Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_21640

Experiment: Tween 20 (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_21635 and AO356_21640 are separated by 495 nucleotidesAO356_21640 and AO356_21645 are separated by 11 nucleotidesAO356_21645 and AO356_21650 are separated by 34 nucleotides AO356_21635: AO356_21635 - ABC transporter substrate-binding protein, at 4,842,189 to 4,843,931 _21635 AO356_21640: AO356_21640 - acetyl-CoA C-acetyltransferase [EC: 2.3.1.9] (from data), at 4,844,427 to 4,845,608 _21640 AO356_21645: AO356_21645 - succinyl-CoA--3-ketoacid-CoA transferase, at 4,845,620 to 4,846,285 _21645 AO356_21650: AO356_21650 - succinyl-CoA--3-ketoacid-CoA transferase, at 4,846,320 to 4,847,018 _21650 Position (kb) 4844 4845 4846Strain fitness (log2 ratio) -1 0 1 2at 4843.449 kb on + strand, within AO356_21635at 4843.449 kb on + strand, within AO356_21635at 4843.449 kb on + strand, within AO356_21635at 4843.790 kb on + strandat 4843.790 kb on + strandat 4843.790 kb on + strandat 4843.790 kb on + strandat 4843.791 kb on - strandat 4843.791 kb on - strandat 4843.791 kb on - strandat 4843.791 kb on - strandat 4843.791 kb on - strandat 4843.818 kb on + strandat 4843.818 kb on + strandat 4843.819 kb on - strandat 4843.890 kb on + strandat 4843.890 kb on + strandat 4843.890 kb on + strandat 4843.890 kb on + strandat 4843.929 kb on + strandat 4843.929 kb on + strandat 4843.930 kb on - strandat 4843.930 kb on - strandat 4844.054 kb on + strandat 4844.054 kb on + strandat 4844.054 kb on + strandat 4844.054 kb on + strandat 4844.054 kb on + strandat 4844.054 kb on + strandat 4844.054 kb on + strandat 4844.054 kb on + strandat 4844.054 kb on + strandat 4844.055 kb on - strandat 4844.055 kb on - strandat 4844.055 kb on - strandat 4844.055 kb on - strandat 4844.055 kb on - strandat 4844.055 kb on - strandat 4844.055 kb on - strandat 4844.055 kb on - strandat 4844.055 kb on - strandat 4844.055 kb on - strandat 4844.058 kb on + strandat 4844.058 kb on + strandat 4844.059 kb on - strandat 4844.118 kb on + strandat 4844.118 kb on + strandat 4844.118 kb on + strandat 4844.118 kb on + strandat 4844.118 kb on + strandat 4844.118 kb on + strandat 4844.118 kb on + strandat 4844.118 kb on + strandat 4844.118 kb on + strandat 4844.119 kb on - strandat 4844.119 kb on - strandat 4844.119 kb on - strandat 4844.119 kb on - strandat 4844.119 kb on - strandat 4844.119 kb on - strandat 4844.119 kb on - strandat 4844.119 kb on - strandat 4844.119 kb on - strandat 4844.122 kb on + strandat 4844.182 kb on + strandat 4844.182 kb on + strandat 4844.182 kb on + strandat 4844.182 kb on + strandat 4844.182 kb on + strandat 4844.186 kb on + strandat 4844.228 kb on - strandat 4844.319 kb on + strandat 4844.773 kb on + strand, within AO356_21640at 4844.794 kb on - strand, within AO356_21640at 4845.106 kb on + strand, within AO356_21640at 4845.107 kb on - strand, within AO356_21640at 4845.107 kb on - strand, within AO356_21640at 4845.107 kb on - strand, within AO356_21640at 4845.145 kb on + strand, within AO356_21640at 4845.146 kb on - strand, within AO356_21640at 4846.182 kb on + strand, within AO356_21645at 4846.182 kb on + strand, within AO356_21645at 4846.182 kb on + strand, within AO356_21645at 4846.182 kb on + strand, within AO356_21645at 4846.183 kb on - strand, within AO356_21645at 4846.183 kb on - strand, within AO356_21645at 4846.183 kb on - strand, within AO356_21645at 4846.183 kb on - strand, within AO356_21645at 4846.183 kb on - strandat 4846.224 kb on + strandat 4846.224 kb on + strandat 4846.224 kb on + strandat 4846.224 kb on + strandat 4846.224 kb on + strandat 4846.225 kb on - strandat 4846.225 kb on - strandat 4846.227 kb on + strandat 4846.227 kb on + strandat 4846.291 kb on + strandat 4846.325 kb on + strandat 4846.325 kb on + strandat 4846.325 kb on + strandat 4846.326 kb on - strandat 4846.384 kb on + strandat 4846.385 kb on - strandat 4846.385 kb on - strandat 4846.385 kb on - strandat 4846.385 kb on - strandat 4846.385 kb on - strandat 4846.510 kb on + strand, within AO356_21650at 4846.510 kb on + strand, within AO356_21650at 4846.511 kb on - strand, within AO356_21650

