Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_27510

Experiment: L-Lysine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_27500 and AO356_27505 are separated by 193 nucleotidesAO356_27505 and AO356_27510 are separated by 58 nucleotidesAO356_27510 and AO356_27515 are separated by 215 nucleotides AO356_27500: AO356_27500 - amino acid permease, at 6,267,358 to 6,268,806 _27500 AO356_27505: AO356_27505 - transcriptional regulator, at 6,269,000 to 6,269,740 _27505 AO356_27510: AO356_27510 - AraC family transcriptional regulator, at 6,269,799 to 6,270,767 _27510 AO356_27515: AO356_27515 - 4-aminobutyrate aminotransferase, at 6,270,983 to 6,272,356 _27515 Position (kb) 6269 6270 6271Strain fitness (log2 ratio) -1 0 1at 6268.799 kb on - strandat 6268.821 kb on - strandat 6268.825 kb on + strandat 6268.825 kb on + strandat 6268.825 kb on + strandat 6268.826 kb on - strandat 6268.826 kb on - strandat 6268.842 kb on - strandat 6268.914 kb on + strandat 6269.001 kb on + strandat 6269.061 kb on + strandat 6269.061 kb on + strandat 6269.290 kb on - strand, within AO356_27505at 6269.290 kb on - strand, within AO356_27505at 6269.320 kb on - strand, within AO356_27505at 6269.523 kb on + strand, within AO356_27505at 6269.523 kb on + strand, within AO356_27505at 6269.524 kb on - strand, within AO356_27505at 6269.897 kb on - strand, within AO356_27510at 6269.996 kb on - strand, within AO356_27510at 6269.996 kb on - strand, within AO356_27510at 6270.139 kb on + strand, within AO356_27510at 6270.140 kb on - strand, within AO356_27510at 6270.140 kb on - strand, within AO356_27510at 6270.161 kb on + strand, within AO356_27510at 6270.425 kb on + strand, within AO356_27510at 6270.663 kb on - strand, within AO356_27510at 6270.691 kb on + strandat 6270.691 kb on + strandat 6270.919 kb on + strandat 6271.034 kb on - strandat 6271.178 kb on + strand, within AO356_27515at 6271.178 kb on + strand, within AO356_27515at 6271.178 kb on + strand, within AO356_27515at 6271.178 kb on + strand, within AO356_27515at 6271.179 kb on - strand, within AO356_27515at 6271.363 kb on + strand, within AO356_27515at 6271.363 kb on + strand, within AO356_27515at 6271.363 kb on + strand, within AO356_27515at 6271.364 kb on - strand, within AO356_27515at 6271.364 kb on - strand, within AO356_27515at 6271.565 kb on + strand, within AO356_27515at 6271.565 kb on + strand, within AO356_27515

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lysine (C)
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6,268,799 - -0.1
6,268,821 - -1.5
6,268,825 + -0.7
6,268,825 + +0.2
6,268,825 + +0.2
6,268,826 - -0.4
6,268,826 - -0.4
6,268,842 - +0.5
6,268,914 + +0.1
6,269,001 + -0.8
6,269,061 + +0.1
6,269,061 + +0.4
6,269,290 - AO356_27505 0.39 +1.0
6,269,290 - AO356_27505 0.39 +0.8
6,269,320 - AO356_27505 0.43 -0.0
6,269,523 + AO356_27505 0.71 -0.3
6,269,523 + AO356_27505 0.71 -0.1
6,269,524 - AO356_27505 0.71 +0.6
6,269,897 - AO356_27510 0.10 +0.1
6,269,996 - AO356_27510 0.20 -0.0
6,269,996 - AO356_27510 0.20 -0.0
6,270,139 + AO356_27510 0.35 -0.4
6,270,140 - AO356_27510 0.35 +0.1
6,270,140 - AO356_27510 0.35 -1.2
6,270,161 + AO356_27510 0.37 +1.6
6,270,425 + AO356_27510 0.65 -0.1
6,270,663 - AO356_27510 0.89 +0.8
6,270,691 + -0.6
6,270,691 + +0.6
6,270,919 + -0.2
6,271,034 - -0.5
6,271,178 + AO356_27515 0.14 +1.0
6,271,178 + AO356_27515 0.14 +0.4
6,271,178 + AO356_27515 0.14 -0.1
6,271,178 + AO356_27515 0.14 -0.1
6,271,179 - AO356_27515 0.14 +0.3
6,271,363 + AO356_27515 0.28 -0.1
6,271,363 + AO356_27515 0.28 +0.7
6,271,363 + AO356_27515 0.28 +0.3
6,271,364 - AO356_27515 0.28 -0.6
6,271,364 - AO356_27515 0.28 -1.6
6,271,565 + AO356_27515 0.42 +0.3
6,271,565 + AO356_27515 0.42 +0.6

Or see this region's nucleotide sequence