Strain Fitness in Variovorax sp. OAS795 around ABID97_RS18580

Experiment: Glucuronamide (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS18570 and ABID97_RS18575 are separated by 87 nucleotidesABID97_RS18575 and ABID97_RS18580 are separated by 34 nucleotidesABID97_RS18580 and ABID97_RS18585 are separated by 11 nucleotides ABID97_RS18570: ABID97_RS18570 - nitroreductase, at 3,827,352 to 3,828,053 _RS18570 ABID97_RS18575: ABID97_RS18575 - CoA transferase, at 3,828,141 to 3,828,584 _RS18575 ABID97_RS18580: ABID97_RS18580 - CoA transferase, at 3,828,619 to 3,829,356 _RS18580 ABID97_RS18585: ABID97_RS18585 - acyl-CoA dehydrogenase family protein, at 3,829,368 to 3,831,023 _RS18585 Position (kb) 3828 3829 3830Strain fitness (log2 ratio) -1 0 1at 3828.947 kb on + strand, within ABID97_RS18580

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (C)
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3,828,947 + ABID97_RS18580 0.44 -0.9

Or see this region's nucleotide sequence