Experiment: D-Mannose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS25120 and ABID97_RS25125 are separated by 9 nucleotides ABID97_RS25125 and ABID97_RS25130 are separated by 14 nucleotides ABID97_RS25130 and ABID97_RS25135 overlap by 4 nucleotides
ABID97_RS25120: ABID97_RS25120 - DUF4126 domain-containing protein, at 5,203,510 to 5,204,181
_RS25120
ABID97_RS25125: ABID97_RS25125 - enoyl-CoA hydratase/isomerase family protein, at 5,204,191 to 5,204,982
_RS25125
ABID97_RS25130: ABID97_RS25130 - carboxyl transferase domain-containing protein, at 5,204,997 to 5,206,622
_RS25130
ABID97_RS25135: ABID97_RS25135 - AMP-binding protein, at 5,206,619 to 5,208,289
_RS25135
Position (kb) 5204
5205
5206
5207 Strain fitness (log2 ratio) -2
-1
0
1 at 5204.109 kb on - strand, within ABID97_RS25120 at 5204.109 kb on - strand, within ABID97_RS25120 at 5204.495 kb on + strand, within ABID97_RS25125 at 5204.496 kb on - strand, within ABID97_RS25125 at 5204.496 kb on - strand, within ABID97_RS25125 at 5204.534 kb on + strand, within ABID97_RS25125 at 5204.535 kb on - strand, within ABID97_RS25125 at 5204.585 kb on + strand, within ABID97_RS25125 at 5204.585 kb on + strand, within ABID97_RS25125 at 5204.586 kb on - strand, within ABID97_RS25125 at 5204.648 kb on + strand, within ABID97_RS25125 at 5204.649 kb on - strand, within ABID97_RS25125 at 5204.649 kb on - strand, within ABID97_RS25125 at 5204.649 kb on - strand, within ABID97_RS25125 at 5204.649 kb on - strand, within ABID97_RS25125 at 5204.753 kb on + strand, within ABID97_RS25125 at 5205.127 kb on + strand at 5205.127 kb on + strand at 5205.130 kb on + strand at 5205.340 kb on + strand, within ABID97_RS25130 at 5205.340 kb on + strand, within ABID97_RS25130 at 5205.340 kb on + strand, within ABID97_RS25130 at 5205.451 kb on + strand, within ABID97_RS25130 at 5205.737 kb on - strand, within ABID97_RS25130 at 5206.027 kb on + strand, within ABID97_RS25130 at 5206.028 kb on - strand, within ABID97_RS25130 at 5206.028 kb on - strand, within ABID97_RS25130 at 5206.105 kb on + strand, within ABID97_RS25130 at 5206.186 kb on + strand, within ABID97_RS25130 at 5206.186 kb on + strand, within ABID97_RS25130 at 5206.187 kb on - strand, within ABID97_RS25130 at 5206.187 kb on - strand, within ABID97_RS25130 at 5206.259 kb on - strand, within ABID97_RS25130 at 5206.259 kb on - strand, within ABID97_RS25130 at 5206.259 kb on - strand, within ABID97_RS25130 at 5206.378 kb on + strand, within ABID97_RS25130 at 5206.378 kb on + strand, within ABID97_RS25130 at 5206.515 kb on + strand at 5206.515 kb on + strand at 5206.535 kb on - strand at 5206.535 kb on - strand at 5206.731 kb on + strand at 5206.732 kb on - strand at 5206.732 kb on - strand at 5206.746 kb on + strand at 5206.747 kb on - strand at 5206.747 kb on - strand at 5206.779 kb on - strand at 5206.779 kb on - strand at 5206.843 kb on - strand, within ABID97_RS25135 at 5206.896 kb on + strand, within ABID97_RS25135 at 5206.923 kb on + strand, within ABID97_RS25135 at 5206.924 kb on - strand, within ABID97_RS25135 at 5206.980 kb on + strand, within ABID97_RS25135 at 5206.980 kb on + strand, within ABID97_RS25135 at 5207.557 kb on - strand, within ABID97_RS25135
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose (C) remove 5,204,109 - ABID97_RS25120 0.89 +0.3 5,204,109 - ABID97_RS25120 0.89 -0.3 5,204,495 + ABID97_RS25125 0.38 +0.1 5,204,496 - ABID97_RS25125 0.39 -1.3 5,204,496 - ABID97_RS25125 0.39 -1.8 5,204,534 + ABID97_RS25125 0.43 -1.0 5,204,535 - ABID97_RS25125 0.43 -1.1 5,204,585 + ABID97_RS25125 0.50 -1.5 5,204,585 + ABID97_RS25125 0.50 +0.3 5,204,586 - ABID97_RS25125 0.50 -0.5 5,204,648 + ABID97_RS25125 0.58 -1.4 5,204,649 - ABID97_RS25125 0.58 -0.7 5,204,649 - ABID97_RS25125 0.58 -0.8 5,204,649 - ABID97_RS25125 0.58 -0.2 5,204,649 - ABID97_RS25125 0.58 -0.6 5,204,753 + ABID97_RS25125 0.71 -0.3 5,205,127 + -0.2 5,205,127 + -1.8 5,205,130 + +0.1 5,205,340 + ABID97_RS25130 0.21 +0.6 5,205,340 + ABID97_RS25130 0.21 -0.5 5,205,340 + ABID97_RS25130 0.21 -1.1 5,205,451 + ABID97_RS25130 0.28 -0.2 5,205,737 - ABID97_RS25130 0.46 -0.6 5,206,027 + ABID97_RS25130 0.63 -0.5 5,206,028 - ABID97_RS25130 0.63 -0.1 5,206,028 - ABID97_RS25130 0.63 +1.1 5,206,105 + ABID97_RS25130 0.68 +0.6 5,206,186 + ABID97_RS25130 0.73 -1.8 5,206,186 + ABID97_RS25130 0.73 -1.6 5,206,187 - ABID97_RS25130 0.73 -0.1 5,206,187 - ABID97_RS25130 0.73 +0.9 5,206,259 - ABID97_RS25130 0.78 -0.9 5,206,259 - ABID97_RS25130 0.78 -0.5 5,206,259 - ABID97_RS25130 0.78 -1.1 5,206,378 + ABID97_RS25130 0.85 +0.5 5,206,378 + ABID97_RS25130 0.85 -0.2 5,206,515 + +0.8 5,206,515 + -0.4 5,206,535 - -0.9 5,206,535 - -1.3 5,206,731 + +0.0 5,206,732 - -1.1 5,206,732 - +0.1 5,206,746 + +0.2 5,206,747 - -0.1 5,206,747 - -0.5 5,206,779 - -0.6 5,206,779 - -0.4 5,206,843 - ABID97_RS25135 0.13 -0.3 5,206,896 + ABID97_RS25135 0.17 -0.1 5,206,923 + ABID97_RS25135 0.18 +1.0 5,206,924 - ABID97_RS25135 0.18 -0.1 5,206,980 + ABID97_RS25135 0.22 -0.0 5,206,980 + ABID97_RS25135 0.22 +0.0 5,207,557 - ABID97_RS25135 0.56 +0.3
Or see this region's nucleotide sequence