Strain Fitness in Variovorax sp. OAS795 around ABID97_RS26490

Experiment: Glucuronamide (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS26485 and ABID97_RS26490 are separated by 15 nucleotidesABID97_RS26490 and ABID97_RS26495 overlap by 4 nucleotidesABID97_RS26495 and ABID97_RS26500 are separated by 100 nucleotides ABID97_RS26485: ABID97_RS26485 - cytochrome c oxidase assembly protein, at 215,642 to 216,592 _RS26485 ABID97_RS26490: ABID97_RS26490 - aspartate/glutamate racemase family protein, at 216,608 to 217,300 _RS26490 ABID97_RS26495: ABID97_RS26495 - Lrp/AsnC family transcriptional regulator, at 217,297 to 217,773 _RS26495 ABID97_RS26500: ABID97_RS26500 - saccharopine dehydrogenase C-terminal domain-containing protein, at 217,874 to 219,007 _RS26500 Position (kb) 216 217 218Strain fitness (log2 ratio) -1 0 1at 215.644 kb on - strandat 215.830 kb on - strand, within ABID97_RS26485at 215.898 kb on + strand, within ABID97_RS26485at 215.899 kb on - strand, within ABID97_RS26485at 217.210 kb on - strand, within ABID97_RS26490at 217.460 kb on + strand, within ABID97_RS26495at 217.815 kb on - strandat 217.935 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (C)
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215,644 - +0.1
215,830 - ABID97_RS26485 0.20 -0.5
215,898 + ABID97_RS26485 0.27 -0.1
215,899 - ABID97_RS26485 0.27 -0.7
217,210 - ABID97_RS26490 0.87 -1.1
217,460 + ABID97_RS26495 0.34 +0.2
217,815 - +0.1
217,935 + -0.5

Or see this region's nucleotide sequence