Strain Fitness in Rahnella sp. WP5 around EX31_RS17425

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS17420 and EX31_RS17425 overlap by 8 nucleotidesEX31_RS17425 and EX31_RS17430 are separated by 1 nucleotidesEX31_RS17430 and EX31_RS17435 are separated by 29 nucleotides EX31_RS17420: EX31_RS17420 - sugar ABC transporter ATP-binding protein, at 34,631 to 36,169 _RS17420 EX31_RS17425: EX31_RS17425 - ABC transporter permease, at 36,162 to 37,151 _RS17425 EX31_RS17430: EX31_RS17430 - ABC transporter permease, at 37,153 to 38,106 _RS17430 EX31_RS17435: EX31_RS17435 - FGGY-family carbohydrate kinase, at 38,136 to 39,776 _RS17435 Position (kb) 36 37 38Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 35.211 kb on + strand, within EX31_RS17420at 35.320 kb on - strand, within EX31_RS17420at 35.348 kb on + strand, within EX31_RS17420at 35.407 kb on + strand, within EX31_RS17420at 35.408 kb on - strand, within EX31_RS17420at 35.411 kb on + strand, within EX31_RS17420at 35.411 kb on + strand, within EX31_RS17420at 35.412 kb on - strand, within EX31_RS17420at 35.412 kb on - strand, within EX31_RS17420at 35.489 kb on + strand, within EX31_RS17420at 35.490 kb on - strand, within EX31_RS17420at 35.490 kb on - strand, within EX31_RS17420at 35.678 kb on + strand, within EX31_RS17420at 35.678 kb on + strand, within EX31_RS17420at 35.678 kb on + strand, within EX31_RS17420at 35.678 kb on + strand, within EX31_RS17420at 35.678 kb on + strand, within EX31_RS17420at 35.678 kb on + strand, within EX31_RS17420at 35.678 kb on + strand, within EX31_RS17420at 35.678 kb on + strand, within EX31_RS17420at 35.678 kb on + strand, within EX31_RS17420at 35.678 kb on + strand, within EX31_RS17420at 35.678 kb on + strand, within EX31_RS17420at 35.678 kb on + strand, within EX31_RS17420at 35.678 kb on + strand, within EX31_RS17420at 35.678 kb on + strand, within EX31_RS17420at 35.679 kb on - strand, within EX31_RS17420at 35.679 kb on - strand, within EX31_RS17420at 35.679 kb on - strand, within EX31_RS17420at 35.679 kb on - strand, within EX31_RS17420at 35.679 kb on - strand, within EX31_RS17420at 35.679 kb on - strand, within EX31_RS17420at 35.679 kb on - strand, within EX31_RS17420at 35.679 kb on - strand, within EX31_RS17420at 35.679 kb on - strand, within EX31_RS17420at 35.839 kb on + strand, within EX31_RS17420at 35.839 kb on + strand, within EX31_RS17420at 35.840 kb on - strand, within EX31_RS17420at 35.932 kb on + strand, within EX31_RS17420at 35.933 kb on - strand, within EX31_RS17420at 36.062 kb on + strandat 36.062 kb on + strandat 36.062 kb on + strandat 36.063 kb on - strandat 36.063 kb on - strandat 36.063 kb on - strandat 36.063 kb on - strandat 36.065 kb on + strandat 36.065 kb on + strandat 36.065 kb on + strandat 36.065 kb on + strandat 36.066 kb on - strandat 36.066 kb on - strandat 36.066 kb on - strandat 36.167 kb on + strandat 36.170 kb on + strandat 36.170 kb on + strandat 36.170 kb on + strandat 36.170 kb on + strandat 