000 kb on + strand, within EX31_RS05175 at 173.147 kb on + strand, within EX31_RS05175 at 173.147 kb on + strand, within EX31_RS05175 at 173.148 kb on - strand, within EX31_RS05175
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_metabolites (C) remove 170,546 - EX31_RS05165 0.65 -1.4 170,578 + EX31_RS05165 0.66 +1.0 170,579 - EX31_RS05165 0.66 +0.6 170,579 - EX31_RS05165 0.66 +0.1 170,579 - EX31_RS05165 0.66 -0.4 170,597 - EX31_RS05165 0.67 +0.9 170,597 - EX31_RS05165 0.67 +0.7 170,597 - EX31_RS05165 0.67 -0.1 170,597 - EX31_RS05165 0.67 -0.6 170,755 + EX31_RS05165 0.75 -1.3 170,755 + EX31_RS05165 0.75 -0.6 170,755 + EX31_RS05165 0.75 +0.7 170,755 + EX31_RS05165 0.75 -1.8 170,755 + EX31_RS05165 0.75 +0.9 170,755 + EX31_RS05165 0.75 -2.9 170,755 + EX31_RS05165 0.75 -2.9 170,756 - EX31_RS05165 0.75 +0.3 170,756 - EX31_RS05165 0.75 +1.7 170,756 - EX31_RS05165 0.75 -0.2 170,756 - EX31_RS05165 0.75 -0.6 170,914 - EX31_RS05165 0.83 +0.7 170,995 + EX31_RS05165 0.87 +1.1 170,996 - EX31_RS05165 0.87 -0.9 171,032 + EX31_RS05165 0.88 +0.7 171,032 + EX31_RS05165 0.88 +2.3 171,033 - EX31_RS05165 0.89 +1.1 171,033 - EX31_RS05165 0.89 -1.7 171,033 - EX31_RS05165 0.89 +0.3 171,033 - EX31_RS05165 0.89 +1.2 171,110 + -0.1 171,110 + -1.2 171,111 - -0.3 171,111 - +0.5 171,111 - +0.1 171,111 - -0.2 171,111 - -1.4 171,111 - -0.2 171,111 - -1.5 171,111 - +0.8 171,111 - -1.0 171,112 + +0.2 171,113 - -0.3 171,113 - -1.0 171,113 - +0.2 171,164 + +0.5 171,188 + -1.9 171,188 + -0.1 171,188 + -0.5 171,188 + +0.4 171,188 + -0.6 171,188 + +2.3 171,188 + +0.5 171,189 - -0.9 171,189 - +2.1 171,189 - -0.0 171,189 - +0.9 171,189 - +0.1 171,189 - -0.9 171,189 - +1.5 171,189 - -0.6 171,189 - +1.5 171,189 - -0.2 171,189 - -0.1 171,189 - -0.1 171,189 - -1.1 171,189 - +1.0 171,189 - +0.1 171,285 + -0.1 171,285 + -0.8 171,288 + +0.4 171,289 - +0.2 171,343 + -0.8 171,344 - +0.0 171,354 + -1.4 171,354 + +0.7 171,354 + +1.0 171,354 + -1.3 171,354 + +2.1 171,354 + -0.1 171,354 + -0.2 171,354 + +1.9 171,354 + -0.9 171,355 - +0.4 171,355 - +1.8 171,355 - -1.1 171,355 - -0.6 171,355 - -1.3 171,355 - -0.7 171,355 - -0.4 171,355 - +0.4 171,378 - -2.3 171,406 + -0.9 171,407 - +1.3 171,413 + +1.1 171,497 + -3.3 171,563 - EX31_RS05170 0.13 +1.5 171,563 - EX31_RS05170 0.13 -0.3 171,621 + EX31_RS05170 0.20 -0.7 171,622 - EX31_RS05170 0.20 -1.8 171,670 - EX31_RS05170 0.26 +0.7 171,691 + EX31_RS05170 0.28 -0.5 171,691 + EX31_RS05170 0.28 +0.8 171,691 + EX31_RS05170 0.28 +0.2 171,691 + EX31_RS05170 0.28 -1.0 171,691 + EX31_RS05170 0.28 +0.6 171,691 + EX31_RS05170 0.28 +1.9 171,691 + EX31_RS05170 0.28 +0.2 171,691 + EX31_RS05170 0.28 +0.7 171,691 + EX31_RS05170 0.28 +1.0 171,691 + EX31_RS05170 0.28 -1.1 171,691 + EX31_RS05170 0.28 -0.2 171,691 + EX31_RS05170 0.28 +0.4 171,691 + EX31_RS05170 0.28 -0.2 171,691 + EX31_RS05170 0.28 +0.3 171,691 + EX31_RS05170 0.28 +0.3 171,691 + EX31_RS05170 0.28 +0.6 171,692 - EX31_RS05170 0.29 -1.1 171,692 - EX31_RS05170 0.29 +0.3 171,692 - EX31_RS05170 0.29 -1.5 171,692 - EX31_RS05170 0.29 +0.5 171,692 - EX31_RS05170 0.29 +0.9 171,692 - EX31_RS05170 0.29 +0.5 171,692 - EX31_RS05170 0.29 +0.7 171,692 - EX31_RS05170 0.29 +0.7 171,692 - EX31_RS05170 0.29 -0.4 171,692 - EX31_RS05170 0.29 +0.6 171,692 - EX31_RS05170 0.29 -0.6 171,693 + EX31_RS05170 0.29 +0.4 171,693 + EX31_RS05170 0.29 +0.8 171,693 + EX31_RS05170 0.29 +1.0 171,693 + EX31_RS05170 0.29 -1.1 171,693 + EX31_RS05170 0.29 +0.1 171,693 + EX31_RS05170 0.29 +0.6 171,693 + EX31_RS05170 0.29 -0.3 171,693 + EX31_RS05170 0.29 +0.8 171,694 - EX31_RS05170 0.29 -0.9 171,694 - EX31_RS05170 0.29 -0.5 171,694 - EX31_RS05170 0.29 +0.3 171,694 - EX31_RS05170 0.29 +0.9 171,694 - EX31_RS05170 0.29 +0.8 171,694 - EX31_RS05170 0.29 +3.5 171,694 - EX31_RS05170 0.29 +1.2 171,694 - EX31_RS05170 0.29 -0.9 171,694 - EX31_RS05170 0.29 -0.9 171,694 - EX31_RS05170 0.29 +0.6 171,694 - EX31_RS05170 0.29 -0.5 171,694 - EX31_RS05170 0.29 +0.7 171,694 - EX31_RS05170 0.29 +1.9 171,736 + EX31_RS05170 0.34 +0.5 171,736 + EX31_RS05170 0.34 -2.3 171,950 - EX31_RS05170 0.59 +1.1 171,980 + EX31_RS05170 0.63 -0.2 171,980 + EX31_RS05170 0.63 +1.7 171,980 + EX31_RS05170 0.63 +0.3 171,981 - EX31_RS05170 0.63 +0.7 171,981 - EX31_RS05170 0.63 -1.9 171,981 - EX31_RS05170 0.63 -0.5 171,981 - EX31_RS05170 0.63 -0.1 172,000 + EX31_RS05170 0.65 -0.1 172,024 + EX31_RS05170 0.68 -0.1 172,024 + EX31_RS05170 0.68 +0.3 172,024 + EX31_RS05170 0.68 +0.8 172,024 + EX31_RS05170 0.68 -0.8 172,025 - EX31_RS05170 0.68 +0.1 172,025 - EX31_RS05170 0.68 +0.5 172,025 - EX31_RS05170 0.68 -0.5 172,105 - EX31_RS05170 0.78 +1.1 172,105 - EX31_RS05170 0.78 +1.8 172,217 + +0.1 172,217 + -0.4 172,218 - -0.3 172,218 - +0.9 172,291 + +0.8 172,291 + -1.9 172,291 + -0.0 172,291 + +0.2 172,291 + +1.0 172,291 + -1.1 172,291 + -1.6 172,291 + +1.3 172,291 + -0.0 172,291 + +0.7 172,292 - +1.0 172,292 - -0.5 172,292 - +0.4 172,292 - -0.3 172,292 - +0.8 172,296 - +0.5 172,327 - +0.3 172,347 + +0.6 172,413 + +0.7 172,482 + -0.8 172,482 + +0.1 172,483 - -0.8 172,488 + -0.8 172,488 + -1.6 172,488 + +0.1 172,488 + -1.9 172,488 + +0.2 172,488 + +0.5 172,489 - +0.7 172,489 - -2.1 172,489 - +0.8 172,489 - -1.5 172,489 - +0.5 172,489 - +0.0 172,545 + -0.8 172,545 + -0.8 172,545 + -1.8 172,546 - +1.5 172,546 - +1.3 172,546 - +0.5 172,575 - -0.8 172,665 + EX31_RS05175 0.14 -2.6 172,665 + EX31_RS05175 0.14 +0.1 172,666 - EX31_RS05175 0.14 +0.1 172,688 + EX31_RS05175 0.16 -0.5 172,740 + EX31_RS05175 0.20 -2.7 172,740 + EX31_RS05175 0.20 +1.8 172,740 + EX31_RS05175 0.20 -1.3 172,741 - EX31_RS05175 0.20 -1.1 172,757 + EX31_RS05175 0.21 -0.8 172,757 + EX31_RS05175 0.21 -1.6 172,765 - EX31_RS05175 0.22 +0.2 172,787 + EX31_RS05175 0.23 -0.6 172,833 - EX31_RS05175 0.27 -0.9 172,833 - EX31_RS05175 0.27 +1.2 172,833 - EX31_RS05175 0.27 -2.6 172,833 - EX31_RS05175 0.27 -0.9 172,998 + EX31_RS05175 0.39 -0.1 172,998 + EX31_RS05175 0.39 -0.1 172,998 + EX31_RS05175 0.39 +0.5 173,000 + EX31_RS05175 0.39 -0.5 173,147 + EX31_RS05175 0.50 -1.5 173,147 + EX31_RS05175 0.50 -1.2 173,148 - EX31_RS05175 0.50 -1.6
Or see this region's nucleotide sequence