Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4160

Experiment: Aluminum chloride 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_4159 and PfGW456L13_4160 are separated by 396 nucleotidesPfGW456L13_4160 and PfGW456L13_4161 are separated by 60 nucleotidesPfGW456L13_4161 and PfGW456L13_4162 are separated by 4 nucleotides PfGW456L13_4159 - Acetoacetyl-CoA synthetase (EC 6.2.1.16) / Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 4,674,249 to 4,676,048 _4159 PfGW456L13_4160 - FIG00958237: hypothetical protein, at 4,676,445 to 4,676,723 _4160 PfGW456L13_4161 - 2,3-diketo-5-methylthiopentyl-1-phosphate enolase-phosphatase (EC 3.1.3.77), at 4,676,784 to 4,677,467 _4161 PfGW456L13_4162 - 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase (EC 1.13.11.54), at 4,677,472 to 4,678,017 _4162 Position (kb) 4676 4677Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4675.687 kb on - strand, within PfGW456L13_4159at 4675.687 kb on - strand, within PfGW456L13_4159at 4675.687 kb on - strand, within PfGW456L13_4159at 4675.712 kb on + strand, within PfGW456L13_4159at 4675.712 kb on + strand, within PfGW456L13_4159at 4675.713 kb on - strand, within PfGW456L13_4159at 4675.874 kb on - strandat 4675.874 kb on - strandat 4675.884 kb on + strandat 4675.884 kb on + strandat 4675.884 kb on + strandat 4675.884 kb on + strandat 4675.884 kb on + strandat 4675.884 kb on + strandat 4676.060 kb on + strandat 4676.109 kb on + strandat 4676.109 kb on + strandat 4676.141 kb on + strandat 4676.141 kb on + strandat 4676.142 kb on - strandat 4676.142 kb on - strandat 4676.142 kb on - strandat 4676.142 kb on - strandat 4676.142 kb on - strandat 4676.163 kb on + strandat 4676.188 kb on + strandat 4676.189 kb on - strandat 4676.189 kb on - strandat 4676.408 kb on + strandat 4676.408 kb on + strandat 4676.408 kb on + strandat 4676.409 kb on - strandat 4676.577 kb on + strand, within PfGW456L13_4160at 4676.578 kb on - strand, within PfGW456L13_4160at 4676.709 kb on + strandat 4676.709 kb on + strandat 4676.709 kb on + strandat 4676.709 kb on + strandat 4676.709 kb on + strandat 4676.709 kb on + strandat 4676.710 kb on - strandat 4677.657 kb on - strand, within PfGW456L13_4162at 4677.706 kb on + strand, within PfGW456L13_4162at 4677.707 kb on - strand, within PfGW456L13_4162at 4677.707 kb on - strand, within PfGW456L13_4162

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum chloride 5 mM
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4,675,687 - PfGW456L13_4159 0.80 +0.2
4,675,687 - PfGW456L13_4159 0.80 -1.1
4,675,687 - PfGW456L13_4159 0.80 +0.3
4,675,712 + PfGW456L13_4159 0.81 -1.7
4,675,712 + PfGW456L13_4159 0.81 -0.3
4,675,713 - PfGW456L13_4159 0.81 -0.2
4,675,874 - -0.4
4,675,874 - +1.9
4,675,884 + -0.1
4,675,884 + -1.0
4,675,884 + +0.3
4,675,884 + +1.0
4,675,884 + +1.0
4,675,884 + -2.3
4,676,060 + -1.0
4,676,109 + +0.3
4,676,109 + +0.6
4,676,141 + +0.1
4,676,141 + -0.6
4,676,142 - +0.6
4,676,142 - +0.3
4,676,142 - -0.4
4,676,142 - +0.7
4,676,142 - -0.0
4,676,163 + +0.7
4,676,188 + +0.3
4,676,189 - +0.6
4,676,189 - -1.0
4,676,408 + -0.1
4,676,408 + -0.3
4,676,408 + +0.8
4,676,409 - +0.4
4,676,577 + PfGW456L13_4160 0.47 -1.6
4,676,578 - PfGW456L13_4160 0.48 -0.3
4,676,709 + +1.2
4,676,709 + +0.8
4,676,709 + +1.0
4,676,709 + -3.7
4,676,709 + +0.2
4,676,709 + +1.3
4,676,710 - +0.2
4,677,657 - PfGW456L13_4162 0.34 -0.4
4,677,706 + PfGW456L13_4162 0.43 -1.2
4,677,707 - PfGW456L13_4162 0.43 +1.6
4,677,707 - PfGW456L13_4162 0.43 -1.6

Or see this region's nucleotide sequence