36.170 kb on + strandat 36.170 kb on + strandat 36.171 kb on - strandat 36.171 kb on - strandat 36.171 kb on - strandat 36.171 kb on - strandat 36.171 kb on - strandat 36.171 kb on - strandat 36.400 kb on - strand, within EX31_RS17425at 36.400 kb on - strand, within EX31_RS17425at 36.414 kb on + strand, within EX31_RS17425at 36.414 kb on + strand, within EX31_RS17425at 36.414 kb on + strand, within EX31_RS17425at 36.414 kb on + strand, within EX31_RS17425at 36.414 kb on + strand, within EX31_RS17425at 36.415 kb on - strand, within EX31_RS17425at 36.415 kb on - strand, within EX31_RS17425at 36.415 kb on - strand, within EX31_RS17425at 36.415 kb on - strand, within EX31_RS17425at 36.479 kb on - strand, within EX31_RS17425at 36.507 kb on + strand, within EX31_RS17425at 36.508 kb on - strand, within EX31_RS17425at 36.530 kb on + strand, within EX31_RS17425at 36.530 kb on + strand, within EX31_RS17425at 36.530 kb on + strand, within EX31_RS17425at 36.531 kb on - strand, within EX31_RS17425at 36.531 kb on - strand, within EX31_RS17425at 36.533 kb on + strand, within EX31_RS17425at 36.533 kb on + strand, within EX31_RS17425at 36.533 kb on + strand, within EX31_RS17425at 36.534 kb on - strand, within EX31_RS17425at 36.562 kb on - strand, within EX31_RS17425at 36.576 kb on + strand, within EX31_RS17425at 36.576 kb on + strand, within EX31_RS17425at 36.576 kb on + strand, within EX31_RS17425at 36.576 kb on + strand, within EX31_RS17425at 36.576 kb on + strand, within EX31_RS17425at 36.577 kb on - strand, within EX31_RS17425at 36.621 kb on - strand, within EX31_RS17425at 36.632 kb on + strand, within EX31_RS17425at 36.633 kb on - strand, within EX31_RS17425at 36.633 kb on - strand, within EX31_RS17425at 36.663 kb on + strand, within EX31_RS17425at 36.669 kb on + strand, within EX31_RS17425at 36.759 kb on + strand, within EX31_RS17425at 36.839 kb on + strand, within EX31_RS17425at 36.840 kb on - strand, within EX31_RS17425at 36.884 kb on + strand, within EX31_RS17425at 36.902 kb on + strand, within EX31_RS17425at 36.902 kb on + strand, within EX31_RS17425at 36.902 kb on + strand, within EX31_RS17425at 36.902 kb on + strand, within EX31_RS17425at 36.902 kb on + strand, within EX31_RS17425at 36.903 kb on - strand, within EX31_RS17425at 37.049 kb on + strand, within EX31_RS17425at 37.163 kb on + strandat 37.164 kb on - strandat 37.273 kb on - strand, within EX31_RS17430at 37.490 kb on + strand, within EX31_RS17430at 37.490 kb on + strand, within EX31_RS17430at 37.495 kb on - strand, within EX31_RS17430at 37.513 kb on + strand, within EX31_RS17430at 37.513 kb on + strand, within EX31_RS17430at 37.513 kb on + strand, within EX31_RS17430at 37.513 kb on + strand, within EX31_RS17430at 37.514 kb on - strand, within EX31_RS17430at 37.514 kb on - strand, within EX31_RS17430at 37.514 kb on - strand, within EX31_RS17430at 37.514 kb on - strand, within EX31_RS17430at 37.514 kb on - strand, within EX31_RS17430at 37.514 kb on - strand, within