Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_596

Experiment: Chloride 400 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_594 and PfGW456L13_595 are separated by 74 nucleotidesPfGW456L13_595 and PfGW456L13_596 are separated by 60 nucleotidesPfGW456L13_596 and PfGW456L13_597 are separated by 114 nucleotides PfGW456L13_594 - DNA polymerase I (EC 2.7.7.7), at 687,197 to 690,001 _594 PfGW456L13_595 - FIG00953549: hypothetical protein, at 690,076 to 690,363 _595 PfGW456L13_596 - Homoserine kinase (EC 2.7.1.39), at 690,424 to 691,374 _596 PfGW456L13_597 - Zinc ABC transporter, periplasmic-binding protein ZnuA, at 691,489 to 692,418 _597 Position (kb) 690 691 692Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 690.072 kb on + strandat 690.073 kb on - strandat 690.073 kb on - strandat 690.086 kb on + strandat 690.086 kb on + strandat 690.087 kb on - strandat 690.087 kb on - strandat 690.087 kb on - strandat 690.195 kb on + strand, within PfGW456L13_595at 690.196 kb on - strand, within PfGW456L13_595at 690.232 kb on + strand, within PfGW456L13_595at 690.269 kb on - strand, within PfGW456L13_595at 690.327 kb on + strand, within PfGW456L13_595at 690.361 kb on + strandat 690.361 kb on + strandat 690.361 kb on + strandat 690.362 kb on - strandat 690.419 kb on + strandat 690.419 kb on + strandat 690.419 kb on + strandat 691.373 kb on - strandat 691.373 kb on - strandat 691.441 kb on + strandat 691.441 kb on + strandat 691.441 kb on + strandat 691.441 kb on + strandat 691.441 kb on + strandat 691.441 kb on + strandat 691.441 kb on + strandat 691.441 kb on + strandat 691.442 kb on - strandat 691.442 kb on - strandat 691.442 kb on - strandat 691.442 kb on - strandat 691.442 kb on - strandat 691.442 kb on - strandat 691.442 kb on - strandat 691.442 kb on - strandat 691.442 kb on - strandat 691.490 kb on + strandat 691.547 kb on + strandat 691.547 kb on + strandat 691.547 kb on + strandat 691.548 kb on - strandat 691.787 kb on + strand, within PfGW456L13_597at 691.814 kb on + strand, within PfGW456L13_597at 691.814 kb on + strand, within PfGW456L13_597at 691.814 kb on + strand, within PfGW456L13_597at 691.814 kb on + strand, within PfGW456L13_597at 691.815 kb on - strand, within PfGW456L13_597at 691.815 kb on - strand, within PfGW456L13_597at 691.815 kb on - strand, within PfGW456L13_597at 691.815 kb on - strand, within PfGW456L13_597at 691.815 kb on - strand, within PfGW456L13_597at 692.061 kb on + strand, within PfGW456L13_597at 692.124 kb on + strand, within PfGW456L13_597at 692.124 kb on + strand, within PfGW456L13_597at 692.125 kb on - strand, within PfGW456L13_597at 692.125 kb on - strand, within PfGW456L13_597at 692.125 kb on - strand, within PfGW456L13_597at 692.125 kb on - strand, within PfGW456L13_597at 692.125 kb on - strand, within PfGW456L13_597at 692.125 kb on - strand, within PfGW456L13_597at 692.125 kb on - strand, within PfGW456L13_597at 692.125 kb