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Per-strain Table

Position Strand Gene LocusTag Fraction Tween 20 (C)
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4,843,449 + AO356_21635 0.72 +0.4
4,843,449 + AO356_21635 0.72 -1.0
4,843,449 + AO356_21635 0.72 +0.6
4,843,790 + +0.0
4,843,790 + -0.4
4,843,790 + +0.1
4,843,790 + +0.6
4,843,791 - -0.5
4,843,791 - +1.8
4,843,791 - -1.6
4,843,791 - -0.3
4,843,791 - +0.2
4,843,818 + -0.4
4,843,818 + +0.9
4,843,819 - +0.1
4,843,890 + +1.2
4,843,890 + -0.0
4,843,890 + -0.4
4,843,890 + -0.6
4,843,929 + -0.5
4,843,929 + +0.1
4,843,930 - -0.1
4,843,930 - +1.1
4,844,054 + +0.8
4,844,054 + +0.8
4,844,054 + +0.2
4,844,054 + +0.7
4,844,054 + +0.3
4,844,054 + -0.1
4,844,054 + +1.6
4,844,054 + -0.2
4,844,054 + -0.5
4,844,055 - +0.3
4,844,055 - -0.3
4,844,055 - +0.4
4,844,055 - -0.2
4,844,055 - -0.0
4,844,055 - +0.6
4,844,055 - -0.1
4,844,055 - +0.1
4,844,055 - -0.2
4,844,055 - -0.5
4,844,058 + -0.2
4,844,058 + +0.5
4,844,059 - +0.4
4,844,118 + -0.2
4,844,118 + +0.4
4,844,118 + +0.3
4,844,118 + +0.2
4,844,118 + -0.7
4,844,118 + -1.0
4,844,118 + -0.9
4,844,118 + +0.6
4,844,118 + +0.7
4,844,119 - +0.5
4,844,119 - -0.8
4,844,119 - -0.5
4,844,119 - -0.6
4,844,119 - +0.2
4,844,119 - -1.3
4,844,119 - -0.8
4,844,119 - +0.1
4,844,119 - +1.2
4,844,122 + +1.2
4,844,182 + +0.7
4,844,182 + +0.8
4,844,182 + +0.1
4,844,182 + -0.6
4,844,182 + -0.1
4,844,186 + +0.6
4,844,228 - -0.1
4,844,319 + +0.7
4,844,773 + AO356_21640 0.29 -0.4
4,844,794 - AO356_21640 0.31 -0.8
4,845,106 + AO356_21640 0.57 -1.2
4,845,107 - AO356_21640 0.58 +0.4
4,845,107 - AO356_21640 0.58 -1.7
4,845,107 - AO356_21640 0.58 -1.0
4,845,145 + AO356_21640 0.61 -0.6
4,845,146 - AO356_21640 0.61 -1.0
4,846,182 + AO356_21645 0.84 -0.1
4,846,182 + AO356_21645 0.84 +1.1
4,846,182 + AO356_21645 0.84 -0.5
4,846,182 + AO356_21645 0.84 -0.4
4,846,183 - AO356_21645 0.85 +0.9
4,846,183 - AO356_21645 0.85 +0.2
4,846,183 - AO356_21645 0.85 -0.1
4,846,183 - AO356_21645 0.85 +1.4
4,846,183 - -0.4
4,846,224 + -0.9
4,846,224 + -1.7
4,846,224 + -0.1
4,846,224 + -0.2
4,846,224 + -0.4
4,846,225 - +0.1
4,846,225 - -0.8
4,846,227 + -1.1
4,846,227 + -1.6
4,846,291 + -1.1
4,846,325 + +0.4
4,846,325 + -0.2
4,846,325 + +0.1
4,846,326 - +0.7
4,846,384 + -0.6
4,846,385 - -0.3
4,846,385 - +0.9
4,846,385 - -0.5
4,846,385 - -0.2
4,846,385 - -0.3
4,846,510 + AO356_21650 0.27 -0.4
4,846,510 + AO356_21650 0.27 -0.7
4,846,511 - AO356_21650 0.27 +0.6

Or see this region's nucleotide sequence