EX31_RS17430at 37.514 kb on - strand, within EX31_RS17430at 37.514 kb on - strand, within EX31_RS17430at 37.514 kb on - strand, within EX31_RS17430at 37.514 kb on - strand, within EX31_RS17430at 37.515 kb on + strand, within EX31_RS17430at 37.560 kb on + strand, within EX31_RS17430at 37.560 kb on + strand, within EX31_RS17430at 37.575 kb on + strand, within EX31_RS17430at 37.575 kb on + strand, within EX31_RS17430at 37.739 kb on - strand, within EX31_RS17430at 37.785 kb on + strand, within EX31_RS17430at 37.810 kb on + strand, within EX31_RS17430at 37.810 kb on + strand, within EX31_RS17430at 37.810 kb on + strand, within EX31_RS17430at 37.811 kb on - strand, within EX31_RS17430at 37.885 kb on + strand, within EX31_RS17430at 37.898 kb on - strand, within EX31_RS17430at 37.898 kb on - strand, within EX31_RS17430at 37.907 kb on + strand, within EX31_RS17430at 37.938 kb on + strand, within EX31_RS17430at 37.976 kb on + strand, within EX31_RS17430at 37.976 kb on + strand, within EX31_RS17430at 37.977 kb on - strand, within EX31_RS17430at 37.979 kb on + strand, within EX31_RS17430at 37.979 kb on + strand, within EX31_RS17430at 37.979 kb on + strand, within EX31_RS17430at 37.979 kb on + strand, within EX31_RS17430at 38.038 kb on + strandat 38.038 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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35,211 + EX31_RS17420 0.38 -1.5
35,320 - EX31_RS17420 0.45 +0.5
35,348 + EX31_RS17420 0.47 +0.7
35,407 + EX31_RS17420 0.50 +0.8
35,408 - EX31_RS17420 0.50 -0.6
35,411 + EX31_RS17420 0.51 -0.4
35,411 + EX31_RS17420 0.51 +0.3
35,412 - EX31_RS17420 0.51 +0.8
35,412 - EX31_RS17420 0.51 +1.4
35,489 + EX31_RS17420 0.56 +0.2
35,490 - EX31_RS17420 0.56 +0.7
35,490 - EX31_RS17420 0.56 +3.4
35,678 + EX31_RS17420 0.68 +0.5
35,678 + EX31_RS17420 0.68 -0.8
35,678 + EX31_RS17420 0.68 -0.1
35,678 + EX31_RS17420 0.68 -1.2
35,678 + EX31_RS17420 0.68 -1.2
35,678 + EX31_RS17420 0.68 -1.5
35,678 + EX31_RS17420 0.68 +2.2
35,678 + EX31_RS17420 0.68 +0.5
35,678 + EX31_RS17420 0.68 +0.5
35,678 + EX31_RS17420 0.68 +3.0
35,678 + EX31_RS17420 0.68 +0.2
35,678 + EX31_RS17420 0.68 +2.4
35,678 + EX31_RS17420 0.68 +0.8
35,678 + EX31_RS17420 0.68 -1.3
35,679 - EX31_RS17420 0.68 +0.9
35,679 - EX31_RS17420 0.68 +0.8
35,679 - EX31_RS17420 0.68 +1.1
35,679 - EX31_RS17420 0.68 -0.2
35,679 - EX31_RS17420 0.68 -0.2
35,679 - EX31_RS17420 0.68 -0.2
35,679 - EX31_RS17420 0.68 +0.5
35,679 - EX31_RS17420 0.68 -2.3
35,679 - EX31_RS17420 0.68 -0.8
35,839 + EX31_RS17420 0.78 +1.2
35,839 + EX31_RS17420 0.78 +0.8
35,840 - EX31_RS17420 0.79 +0.1
35,932 + EX31_RS17420 0.85 -1.8
35,933 - EX31_RS17420 0.85 +1.8
36,062 + +2.2
36,062 + +1.2
36,062 + +1.5
36,063 - -2.0
36,063 - -0.2
36,063 - +1.8
36,063 - +0.8
36,065 + -0.2
36,065 + +0.0
36,065 + -2.3
36,065 + -0.8
36,066 - +1.2
36,066 - +0.6
36,066 - +0.8
36,167 + +4.3
36,170 + -0.2
36,170 + -0.2
36,170 + +1.8
36,170 + -2.3
36,170 + +2.1
36,170 + +0.8
36,171 - +2.0
36,171 - -0.6
