Experiment: NLDM_metabolites (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS09920 and EX31_RS09925 are separated by 25 nucleotides EX31_RS09925 and EX31_RS09930 are separated by 16 nucleotides EX31_RS09930 and EX31_RS09935 are separated by 25 nucleotides
EX31_RS09920: EX31_RS09920 - nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase, at 193,234 to 194,277
_RS09920
EX31_RS09925: EX31_RS09925 - alpha-ribazole phosphatase, at 194,303 to 194,899
_RS09925
EX31_RS09930: EX31_RS09930 - adenosylcobinamide-GDP ribazoletransferase, at 194,916 to 195,668
_RS09930
EX31_RS09935: EX31_RS09935 - bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase, at 195,694 to 196,248
_RS09935
Position (kb) 194
195 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 193.358 kb on + strand, within EX31_RS09920 at 193.414 kb on - strand, within EX31_RS09920 at 193.414 kb on - strand, within EX31_RS09920 at 193.425 kb on + strand, within EX31_RS09920 at 193.430 kb on + strand, within EX31_RS09920 at 193.431 kb on - strand, within EX31_RS09920 at 193.431 kb on - strand, within EX31_RS09920 at 193.612 kb on + strand, within EX31_RS09920 at 193.644 kb on + strand, within EX31_RS09920 at 193.740 kb on + strand, within EX31_RS09920 at 193.740 kb on + strand, within EX31_RS09920 at 193.872 kb on + strand, within EX31_RS09920 at 193.873 kb on - strand, within EX31_RS09920 at 194.309 kb on - strand at 194.321 kb on - strand at 194.381 kb on - strand, within EX31_RS09925 at 194.381 kb on - strand, within EX31_RS09925 at 194.462 kb on + strand, within EX31_RS09925 at 194.536 kb on + strand, within EX31_RS09925 at 194.738 kb on - strand, within EX31_RS09925 at 194.926 kb on - strand at 195.051 kb on + strand, within EX31_RS09930 at 195.069 kb on + strand, within EX31_RS09930 at 195.108 kb on + strand, within EX31_RS09930 at 195.109 kb on - strand, within EX31_RS09930 at 195.109 kb on - strand, within EX31_RS09930 at 195.116 kb on + strand, within EX31_RS09930 at 195.116 kb on + strand, within EX31_RS09930 at 195.140 kb on + strand, within EX31_RS09930 at 195.190 kb on + strand, within EX31_RS09930 at 195.190 kb on + strand, within EX31_RS09930 at 195.190 kb on + strand, within EX31_RS09930 at 195.191 kb on - strand, within EX31_RS09930 at 195.237 kb on - strand, within EX31_RS09930 at 195.278 kb on - strand, within EX31_RS09930 at 195.353 kb on + strand, within EX31_RS09930 at 195.365 kb on + strand, within EX31_RS09930 at 195.391 kb on - strand, within EX31_RS09930 at 195.391 kb on - strand, within EX31_RS09930 at 195.427 kb on - strand, within EX31_RS09930 at 195.427 kb on - strand, within EX31_RS09930 at 195.427 kb on - strand, within EX31_RS09930 at 195.444 kb on - strand, within EX31_RS09930 at 195.446 kb on + strand, within EX31_RS09930 at 195.446 kb on + strand, within EX31_RS09930 at 195.447 kb on - strand, within EX31_RS09930 at 195.447 kb on - strand, within EX31_RS09930 at 195.447 kb on - strand, within EX31_RS09930 at 195.447 kb on - strand, within EX31_RS09930 at 195.574 kb on + strand, within EX31_RS09930 at 195.574 kb on + strand, within EX31_RS09930 at 195.574 kb on + strand, within EX31_RS09930 at 195.575 kb on - strand, within EX31_RS09930 at 195.575 kb on - strand, within EX31_RS09930 at 195.575 kb on - strand, within EX31_RS09930 at 195.661 kb on - strand at 195.671 kb on + strand at 195.672 kb on - strand at 195.672 kb on - strand at 195.695 kb on + strand at 195.696 kb on - strand at 195.741 kb on - strand at 195.741 kb on - strand at 195.741 kb on - strand at 195.790 kb on - strand, within EX31_RS09935
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_metabolites (C) remove 193,358 + EX31_RS09920 0.12 +1.4 193,414 - EX31_RS09920 0.17 +0.9 193,414 - EX31_RS09920 0.17 -0.4 193,425 + EX31_RS09920 0.18 +0.8 193,430 + EX31_RS09920 0.19 -1.7 193,431 - EX31_RS09920 0.19 +1.7 193,431 - EX31_RS09920 0.19 -1.2 193,612 + EX31_RS09920 0.36 -0.4 193,644 + EX31_RS09920 0.39 +1.9 193,740 + EX31_RS09920 0.48 -0.3 193,740 + EX31_RS09920 0.48 +0.2 193,872 + EX31_RS09920 0.61 +0.8 193,873 - EX31_RS09920 0.61 -0.8 194,309 - -1.2 194,321 - -0.4 194,381 - EX31_RS09925 0.13 +2.2 194,381 - EX31_RS09925 0.13 +2.5 194,462 + EX31_RS09925 0.27 -2.9 194,536 + EX31_RS09925 0.39 +1.5 194,738 - EX31_RS09925 0.73 +0.9 194,926 - +1.7 195,051 + EX31_RS09930 0.18 +1.7 195,069 + EX31_RS09930 0.20 +1.2 195,108 + EX31_RS09930 0.25 -1.2 195,109 - EX31_RS09930 0.26 -0.5 195,109 - EX31_RS09930 0.26 +2.2 195,116 + EX31_RS09930 0.27 -1.4 195,116 + EX31_RS09930 0.27 +1.2 195,140 + EX31_RS09930 0.30 +2.0 195,190 + EX31_RS09930 0.36 +0.2 195,190 + EX31_RS09930 0.36 +1.2 195,190 + EX31_RS09930 0.36 +3.7 195,191 - EX31_RS09930 0.37 -0.8 195,237 - EX31_RS09930 0.43 -3.1 195,278 - EX31_RS09930 0.48 +1.2 195,353 + EX31_RS09930 0.58 +2.2 195,365 + EX31_RS09930 0.60 +4.3 195,391 - EX31_RS09930 0.63 +1.2 195,391 - EX31_RS09930 0.63 -2.5 195,427 - EX31_RS09930 0.68 -0.4 195,427 - EX31_RS09930 0.68 -2.8 195,427 - EX31_RS09930 0.68 -1.7 195,444 - EX31_RS09930 0.70 +0.2 195,446 + EX31_RS09930 0.70 -2.2 195,446 + EX31_RS09930 0.70 +3.4 195,447 - EX31_RS09930 0.71 +1.2 195,447 - EX31_RS09930 0.71 +0.8 195,447 - EX31_RS09930 0.71 -1.4 195,447 - EX31_RS09930 0.71 +0.6 195,574 + EX31_RS09930 0.87 -1.4 195,574 + EX31_RS09930 0.87 +0.9 195,574 + EX31_RS09930 0.87 +4.3 195,575 - EX31_RS09930 0.88 -1.8 195,575 - EX31_RS09930 0.88 -1.7 195,575 - EX31_RS09930 0.88 -0.4 195,661 - +0.8 195,671 + -0.8 195,672 - -0.7 195,672 - +0.8 195,695 + -1.8 195,696 - +1.7 195,741 - -2.2 195,741 - -2.8 195,741 - +0.2 195,790 - EX31_RS09935 0.17 -1.2
Or see this region's nucleotide sequence