Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4506

Experiment: Aluminum chloride 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_4504 and PfGW456L13_4505 are separated by 28 nucleotidesPfGW456L13_4505 and PfGW456L13_4506 are separated by 4 nucleotidesPfGW456L13_4506 and PfGW456L13_4507 are separated by 17 nucleotides PfGW456L13_4504 - Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6), at 5,037,595 to 5,038,308 _4504 PfGW456L13_4505 - Metal-dependent hydrolases of the beta-lactamase superfamily I, at 5,038,337 to 5,039,095 _4505 PfGW456L13_4506 - Outer membrane protein NlpB, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and YfgL); Lipoprotein-34 precursor, at 5,039,100 to 5,040,215 _4506 PfGW456L13_4507 - 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7), at 5,040,233 to 5,041,111 _4507 Position (kb) 5039 5040 5041Strain fitness (log2 ratio) -3 -2 -1 0 1at 5038.326 kb on - strandat 5038.326 kb on - strandat 5038.326 kb on - strandat 5038.326 kb on - strandat 5038.326 kb on - strandat 5038.330 kb on - strandat 5038.330 kb on - strandat 5038.330 kb on - strandat 5038.330 kb on - strandat 5038.346 kb on - strandat 5038.576 kb on - strand, within PfGW456L13_4505at 5038.672 kb on - strand, within PfGW456L13_4505at 5038.726 kb on - strand, within PfGW456L13_4505at 5038.726 kb on - strand, within PfGW456L13_4505at 5038.829 kb on - strand, within PfGW456L13_4505at 5038.829 kb on - strand, within PfGW456L13_4505at 5038.882 kb on - strand, within PfGW456L13_4505at 5038.882 kb on - strand, within PfGW456L13_4505at 5039.025 kb on - strandat 5039.025 kb on - strandat 5039.025 kb on - strandat 5039.029 kb on - strandat 5039.029 kb on - strandat 5039.029 kb on - strandat 5039.029 kb on - strandat 5039.029 kb on - strandat 5039.029 kb on - strandat 5039.029 kb on - strandat 5039.029 kb on - strandat 5039.029 kb on - strandat 5039.029 kb on - strandat 5039.029 kb on - strandat 5039.029 kb on - strandat 5039.033 kb on - strandat 5039.033 kb on - strandat 5039.033 kb on - strandat 5039.033 kb on - strandat 5039.069 kb on - strandat 5039.096 kb on - strandat 5039.096 kb on - strandat 5039.096 kb on - strandat 5039.336 kb on - strand, within PfGW456L13_4506at 5039.336 kb on - strand, within PfGW456L13_4506at 5039.336 kb on - strand, within PfGW456L13_4506at 5039.336 kb on - strand, within PfGW456L13_4506at 5039.336 kb on - strand, within PfGW456L13_4506at 5039.339 kb on - strand, within PfGW456L13_4506at 5039.339 kb on - strand, within PfGW456L13_4506at 5039.339 kb on - strand, within PfGW456L13_4506at 5039.339 kb on - strand, within PfGW456L13_4506at 5039.541 kb on - strand, within PfGW456L13_4506at 5039.541 kb on - strand, within PfGW456L13_4506at 5039.660 kb on - strand, within PfGW456L13_4506at 5039.660 kb on - strand, within PfGW456L13_4506at 5039.660 kb on - strand, within PfGW456L13_4506at 5039.673 kb on - strand, within PfGW456L13_4506at 5039.673 kb on - strand, within PfGW456L13_4506at 5040.131 kb on - strandat 5040.177 kb on - strandat 5040.177 kb on - strandat 5040.223 kb on - strandat 5040.223 kb on - strandat 5040.223 kb on - strandat 5040.715 kb on - strand, within PfGW456L13_4507at 5040.793 kb on - strand, within PfGW456L13_4507at 5040.793 kb on - strand, within PfGW456L13_4507at 5040.793 kb on - strand, within PfGW456L13_4507at 5040.793 kb on - strand, within PfGW456L13_4507at 5041.149 kb on - strandat 5041.179 kb on + strandat 5041.179 kb on + strandat 5041.179 kb on + strandat 5041.179 kb on + strandat 5041.179 kb on + strandat 5041.180 kb on - strandat 5041.180 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum chloride 5 mM
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5,038,326 - +0.8
5,038,326 - -1.0
5,038,326 - +0.6
5,038,326 - -1.1
5,038,326 - -2.2
5,038,330 - +0.1
5,038,330 - +0.4
5,038,330 - +0.2
5,038,330 - +0.2
5,038,346 - -2.0
5,038,576 - PfGW456L13_4505 0.31 -0.5
5,038,672 - PfGW456L13_4505 0.44 +0.4
5,038,726 - PfGW456L13_4505 0.51 -0.2
5,038,726 - PfGW456L13_4505 0.51 -0.5
5,038,829 - PfGW456L13_4505 0.65 -0.4
5,038,829 - PfGW456L13_4505 0.65 +0.8
5,038,882 - PfGW456L13_4505 0.72 -0.5
5,038,882 - PfGW456L13_4505 0.72 +1.0
5,039,025 - -0.7
5,039,025 - -0.2
5,039,025 - -1.5
5,039,029 - +0.7
5,039,029 - -0.3
5,039,029 - -1.4
5,039,029 - +0.6
5,039,029 - +0.1
5,039,029 - +0.0
5,039,029 - +1.2
5,039,029 - +0.3
5,039,029 - -0.9
5,039,029 - +1.1
5,039,029 - +0.4
5,039,029 - +0.6
5,039,033 - +0.3
5,039,033 - +0.6
5,039,033 - +0.0
5,039,033 - -1.1
5,039,069 - -0.5
5,039,096 - +0.6
5,039,096 - -0.3
5,039,096 - -0.2
5,039,336 - PfGW456L13_4506 0.21 -0.8
5,039,336 - PfGW456L13_4506 0.21 -1.4
5,039,336 - PfGW456L13_4506 0.21 -1.3
5,039,336 - PfGW456L13_4506 0.21 +0.5
5,039,336 - PfGW456L13_4506 0.21 +0.3
5,039,339 - PfGW456L13_4506 0.21 +0.1
5,039,339 - PfGW456L13_4506 0.21 -2.4
5,039,339 - PfGW456L13_4506 0.21 -2.8
5,039,339 - PfGW456L13_4506 0.21 -2.0
5,039,541 - PfGW456L13_4506 0.40 -1.5
5,039,541 - PfGW456L13_4506 0.40 -2.6
5,039,660 - PfGW456L13_4506 0.50 -0.4
5,039,660 - PfGW456L13_4506 0.50 -1.8
5,039,660 - PfGW456L13_4506 0.50 -1.0
5,039,673 - PfGW456L13_4506 0.51 -1.1
5,039,673 - PfGW456L13_4506 0.51 -1.3
5,040,131 - -2.8
5,040,177 - -1.9
5,040,177 - +1.2
5,040,223 - -0.4
5,040,223 - -2.0
5,040,223 - -0.3
5,040,715 - PfGW456L13_4507 0.55 +0.2
5,040,793 - PfGW456L13_4507 0.64 -2.6
5,040,793 - PfGW456L13_4507 0.64 +0.3
5,040,793 - PfGW456L13_4507 0.64 -2.1
5,040,793 - PfGW456L13_4507 0.64 -0.8
5,041,149 - -0.4
5,041,179 + +0.4
5,041,179 + -1.1
5,041,179 + +0.6
5,041,179 + -1.0
5,041,179 + -1.0
5,041,180 - -0.5
5,041,180 - +0.6

Or see this region's nucleotide sequence