on - strand, within PfGW456L13_597at 692.125 kb on - strand, within PfGW456L13_597at 692.125 kb on - strand, within PfGW456L13_597at 692.177 kb on + strand, within PfGW456L13_597at 692.177 kb on + strand, within PfGW456L13_597at 692.206 kb on + strand, within PfGW456L13_597at 692.206 kb on + strand, within PfGW456L13_597at 692.206 kb on + strand, within PfGW456L13_597at 692.207 kb on - strand, within PfGW456L13_597at 692.207 kb on - strand, within PfGW456L13_597at 692.207 kb on - strand, within PfGW456L13_597at 692.207 kb on - strand, within PfGW456L13_597at 692.228 kb on + strand, within PfGW456L13_597at 692.228 kb on + strand, within PfGW456L13_597at 692.228 kb on + strand, within PfGW456L13_597at 692.228 kb on + strand, within PfGW456L13_597at 692.228 kb on + strand, within PfGW456L13_597at 692.228 kb on + strand, within PfGW456L13_597at 692.228 kb on + strand, within PfGW456L13_597at 692.228 kb on + strand, within PfGW456L13_597at 692.228 kb on + strand, within PfGW456L13_597at 692.228 kb on + strand, within PfGW456L13_597at 692.228 kb on + strand, within PfGW456L13_597at 692.229 kb on - strand, within PfGW456L13_597at 692.229 kb on - strand, within PfGW456L13_597at 692.229 kb on - strand, within PfGW456L13_597at 692.229 kb on - strand, within PfGW456L13_597at 692.229 kb on - strand, within PfGW456L13_597at 692.229 kb on - strand, within PfGW456L13_597at 692.229 kb on - strand, within PfGW456L13_597at 692.229 kb on - strand, within PfGW456L13_597at 692.229 kb on - strand, within PfGW456L13_597at 692.229 kb on - strand, within PfGW456L13_597at 692.229 kb on - strand, within PfGW456L13_597at 692.229 kb on - strand, within PfGW456L13_597at 692.229 kb on - strand, within PfGW456L13_597at 692.229 kb on - strand, within PfGW456L13_597at 692.229 kb on - strand, within PfGW456L13_597at 692.229 kb on - strand, within PfGW456L13_597at 692.229 kb on - strand, within PfGW456L13_597at 692.229 kb on - strand, within PfGW456L13_597at 692.229 kb on - strand, within PfGW456L13_597at 692.232 kb on + strand, within PfGW456L13_597at 692.232 kb on + strand, within PfGW456L13_597at 692.232 kb on + strand, within PfGW456L13_597at 692.233 kb on - strand, within PfGW456L13_597at 692.233 kb on - strand, within PfGW456L13_597at 692.233 kb on - strand, within PfGW456L13_597at 692.233 kb on - strand, within PfGW456L13_597at 692.233 kb on - strand, within PfGW456L13_597at 692.233 kb on - strand, within PfGW456L13_597

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloride 400 mM
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690,072 + +0.5
690,073 - +0.1
690,073 - -0.2
690,086 + +0.3
690,086 + -2.1
690,087 - -0.4
690,087 - +0.5
690,087 - -0.6
690,195 + PfGW456L13_595 0.41 +0.3
690,196 - PfGW456L13_595 0.42 -0.2
690,232 + PfGW456L13_595 0.54 +0.4
690,269 - PfGW456L13_595 0.67 -0.8
690,327 + PfGW456L13_595 0.87 -0.4
690,361 + -0.7
690,361 + +0.2
690,361 + +0.3
690,362 - -0.6
690,419 + +1.1
