Experiment: Glucuronamide (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS26540 and ABID97_RS26545 are separated by 9 nucleotides ABID97_RS26545 and ABID97_RS26550 are separated by 17 nucleotides ABID97_RS26550 and ABID97_RS26555 are separated by 43 nucleotides ABID97_RS26555 and ABID97_RS26560 are separated by 19 nucleotides
ABID97_RS26540: ABID97_RS26540 - dihydrolipoyl dehydrogenase, at 227,708 to 229,504
_RS26540
ABID97_RS26545: ABID97_RS26545 - alpha/beta fold hydrolase, at 229,514 to 230,308
_RS26545
ABID97_RS26550: ABID97_RS26550 - NADP-dependent malic enzyme, at 230,326 to 232,611
_RS26550
ABID97_RS26555: ABID97_RS26555 - lipoyl synthase, at 232,655 to 233,572
_RS26555
ABID97_RS26560: ABID97_RS26560 - dicarboxylate/amino acid:cation symporter, at 233,592 to 234,938
_RS26560
Position (kb) 230
231
232
233 Strain fitness (log2 ratio) -1
0
1 at 229.694 kb on + strand, within ABID97_RS26545 at 229.859 kb on + strand, within ABID97_RS26545 at 231.424 kb on + strand, within ABID97_RS26550 at 231.868 kb on + strand, within ABID97_RS26550 at 232.997 kb on + strand, within ABID97_RS26555 at 232.997 kb on + strand, within ABID97_RS26555 at 232.997 kb on + strand, within ABID97_RS26555 at 232.997 kb on + strand, within ABID97_RS26555 at 233.241 kb on - strand, within ABID97_RS26555 at 233.441 kb on + strand, within ABID97_RS26555
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (C) remove 229,694 + ABID97_RS26545 0.23 +0.4 229,859 + ABID97_RS26545 0.43 -0.2 231,424 + ABID97_RS26550 0.48 -0.8 231,868 + ABID97_RS26550 0.67 -1.0 232,997 + ABID97_RS26555 0.37 +1.1 232,997 + ABID97_RS26555 0.37 +0.2 232,997 + ABID97_RS26555 0.37 -0.1 232,997 + ABID97_RS26555 0.37 +0.1 233,241 - ABID97_RS26555 0.64 +0.5 233,441 + ABID97_RS26555 0.86 -0.5
Or see this region's nucleotide sequence