36,171 - -1.0
36,171 - +1.8
36,171 - +2.8
36,171 - +1.4
36,400 - EX31_RS17425 0.24 -0.3
36,400 - EX31_RS17425 0.24 -0.8
36,414 + EX31_RS17425 0.25 +0.1
36,414 + EX31_RS17425 0.25 -1.2
36,414 + EX31_RS17425 0.25 -0.5
36,414 + EX31_RS17425 0.25 +1.4
36,414 + EX31_RS17425 0.25 +0.2
36,415 - EX31_RS17425 0.26 -1.0
36,415 - EX31_RS17425 0.26 +1.7
36,415 - EX31_RS17425 0.26 -1.2
36,415 - EX31_RS17425 0.26 +0.5
36,479 - EX31_RS17425 0.32 -0.3
36,507 + EX31_RS17425 0.35 -2.3
36,508 - EX31_RS17425 0.35 +0.5
36,530 + EX31_RS17425 0.37 +0.1
36,530 + EX31_RS17425 0.37 +0.8
36,530 + EX31_RS17425 0.37 -0.2
36,531 - EX31_RS17425 0.37 +1.4
36,531 - EX31_RS17425 0.37 +0.8
36,533 + EX31_RS17425 0.37 +0.2
36,533 + EX31_RS17425 0.37 -0.4
36,533 + EX31_RS17425 0.37 -0.2
36,534 - EX31_RS17425 0.38 -0.8
36,562 - EX31_RS17425 0.40 +1.7
36,576 + EX31_RS17425 0.42 -1.2
36,576 + EX31_RS17425 0.42 -0.6
36,576 + EX31_RS17425 0.42 +0.3
36,576 + EX31_RS17425 0.42 +0.8
36,576 + EX31_RS17425 0.42 -1.5
36,577 - EX31_RS17425 0.42 +1.4
36,621 - EX31_RS17425 0.46 +1.2
36,632 + EX31_RS17425 0.47 +1.1
36,633 - EX31_RS17425 0.48 +0.8
36,633 - EX31_RS17425 0.48 +2.2
36,663 + EX31_RS17425 0.51 +0.2
36,669 + EX31_RS17425 0.51 -0.3
36,759 + EX31_RS17425 0.60 +0.8
36,839 + EX31_RS17425 0.68 +0.2
36,840 - EX31_RS17425 0.68 +0.3
36,884 + EX31_RS17425 0.73 -1.8
36,902 + EX31_RS17425 0.75 +2.8
36,902 + EX31_RS17425 0.75 -0.2
36,902 + EX31_RS17425 0.75 -0.2
36,902 + EX31_RS17425 0.75 -0.2
36,902 + EX31_RS17425 0.75 -1.2
36,903 - EX31_RS17425 0.75 -0.2
37,049 + EX31_RS17425 0.90 +1.2
37,163 + -0.2
37,164 - +1.1
37,273 - EX31_RS17430 0.13 -1.2
37,490 + EX31_RS17430 0.35 -0.4
37,490 + EX31_RS17430 0.35 -0.2
37,495 - EX31_RS17430 0.36 +1.5
37,513 + EX31_RS17430 0.38 -0.2
37,513 + EX31_RS17430 0.38 +0.2
37,513 + EX31_RS17430 0.38 +0.2
37,513 + EX31_RS17430 0.38 +0.5
37,514 - EX31_RS17430 0.38 +1.2
37,514 - EX31_RS17430 0.38 +1.8
37,514 - EX31_RS17430 0.38 +1.3
37,514 - EX31_RS17430 0.38 -0.8
37,514 - EX31_RS17430 0.38 +0.5
37,514 - EX31_RS17430 0.38 +0.8
37,514 - EX31_RS17430 0.38 +1.4
37,514 - EX31_RS17430 0.38 -1.8
37,514 - EX31_RS17430 0.38 +2.4
37,514 - EX31_RS17430 0.38 +0.3
37,515 + EX31_RS17430 0.38 +0.8
37,560 + EX31_RS17430 0.43 +0.5
37,560 + EX31_RS17430 0.43 -0.8
37,575 + EX31_RS17430 0.44 -2.3
37,575 + EX31_RS17430 0.44 +0.8
37,739 - EX31_RS17430 0.61 +2.3
37,785 + EX31_RS17430 0.66 +1.3
37,810 + EX31_RS17430 0.69 -1.0
37,810 + EX31_RS17430 0.69 -0.2
37,810 + EX31_RS17430 0.69 -0.7
37,811 - EX31_RS17430 0.69 +0.0
37,885 + EX31_RS17430 0.77 -2.0
37,898 - EX31_RS17430 0.78 +1.6
37,898 - EX31_RS17430 0.78 +0.6
37,907 + EX31_RS17430 0.79 -2.9
37,938 + EX31_RS17430 0.82 -2.2
37,976 + EX31_RS17430 0.86 +0.7
37,976 + EX31_RS17430 0.86 -1.2
37,977 - EX31_RS17430 0.86 +0.8
37,979 + EX31_RS17430 0.87 -1.9
37,979 + EX31_RS17430 0.87 -0.4
37,979 + EX31_RS17430 0.87 +0.2
37,979 + EX31_RS17430 0.87 -2.2
38,038 + +0.8
38,038 + -0.8

Or see this region's nucleotide sequence