690,419 + +1.3
690,419 + +0.4
691,373 - +0.1
691,373 - -0.6
691,441 + +0.5
691,441 + -0.5
691,441 + -0.6
691,441 + +0.1
691,441 + -0.7
691,441 + +0.0
691,441 + +0.6
691,441 + +0.5
691,442 - -0.3
691,442 - +0.5
691,442 - +1.6
691,442 - -1.0
691,442 - -0.5
691,442 - -0.2
691,442 - +0.4
691,442 - +0.4
691,442 - +0.2
691,490 + +0.7
691,547 + -0.7
691,547 + +1.0
691,547 + +0.1
691,548 - +0.5
691,787 + PfGW456L13_597 0.32 +0.2
691,814 + PfGW456L13_597 0.35 +1.6
691,814 + PfGW456L13_597 0.35 +0.8
691,814 + PfGW456L13_597 0.35 +0.6
691,814 + PfGW456L13_597 0.35 -0.1
691,815 - PfGW456L13_597 0.35 -0.7
691,815 - PfGW456L13_597 0.35 -1.2
691,815 - PfGW456L13_597 0.35 +0.6
691,815 - PfGW456L13_597 0.35 -0.1
691,815 - PfGW456L13_597 0.35 -0.4
692,061 + PfGW456L13_597 0.62 -0.5
692,124 + PfGW456L13_597 0.68 +0.8
692,124 + PfGW456L13_597 0.68 -0.5
692,125 - PfGW456L13_597 0.68 -0.1
692,125 - PfGW456L13_597 0.68 +0.1
692,125 - PfGW456L13_597 0.68 +1.5
692,125 - PfGW456L13_597 0.68 +0.0
692,125 - PfGW456L13_597 0.68 -0.6
692,125 - PfGW456L13_597 0.68 -0.3
692,125 - PfGW456L13_597 0.68 +0.0
692,125 - PfGW456L13_597 0.68 -0.8
692,125 - PfGW456L13_597 0.68 -1.7
692,125 - PfGW456L13_597 0.68 -0.0
692,177 + PfGW456L13_597 0.74 +0.6
692,177 + PfGW456L13_597 0.74 +0.9
692,206 + PfGW456L13_597 0.77 -0.2
692,206 + PfGW456L13_597 0.77 +1.9
692,206 + PfGW456L13_597 0.77 +0.2
692,207 - PfGW456L13_597 0.77 -0.4
692,207 - PfGW456L13_597 0.77 -1.4
692,207 - PfGW456L13_597 0.77 +0.2
692,207 - PfGW456L13_597 0.77 +0.3
692,228 + PfGW456L13_597 0.79 +4.2
692,228 + PfGW456L13_597 0.79 +0.5
692,228 + PfGW456L13_597 0.79 +1.2
692,228 + PfGW456L13_597 0.79 -0.7
692,228 + PfGW456L13_597 0.79 +1.0
692,228 + PfGW456L13_597 0.79 +0.8
692,228 + PfGW456L13_597 0.79 +0.8
692,228 + PfGW456L13_597 0.79 -0.1
692,228 + PfGW456L13_597 0.79 -2.0
692,228 + PfGW456L13_597 0.79 +1.1
692,228 + PfGW456L13_597 0.79 -0.7
692,229 - PfGW456L13_597 0.80 +0.3
692,229 - PfGW456L13_597 0.80 -0.7
692,229 - PfGW456L13_597 0.80 +0.6
692,229 - PfGW456L13_597 0.80 +0.1
692,229 - PfGW456L13_597 0.80 +0.3
692,229 - PfGW456L13_597 0.80 -0.0
692,229 - PfGW456L13_597 0.80 -1.8
692,229 - PfGW456L13_597 0.80 +0.1
692,229 - PfGW456L13_597 0.80 -0.6
692,229 - PfGW456L13_597 0.80 -2.6
692,229 - PfGW456L13_597 0.80 -2.0
692,229 - PfGW456L13_597 0.80 -0.1
692,229 - PfGW456L13_597 0.80 -0.8
692,229 - PfGW456L13_597 0.80 -0.6
692,229 - PfGW456L13_597 0.80 -0.1
692,229 - PfGW456L13_597 0.80 -0.5
692,229 - PfGW456L13_597 0.80 +1.9
692,229 - PfGW456L13_597 0.80 +0.5
692,229 - PfGW456L13_597 0.80 +0.8
692,232 + PfGW456L13_597 0.80 +0.3
692,232 + PfGW456L13_597 0.80 -2.3
692,232 + PfGW456L13_597 0.80 -0.1
692,233 - PfGW456L13_597 0.80 +1.2
692,233 - PfGW456L13_597 0.80 -0.3
692,233 - PfGW456L13_597 0.80 -0.1
692,233 - PfGW456L13_597 0.80 +0.5
692,233 - PfGW456L13_597 0.80 -0.5
692,233 - PfGW456L13_597 0.80 +0.1

Or see this region's nucleotide sequence